These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2717#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 800 fasta sequence [TTCCTCTGCTACCGGCGAGAATGAAGACTATTCTCAGCAGTCAGACTGTCGACATCCCCGACAAAGTCGAGGTGAGGCTGAAGGGGCGTACGGTCATCGTCAAGGGGCCCCGCGGGAAACTCGTCAGGGAGTTCAACCACATCAACCTGGAGCTTTGCCTTCTGGGCAAGAAG-CACAAAAAGCTTCGTGTGG-ACAAGTGGTGGGGCAACAGAAAGGAGCTGGCTACAGTTCGCACCATCTGCA-GCCATGTCCAGAACATG-ATCAAGGGAGTCACTTTGGGTTTCCGCTACAAAATGCGCTCCGTGTATGCCCATTTCCCCATCAATGTTGTCATCCAGGAAAATGGAAGTATAGTAGAAATCAGGAACTTTCTGGGAGAGAAGTACATCCGCCGTGTCCGAATGAGGCAGGGTGTGAACTGTGCCGTATCTGCAGCCCAAAAGGATGAGCTGATCCTTGAGGGTAACGACATTGAGCTGGTGTCGAACTCAGCTGCTCTTATCCAACAGGCCACCACAGTCAAAAATAAGGATATCAGGAAGTTCTTGGACGGTATTTATGTATCTGAGAAGGGAACTGTTGTGGACCCAGAACAGTAAAAGTGCATCAACACTCGCAGCCACGATCCAACCGGCCACGTTGGTTAGAGAGGAGCGGATTACATCCAGACGACTATTGTAGTAAAGACGTTGAATAGATGTATCCCATGTCCCAGTTTGACCAATAAAATGACAGATTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAACCCCCGGGGGGGGCCCGGGACCCAATTTTTG] [+] EMBL CA589360 [TTCCTCTGCTACCGGCGAGAATGAAGACTATTCTCAGCAGTCAGACTGTCGACATCCCCGACAAAGTCGAGGTGAGGCTGAAGGGGCGTACGGTCATCGTCAAGGGGCCCCGCGGGAAACTCGTCAGGGAGTTCAACCACATCAACCTGGAGCTTTGCCTTCTGGGCAAGAAG CACAAAAAGCTTCGTGTGG ACAAGTGGTGGGGCAACAGAAAGGAGCTGGCTACAGTTCGCACCATCTGCA GCCATGTCCAGAACATG ATCAAGGGAGTCACTTTGGGTTTCCGCTACAAAATGCGCTCCGTGTATGCCCATTTCCCCATCAATGTTGTCATCCAGGAAAATGGAAGTATAGTAGAAATCAGGAACTTTCTGGGAGAGAAGTACATCCGCCGTGTCCGAATGAGGCAGGGTGTGAACTGTGCCGTATCTGCAGCCCAAAAGGATGAGCTGATCCTTGAGGGTAACGACATTGAGCTGGTGTCGAACTCAGCTGCTCTTATCCAACAGGCCACCACAGTCAAAAATAAGGATATCAGGAAGTTCTTGGACGGTATTTATGTATCTGAGAAGGGAACTGTTGTGGACCCAGAACAGTAAAAGTGCATCAACACTCG ] [+] EMBL BU805149 [ GAAGACTATTCTCAGCAGTCAGACTGTCGACATCCCCGACAAAGTCGAGGTGAGGCTGAAGGGGCGTACGGTCATCGTCAAGGGGCCCCGCGGGAAACTCGTCAGGGAGTTCAACCACATCAACCTGGAGCTTTGCCTTCTGGGCAAGAAG CACAAAAAGCTTCGTGTGG ACAAGTGGTGGGGCAACAGAAAGGAGCTGGCTACAGTTCGCACCATCTGCATTTCTTGTCCAGAACATG ATCAAGGGAGTCACTTTGGGTTTCCGCTACAAAATGCGCTCCGTGTATGCCCATTTCCCCATCAATGTTGTCATCCAGGAAAATGGAAGTATAGTAGAAATCAGGAACTTTCTGGGAGAGAAGTACATCCGCCGTGTCCGAATGAGGCAGGGTGTGAACTGTGCCGTATCTGCAGCCCAAAAGGATGAGCTGATCCTTGAGGGTAACGACATTGAGCTGGTGTCGAACTCAGCTGCTCTTATCCAACAGGCCACCACAGTCAAAAATAAGG ] [+] EMBL FR0055212 [ GACATCCCCGACAAAGTCGAGGTGAGGCTGAAGGGGCGTACGGTCATCGTCAAGGGGCCCCGCGGGAAACTCGTCAGGGAGTTCAACCACATCAACCTGGAGCTTTGCCTTCTGGGCAAGAAG CACAAAAAGCTTCGTGTGG ACAAGTGGTGGGGCAACAGAAAGGAGCTGGCTACAGTTCGCACCATCTGCA GCCATGTCCAGAACATG ATCAAGGGAGTCACTTTGGGTTTCCGCTACAAAATGCGCTCCGTGTATGCCCATTTCCCCATCAATGTTGTCATCCAGGAAAATGGAAGTATAGTAGAAATCAGGAACTTTCTGGGAGAGAAGTACATCCGCCGTGTCCGAATGAGGCAGGGTGTGAACTGTGCCGTATCTGCAGCCCAAAAGGATGAGCTGATCCTTGAGGGTAACGACATTGAGCTGGTGTCGAACTCAGCTGCTCTTATCCAACAGGCCACCACAGTCAAAAATAAGGATATCAGGAAGTTCTTGGACGGTATTTATGTATCTGAGAAGGGAACTGTTGTGGGCCCAGAACAGTAAAAGTGGATCAA ] [+] EMBL FR0057383 [ ACATCCCCGACAAAGTCGAGGTGAGGCTGAAGGGGCGTACGGTCATCGTCAAGGGGCCCCGCGGGAAACTCGTCAGGGAGTTCAACCACATCAACCTGGAGCTTTGCCTTCTGGGCAAGAAG CACAAAAAGCTTCGTGTGG ACAAGTGGTGGGGCAACAGAAAGGAGCTGGCTACAGTTCGCACCATCTGCA GCCATGTCCAGAACATG ATCAAGGGAGTCACTTTGGGTTTCCGCTACAAAATGCGCTCCGTGTATGCCCATTTCCCCATCAATGTTGTCATCCAGGAAAATGGAAGTATAGTAGAAATCAGGAACTTTCTGGGAGAGAAGTACATCCGCCGTGTCCGAATGAGGCAGGGTGTGAACTGTGCCGTATCTGCAGCCCAAAAGGATGAGCTGATCCTTGAGGGTAACGACATTGAGCTGGTGTCGAACTCAGCTGCTCTTATCCA ] [+] EMBL CA330583 [ CCCCGACACCGTCGAGGTGAGGCTGAAGGGGCGTACGGTCATCGTCAAGGGGCCCCGCGGGAAACTCGTCAGGGAGTTCAACCACATCAACCTGGAGCTTTGCCTTCTGGGCAAGAAG CACAAAAAGCTTCGTGTGG ACAAGTGGTGGGGCAACAGAAAGGAGCTGGCTACAGTTCGCACCATCTGCA GCCATGTCCAGAACATGTATCTTTGGAGTCACTTTGGGTTTCCGCTACAAAATGCGCTCCGTGTATGCCCATTTCCCCATCAATGTTGTCATCCAGGAAAATGGAAGTATAGTAGAAATCAGGAACTTTCTGGGAGAGAAGTACATCCGCCGTGTCCGAATGAGGCAGGGTGTGAACTGTGCCGTATCTGCAGCCCAAAAGGATGAGCTGATCCTTGAGGGTAACGACATTGAGCTGGTGTCGAACTCAGCTGCTCTTATCCAACAGGCCACCACAGTCAAAAATAAGGATATCAGGAAGTTCTTGGACGGT ] [+] EMBL FR0055325 [ CCCCGACAAAGTCGAGGTGAGGCTGAAGGGGCGTACGGTCATCGTCAAGGGGCCCCGCGGGAAACTCGTCAGGGAGTTCAACCACATCAACCTGGAGCTTTGCCTTCTGGGCAAGAAG CACAAAAAGCTTCGTGTGG ACAAGTGGTGGGGCAACAGAAAGGAGCTGGCTACAGTTCGCACCATCTGCA GCCATGTCCAGAACATG ATCAAGGGAGTCACTTTGGGTTTCCGCTACAAAATGCGCTCCGTGTATGCCCATTTCCCCATCAATGTTGTCATCCAGGAAAATGGAAGTATAGTAGAAATCAGGAACTTTCTGGGAGAGAAGTACATCCGCCGTGTCCGAATGAGGCAGGGTGTGAACTGTGCCGTATCTGCAGCCCAAAAGGATGAGCTGATCCTTGAGGGTAACGACATTGAGCTGGTGTCGAACTCAGCTGCTCTTATCCAACAGGGCACCACAGTCAAGAA ] [+] EMBL FR0055906 [ GGGAGTTCAACCACATCAACCTGGAGCTTTGCCTTCTGGGCAAGAAG CACAAAAAGCTTCGTGTGG ACAAGTGGTGGGGCAACAGAAAGGAGCTGGCTACAGTTCGCACCATCTGCA GCCATGTCCAGAACATG ATCAAGGGAGTCACTTTGGGTTTCCGCTACAAAATGCGCTCCGTGTATGCCCATTTCCCCATCAATGTTGTCATCCAGGAAAATGGAAGTATAGTAGAAATCAGGAACTTTCTGGGAGAGAAGTACATCCGCCGTGTCCGAATGAGGCAGGGTGTGAACTGTGCCGTATCTGCAGCCCAAAAGGATGAGCTGATCCTTGAGGGTAACGACATTGAGCTGGTGTCCAACTCAGCTGCTCTTATCCAACAGGCCACCACAGTCAA ] [-] EMBL CA332584 [ GAAGCCCCAAAAACGTTCGTGTGGCACAAGTGGTGGGCCAACAGAAAGGAGCTGCTTACAGTTCGCACCATCTGCA GCCATGTCCAGAACATG ATCAAGGGAGTCCCTTTGGGTTTCCGCTACAAAATGCGCTCCGTGTATGCCCATTTCCCCATCAATGTTGTCATCCAGGAAAATGGAAGTATAGTAGAAATCAGGAACTTTCTGGGAGAGAAGTACATCCGCCGTGTCCGAATGAGGCAGGGTGTGAACTGTGCCGTATCTGCAGCCCAAAAGGATGAGCTGATCCTTGAGGGTAACGACATTGAGCTGGTGTCGAACTCAGCTGCTCTTATCCAACAGGCCACCACAGTCAAAAATAAGGATATCAGGAAGTTCTTGGACGGTATTTATGTATCTGAGAAGGGAACTGTTGTGGACCCAGAACAGTAAAAGTGCATCAACACTCGCAGCCACGATCCAACCGGCCACGTTGGTTAGAGAGGAGCGGATTACATCCAGACGACTATTGTAGTAAAGACGTTGAATAGATGTATCCCATGTCCCAGTTTGACCAATAAAATGACAGATTTTTC ] [+] EMBL CA329900 [ CCATCTGCA GCCATGTCCAGAACATG ATCAAGGGAGTCACTTTGGGTTTCCGCTACAAAATGCGCTCCGTGTATGCCCATTTCCCCATCAATGTTGTCATCCAGGAAAATGGAAGTATAGTAGAAATCAGGAACTTTCTGGGAGAGAAGTACATCCGCCGTGTCCGAATGAGGCAGGGTGTGAACTGTGCCGTATCTGCAGCCCAAAAGGATGAGCTGATCCTTGAGGGTAACGACATTGAGCTGGTGTCGAACTCAGCTGCTCTTATCCAACAGGCCACCACAGTCAAAAATAAGGATATCAGGAAGTTCTTGGACGGTATTTATGTATCTGAGAAGGGAACTGTTGTGGACCCAGAACAGTAAAAGTGCATCAACACTCGCAGCCACGATCCAACCGGCCACGTTGGTTAGAGAGGAGCGGATTACATCCAGACGACTATTGTAGTAAA ] [+] EMBL CA330198 [ TTGTGGACCCAGAACAGTAAAAGTGCATCAACACTCGCAGCCACGATCCAACCGGCCACGTTGGTTAGAGAGGAGCGGATTACATCCAGACGACTATTGTAGTAAAGACGTTGAATAGATGTATCCCATGTCCCAGTTTGACCAATAAAATGACAGATTTTTCCAA ] [+] EMBL CA845159 [ GCATCAACACTCGCAGCCACGATCCAACCGGCCACGTTGGTTAGAGAGGAGCGGATTACATCCAGACGACTATTGTAGTAAAGACGTTGAATAGATGTATCCCATGTCCCAGTTTGACCAATAAAATGACAGATTT ] [+] EMBL FR0056149 [ ACACTCGCAGCCACGATCCAACCGGCCACGTTGGTTAGAGAGGAGCGGATTACATCCAGACGACTATTGTAGTAAAGACGTTGAATAGATGTATCCCATGTCCCAGTTTGACCAATAAAATGACAGATTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAACCCCCGGGGGGGGCCCGGGACCCAATTTTTG] consensusID : consensus_2717#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 594 fasta sequence [AGGTATTGAACTATAGTCTGCATCACTCACTTATAAGAGACTCATAGTGTGACAGATCAGTTGTGGTGATCAGAGGCCAAAAGGTGTCTCAAAGATTTTAAGGTCTCAGATGTTCTCATTGATGCTGGGACAGAAGTTCTGTTCTGACTTTCCCATCAACTTGCAATGAAGTGTGACAGGTGAAGCTGAAAACTTAATTGCATGAAAATGGTAATTTAAAATGTGGTGTAGATTTAAGATAAATGCTTTTACACCAGGACCTCCGTTTATGAATTTCTGGAGATCGAGGATGGAGATTTGTGGGATTGTAGCAGTCATGCTTTCACCAGTATTCTATTTAGTTTGTTTTCTCGATAAGATGTCTCTTGTTTAGGTTCTGAATTTCTGATGCATATGTTTTAATCTTTGCGTTGATTGTCCTGCCTGAGATTACGTCTTTGTCTCAAACTTGTTTTTCTTCCTTTTTCGCAGCCACGATCCAACCGGCCACGTTGGTTAGAGAGGAGCGGATTACATCCAGACGACTATTGTAGTAAAGACGTTGAATAGATGTATCCCATGTCCCAGTTTGGCCAATAAAATGACAGATTTTTC] [-] EMBL CA332008 [AGGTATTGAACTATAGTCTGCATCACTCACTTATAAGAGACTCATAGTGTGACAGATCAGTTGTGGTGATCAGAGGCCAAAAGGTGTCTCAAAGATTTTAAGGTCTCAGATGTTCTCATTGATGCTGGGACAGAAGTTCTGTTCTGACTTTCCCATCAACTTGCAATGAAGTGTGACAGGTGAAGCTGAAAACTTAATTGCATGAAAATGGTAATTTAAAATGTGGTGTAGATTTAAGATAAATGCTTTTACACCAGGACCTCCGTTTATGAATTTCTGGAGATCGAGGATGGAGATTTGTGGGATTGTAGCAGTCATGCTTTCACCAGTATTCTATTTAGTTTGTTTTCTCGATAAGATGTCTCTTGTTTAGGTTCTGAATTTCTGATGCATATGTTTTAATCTTTGCGTTGATTGTCCTGCCTGAGATTACGTCTTTGTCTCAAACTTGTTTTTCTTCCTTTTTCGCAGCCACGATCCAACCGGCCACGTTGGTTAGAGAGGAGCGGATTACATCCAGACGACTATTGTAGTAAAGACGTTGAATAGATGTATCCCATGTCCCAGTTTGGCCAATAAAATGACAGATTTTTC] consensusID : consensus_2717#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence [AAAGGTTGGTTTGATTTTCGTCGAGGTGAGGCTGAAGGGGCGTACGGTCATCGTCAAGGGGCCCCGCGGGAAACTCGTCAGGGAGTTCAACCACATCAACCTGGAGCTTTGCCTTCTGGGCAAGAAGCACAAAAAGCTTCGTGTGGACAAGTGGTGGGGCAACAGAAAGGAGCTGGCTACAGTTCGCACCATCTGCAGCCATGTCCAGAACATGATCAAGGGAGTCACTTTGGGTTTCCGCTACAAAATGCGCTCCGTGTATGCCCATTTCCCCATCAATGTTGTCATCCAGGAAAATGGAAGTATAGTAGAAATCAGGAACTTTCTGGGAGAGAAGTACATCCGCCGTGTCCGAATGAGGCAGGGTGTGAACTGTGCCGTATCTGCAGCCCAAAAAGATGAGCTGATCCTTGAGGGTAACGACATTGANCTGGTGT] [+] EMBL FR0055903 [AAAGGTTGGTTTGATTTTCGTCGAGGTGAGGCTGAAGGGGCGTACGGTCATCGTCAAGGGGCCCCGCGGGAAACTCGTCAGGGAGTTCAACCACATCAACCTGGAGCTTTGCCTTCTGGGCAAGAAGCACAAAAAGCTTCGTGTGGACAAGTGGTGGGGCAACAGAAAGGAGCTGGCTACAGTTCGCACCATCTGCAGCCATGTCCAGAACATGATCAAGGGAGTCACTTTGGGTTTCCGCTACAAAATGCGCTCCGTGTATGCCCATTTCCCCATCAATGTTGTCATCCAGGAAAATGGAAGTATAGTAGAAATCAGGAACTTTCTGGGAGAGAAGTACATCCGCCGTGTCCGAATGAGGCAGGGTGTGAACTGTGCCGTATCTGCAGCCCAAAAAGATGAGCTGATCCTTGAGGGTAACGACATTGANCTGGTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2717#0 TTCCTCTGCTACCGGCGAGAATGAAGACTATTCTCAGCAGTCAGACTGTCGACATCCCCG 60 consensus_2717#2 -------------------------------------------AAAGGTTGGTTTGATTT 17 consensus_2717#1 ------------------------------------------------------------ consensus_2717#0 ACAAAGTCGAGGTGAGGCTGAAGGGGCGTACGGTCATCGTCAAGGGGCCCCGCGGGAAAC 120 consensus_2717#2 TC---GTCGAGGTGAGGCTGAAGGGGCGTACGGTCATCGTCAAGGGGCCCCGCGGGAAAC 74 consensus_2717#1 ------------------------------------------------------------ consensus_2717#0 TCGTCAGGGAGTTCAACCACATCAACCTGGAGCTTTGCCTTCTGGGCAAGAAGCACAAAA 180 consensus_2717#2 TCGTCAGGGAGTTCAACCACATCAACCTGGAGCTTTGCCTTCTGGGCAAGAAGCACAAAA 134 consensus_2717#1 ------AGGTATTGAACTAT---AGTCTGCATCACTCACTTAT----AAGAGACTCATAG 47 ** ** *** * * *** * * * *** * **** * ** * consensus_2717#0 AGCTTCGTGTGGACAAGTGGTGGGGCAACAGAAAGGAGCTGGCT-ACAGTTCGCACCATC 239 consensus_2717#2 AGCTTCGTGTGGACAAGTGGTGGGGCAACAGAAAGGAGCTGGCT-ACAGTTCGCACCATC 193 consensus_2717#1 TGTGACAGATCAGTT-GTGGTGAT-CAGAGGCCAAAAGGTGTCTCAAAGATTTTAAGGTC 105 * * * ****** ** * * ** ** ** * ** * * ** consensus_2717#0 TGCAGCCATGTCCA--GAACATGATCAAGGGAGTCACTTTGGGTTTCCGCTACAAAATGC 297 consensus_2717#2 TGCAGCCATGTCCA--GAACATGATCAAGGGAGTCACTTTGGGTTTCCGCTACAAAATGC 251 consensus_2717#1 T-CAGATGTTCTCATTGATGCTGGGACAGAAGTTCTGTTCTGACTTTCCCATCAACTTGC 164 * *** * ** ** ** ** ** ** * ** * * *** *** consensus_2717#0 GCTCCGTGTATGCCCATTTCCCCATCAATGTTGTCATCCAGGAAAATGGAAGTATAGTAG 357 consensus_2717#2 GCTCCGTGTATGCCCATTTCCCCATCAATGTTGTCATCCAGGAAAATGGAAGTATAGTAG 311 consensus_2717#1 AATGAA-GTGTGACAGGTGAAGC-TGAAAACTTAATTGCATGAAAATGGTAATTTAAAAT 222 * ** ** * * * * ** * * ** ******** * * ** * consensus_2717#0 AAATCAGGAACTTTCTGGGAGAGAAGTACATCCGCCGTGTCCGAATGAGGCAGGGTGTGA 417 consensus_2717#2 AAATCAGGAACTTTCTGGGAGAGAAGTACATCCGCCGTGTCCGAATGAGGCAGGGTGTGA 371 consensus_2717#1 GTGGTGTAGATTT---AAGATAAATGCTTTTACACCAGGACCT-------CCGTTTATGA 272 * ** ** * * * * * ** * ** * * * *** consensus_2717#0 ACTGTGCCGTATCTGCAGCCCAAAAGGATGAGCTGATCCTTGAGGGTAACGACATTGAGC 477 consensus_2717#2 ACTGTGCCGTATCTGCAGCCCAAAAAGATGAGCTGATCCTTGAGGGTAACGACATTGANC 431 consensus_2717#1 ATTTCTGGAGATC----GAGGATGGAGATTTGTGGGATTGTAGCAGTCATGC--TTTCAC 326 * * *** * * *** * * * ** * * ** * consensus_2717#0 TGGTGTCGAACTCAGCTGCTCTTATCCAACAGGCCACCACAGTCAAAAATAAGGATATCA 537 consensus_2717#2 TGGTGT------------------------------------------------------ 437 consensus_2717#1 CAGTATTCTATTTAGTTTGTTTTCTCGATAAGATGTCTCTTGTTTAGGTTCTGAATTTCT 386 ** * consensus_2717#0 GGAAGTTCTTGGACGGTATTTATGTA------TCTGAGAAGGGAACTGTTGTGGACCCAG 591 consensus_2717#2 ------------------------------------------------------------ consensus_2717#1 GATGCATATGTTTTAATCTTTGCGTTGATTGTCCTGCCTGAGATTACGTCTTTGTCTCAA 446 consensus_2717#0 AACAGTAAAAGTGCATCAACACTCGCAGCCACGATCCAACCGGCCACGTTGGTTAGAGAG 651 consensus_2717#2 ------------------------------------------------------------ consensus_2717#1 ACTTGT---TTTTCTTCCTTTTTCGCAGCCACGATCCAACCGGCCACGTTGGTTAGAGAG 503 consensus_2717#0 GAGCGGATTACATCCAGACGACTATTGTAGTAAAGACGTTGAATAGATGTATCCCATGTC 711 consensus_2717#2 ------------------------------------------------------------ consensus_2717#1 GAGCGGATTACATCCAGACGACTATTGTAGTAAAGACGTTGAATAGATGTATCCCATGTC 563 consensus_2717#0 CCAGTTTGACCAATAAAATGACAGATTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAACC 771 consensus_2717#2 ------------------------------------------------------------ consensus_2717#1 CCAGTTTGGCCAATAAAATGACAGATTTTTC----------------------------- 594 consensus_2717#0 CCCGGGGGGGGCCCGGGACCCAATTTTTG 800 consensus_2717#2 ----------------------------- consensus_2717#1 ----------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |