These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2731#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 498 fasta sequence [CTTCTGCTTGCAGTCTGGTTTGGGTGCTACACTAAAGCTATAACCATGTCCATCAATGTCTTAGAGAAAGGCTCTGAGCTCAAGAGGGGAGACTCTGTGTTATCCAAAAACAGCAAGTGGATTGCTCTCTTTCAGCATGACGGTAACTTTGTCGTCTACCGCACTGAGCCCGTGTGGGCTTCAGACACTTCCGGCATGGATCCAACCCGCCTGTGCATGCAAGGAGACTGCAACCTGGTCATGTACAATGATGAGGACAAGCCCCGCTGGCACACAAACACCTCCAAAGGCGGCTGCAAGACCTGTGTCCTTTCACTGACTGACGAAGGGAAGCTGGTGCTGGAGAAGGATGGCCACCAGCTCTGGAACTCCGACCGCGATCATGGCATGAAGTGACGCATTTGAAAGCCAAACTCTCATCACTGGGCGTTTCCAACCCTGTCCTGTAAACTGGGTTCAAATAAAAGAAATGTTTCACCAGTTCAAAAAAAAAAAAAA] [+] EMBL AB089821 [CTTCTGCTTGCAGTCTGGTTTGGGTGCTACACTAAAGCTACAACCATGTCCGTCACTGTCTTGGAGAATGGCTCTGAGCTCAAGAGGGGAGACTCTGTGTTATCCAAAAACAGCCAGTGGATTGCTCTCTTTCAGCATGACGGTAACTTTGTCGTCTACCGCACTGAGCCCGTGTGGGCTTCAGACACTTCCGGCATGGATCCAACCCGCCTGTGCATGCAAGAAGACTGCAACCTGGTCATGTACAATGATGAGGACAAGCCCCGCTGGCACACAAACACCTCCAAAGGCGGCCGCAACACCTGTGTCCTTTCACTGACTGACGAAGGGAAGCTGGTGCTGAAGAAGGATTGCCAGCAGCTCTGGAACTCCGATCGCGATCATGGCATGAAGTGACGCATTTGAAAGCCAAACTCTTATCACTGGGCGTTTCCAACCCTGTCCTGTAAACTGGGTTCAAATAAAAGAAATGTTTCACCAGTTCAAAAAAAAAAAAAA] [+] EMBL AB089820 [CTTCTGCTTGCAGTCTAGTTTGGGTGCTACACTAAAGCTATAACCATGTCCATCAATGTCTTAGAGAAAGGCTCTGAGCTCAAGAGGGGAGACTCTGTGTTATCCAAAAACAGCAAGTGGATTGCTCTCTTTCAGCATGACGGTAACTTTGTCGTCTACCGCACTGAGCCCGTGTGGGCTTCAGACACTTCCGGCATGGATCCAACCCGCCTGTGCATGCAAGGAGACTGCAACCTGGTCATGTACAATGATGAGGACAAGCCCCGCTGGCACACAAACACCTCCAAAGGCGGCTGCAAGACCTGTGTCCTTTCACTGACTGACGAAGGGAAGCTGGTGCTGGAGAAGGATGGCCACCAGCTCTGGAACTCCGACCGCGATCATGGCATGAAGTGACGCATTTGAAAGCCAAACTCTCATCACTGGGCGTTTCCAACCCTGTCCTGTAAACTGGGTTCAAATAAAAGAAATGTTTCACCAGTCCAAAAAAAAAAAAAA] [+] EMBL BU805728 [ TCTGCTTGCAGTCTGGTTTGGGTGCTACACTAAAGCTATAACCATGTCCATCAATGTCTTAGAGAAAGGCTCTGAGCTCAAGAGGGGAGACTCTGTGTTATCCAAAAACAGCCAGTGGATTGCTCTCTTTCAGCAAGACGGTAACTTTGTCGTCTACCGCACTGAGCCCATGTGGGCTTCAGACACTTTCGGCATGGATCCAACCCGCCTGTGCATGCAAGGAGACTGCAACCTGGTCATGTACAATGATGAGGACAAGCCCCGCTGGCACACAAACACCTCCAAAGGCAGCTGCAAGACCTGTGTCCTTTCACTGACTGACGAAGGGCAGCTGGTGCTGAAGAAGGATGGCCAGGAGATTTGGAACTCTGACCACGATCATGGCATGAAGTGATGCATTTGAAAGCCAAACTCTCATCACTGGGCGTTTCCAACCCTGTCCTGTAAACTGGGTTCAAATAAAAGAAATGTTTCACCAGTTCACAA ] [+] EMBL CA589181 [ TCTGCTTGCAGTCTAGTTTGGGTGCTACACTAAAGCTATAACCATGTCCATCAATGTCTTAGAGAAAGGCTCTGAGCTCAAGAGGGGAGACTCTGTGTTATCCAAAAACAGCAAGTGGATTGCTCTCTTTCAGCATGACGGTAACTTTGTCGTCTACCGCACTGAGCCCGTGTGGGCTTCAGACACTTCCGGCATGGATCCAACCCGCCTGTGCATGCAAGGAGACTGCAACCTGGTCATGTACAATGATGAGGACAAGCCCCGCTGGCACACAAACACCTCCAAAGGCGGCTGCAAGACCTGTGTCCTTTCACTGACTGACGAAGGGAAGCTGGTGCTGGAGAAGGATGGCCACCAGCTCTGGAACTCCGACCGCGATCATGGCATGAAGTGACGCATTTGAAAGCCAAACTCTCATCACTGGGCGTTTCCAACCCTGTCCTGTAAACTGGGTTCAAATAAA ] [+] EMBL CA591190 [ TCTGCTTGCAGTCTAGTTTGGGTGCTACACTAAAGCTATAACCATGTCCATCAATGTCTTAGAGAAAGGCTCTGAGCTCAAGAGGGGAGACTCTGTGTTATCCAAAAACAGCAAGTGGATTGCTCTCTTTCAGCATGACGGTAACTTTGTCGTCTACCGCACTGAGCCCGTGTGGGCTTCAGACACTTCCGGCATGGATCCAACCCGCCTGTGCATGCAAGGAGACTGCAACCTGGTCATGTACAATGATGAGGACAAGCCCCGCTGGCACACAAACACCTCCAAAGGCGGCTGCAAGACCTGTGTCCTTTCACTGACTGACGAAGGGAAGCTGGTGCTGGAGAAGGATGGCCACCAGCTCTGGAACTCCGACCGCGATCATGGCATGAAGTGACGCATTTGAAAGCCAAACTCTCATCACTGGGCGTTTCCAACCCTGTCCTGTAAACTGGGTTCAAATAA ] [+] EMBL CA844796 [ gcacGAGTGCAGTCTGGTTTGGGTGCTACACTAAAGCTATAACCATGTCCATCAATGTCTTAGAGAAAGGCTCTGAGCTCAAGAGGGGAGACTCTGTGTTATCCAAAAACAGCCAGTGGATTGCTCTCTTTCAGCAAGACGGTAACTTTGTCGTCTACCGCACTGAGCCCATGTGGGCTTCAGACACTTTCGGCATGGATCCAACCCGCCTGTGCATGCAAGGAGACTGCTTTCTGGTCATGTACAATGATGAGGACAAGCCCCGCTGGCACACAAACACCTCCAAAGGCAGCTGCAAGACCTGTGTCCTTTCACTGACTGACGAAGGGCAGCTGGTGCTGAAGAAGGATGGCCAGGAGATTTGGAACTCTGACCACGATCATGGCATGAAGTGATGCATTTGAAAGCCAAACTCTCATCACTGGGCGTTTCCAACCCTGTCCTGTAAA ] [+] EMBL CA845036 [ TTTGGGTGCTACACTAAAGCTACAACCATGTCCGTCACAGTCTTGGAGAATGGCTCTGAGCTCAAGAGGGGAGACTCTGTGTTATCCAAAAACAGCCAGTGGATTGCTCTCTTTCAGCATGACGGTAACTTTGTCGTCTACCGCACTGAGCCCGTGTGGGCTTCAGACACTTCCGGCATGGATCCAACCCGCCTGTGCATGCAAGAAGACTGCAACCTGGTCATGTACAATGATGAGGACAAGCCCCGCTGGCACACAAACACCTCCAAAGGCGGCCGCAACACCTGTGTCCTTTCACTGACTGACGAAGGGAAGCTGGTGCTGAAGAAGGATTGCCAGCAGCTCTGGAACTCCGATCGCGATCATGGCATGAAGTGACGCATTTGAAAGCCAAACTCTTATCACTGGGCGTTTCCAACCCTGTCCTGTAAACTGGGTTCAAATAA ] [+] EMBL FR0061168 [ TAACCATGCCCATCAATGTCTTATAGAAAGGCTCTGAGCTCAAGAGGGGAGAGTCTGTGTTATCCAAAAACAGCAAGTGGATTGCTCTCTTTCAGCATGACGGTAACTTTGTCGTCTACCGCACTGAGCCCGTGTGGGCTTCAGACACTTCCGGCATGGATCCAACCCGCCTGTGCATGCAAGGAGACTGCAACCTGGTCATGTACAATGATGAGGACAAGCCCCGCTGGCACACAAACACCTCCAAAGGCGGCTGCAAGACCTGTGTCCTTTCACTGACTGACGAAGGGAAGCTGGTGCTGGAGAAGGATGCCCACCAGCTCTGGAACTCCGACCGCGATCATGGCATGAAGGGACGCATTTGAAAGCCAAACTCT ] [-] EMBL CA332650 [ AACCATGTCCATCAATGTCTTAGAGAAAGGCTCTGAGCTCAAGAGGGGAGACTCTGTGTTATCCAAAAACAGCAAGTGGATTGCTCTCTTTCAGCATGACGGTAACTTTGTCGTCTACCGCACTGAGCCCGTGTGGGCTTCAGACACTTCCGGCATGGATCCAACCCGCCTGTGCATGCAAGGAGACTGCAACCTGGTCATGTACAATGATGAGGACAAGCCCCGCTGGCACACAAACACCTCCAAAGGCGGCTGCAAGACCTGTGTCCTTTCACTGACTGACGAAGGGAAGCTGGTGCTGGAGAAGGATGGCCACCAGCTCTGGAACTCCGACCGCGATCATGGCATGAAGTGACGCATTTGAAAGCCAAACTCTCGTCACTGGGCGTTTCCAACCCTGTCCTGTAAACTGGGTTCAAATAAAAGAAATGTTTCACC ] [+] EMBL CA589437 [ CATCAATGTCTTAGAGAAAGGCTCTGAGCTCAAGAGGGGAGACTCTGTGTTATCCAAAAACAGCAAGTGGATTGCTCTCTTTCAGCATGACGGTAACTTTGTCGTCTACCGCACTGAGCCCGTGTGGGCTTCAGACACTTCCGGCATGGATCCAACCCGCCTGTGCATGCAAGGAGACTGCAACCTGGTCATGTACTTTGATGAGGACAAGCCCCGCTGGCACACAAACACCTCCAAAGGCGGCTGCAAGACCTGTGTCCTTTCACTGACTGACGAAGGGAAGCTGGTGCTGGAGAAGGATGGCCACCAGCTCTGGAACTCCGACCGCGATCATGGCATGAAGTGACGCATTTGAAAGCCAAACTCTCGTCACTGGGCGTTTCCAACCCTGTCCTGTAAACTGGGTTCAAATAAAAGAAATGTTTCACCAGTTAAAA ] [-] EMBL CA332422 [ AATGTCTTAGAGAAAGGCTCTGAGCTCAAGAGGGGAGACTCTGTGTTATCCAAAAACAGCAAGTGGATTGCTCTCTTTCAGCATGACGGTAACTTTGTCGTCTACCGCACTGAGCCCGTGTGGGCTTCAGACACTTCCGGCATGGATCCAACCCGCCTGTGCATGCAAGGAGACTGCAACCTGGTCATGTACAATGATGAGGACAAGCCCCGCTGGCACACAAACACCTCCAAAGGCGGCTGCAAGACCTGTGTCCTTTCACTGACTGACGAAGGGAAGCTGGTGCTGGAGAAGGATGGCCACCAGCTCTGGAACTCCGACCGCGATCATGGCATGAAGTGACGCATTTGAAAGCCAAACTCTCATCACTGGGCGTTTCCAACCCTGTCCTGTAAACTGGGTTCAAATAAAAGAAATGTTTCACCAG ] [+] EMBL CA847100 [ cTTACAAGGAGAATGGNTCTGAGCTCAAGAGGGGAGATCTTGTGATAGCCAAAAACAGCCAGTGGATTGCTCTCTTTCAGCATGACGGTAACTTTGTCGTCTACCGCACTGAGCCCGTGTGGGCTTCAGACACTTCCGGCATGGATCCAACCCGCCTGTGCATGCAAGAAGACTGCAACCTGGTCATGTACAATGATGAGGACAAGCCCCGCTGGCACACAAACACCTCCAAAGGCGGCCGCAACACCTGTGTCCTTTCACTGACTGACGAAGGGAAGCTGGTGCTGAAGAAGGATTGCCAGCAGCTCTGGAACTCCGATCGCGATCATGGCATGAAGTGACGCATTTGAAAGCCAAACTCTTATCACTGGGCGTTTCCAACCCTGTCCTGTAAACTGGGTTCAAATAAAAGAAATGTTTCACCAGTT ] [+] EMBL FR0056873 [ TCTTGGAGAATGGCTCTGAGCTCAAGAGGGGAGACTCTGTGTTATCCAAAAACAGCCAGTGGATTGCTCTCTTTCAGCATGACGGTAACTTTGTCGTCTACCGCACTGAGCCCGTGTGGGCTTCAGACACTTCCGGCATGGATCCAACCCGCCTGTGCATGCAAGAAGACTGCAACCTGGTCATGTACAATGATGAGGACAAGCCCCGCTGGCACACAAACACCTCCAAAGGCGGCCGCAACACCTGTGTCCTTTCACTGACTGACGAAGGGAAGCTGGTGCTGAAGAAGGATTGCCAGCAGCTCTGGAACTCCGATCGCGATCATGGCATGAAGTGACGCATTTGAAAGCCAAACTCTTATCACTGGGCGT ] consensusID : consensus_2731#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 435 fasta sequence [CTCCTCTTGGTCTGATCAGGGTGCAGCAGTCAAGCCTAATTATGAGCAGGAAGATCATCTCCAAAGGTGAGAAGCTCCTCAAAGGAGACTGCCTTGTATCCGAAAATGGAAATTGGAAAGTGATTTTCCAGCACGACGGCAACTTTGTCATCTATGGCTGGGATGCCAAGTGGGCGTCAAACACTTGGAAATCAGATGCAACGCGCCTGTGCATGCAAGAAGACTGCAACCTGGTCATGTACAATGATGATAACAAGCCCCGCTGGCACACAAACACACACAGTCCAAGCAGTTCGACGTGTTCTCTTACCCTGACCAACGAGGGCAGACTGGAACTGCAGAAAGACGGCAAAATGATTTGGAGCTCCGATGTCGACCATGGTTCTAAATAATGCTTTTCAAACATCCGAAGTTCCTGATGAACTGGGATCAAAT] [+] EMBL CA588958 [CTCCTCTTGGTCTGATCAGGGTGCAGCAGTCAAGCCTAATTATGAGCAGGAAGATCATCTCCAAAGGTGAGAAGCTCCTCAAAGGAGACTGCCTTGTATCCGAAAATGGAAATTGGAAAGTGATTTTCCAGCACGACGGCAACTTTGTCATCTATGGCTGGGATGCCAAGTGGGCGTCAAACACTTGGAAATCAGATGCAACGCGCCTGTGCATGCAAGAAGACTGCAACCTGGTCATGTACAATGATGATAACAAGCCCCGCTGGCACATAAACACACACAGTCCAAGCAGTTCGACGTGTTCTCTTACCCTGACCAACGAGGGCAGACTGGAACTGCAGAAAGACGGCAAAATGATTTGGAGCTCCGATGTCGACCATGGTTCTAAATAATGCTTTTCAAACATCCGAAGTTCCTGATGAACTGGGATCAAAT] [+] EMBL FR0058682 [ GCAGGAAGATCATCTCCAAAGGTGAGAAGCTCCTCAAAGGAGACTGCCTTGTATCCGAAAATGGAAATTGGAAAGTGATTTTCCAGCACGACGGCAACTTTGTCATCTATGGCTGGGATGCCAAGTGGGCGTCAAACACTTGGAAATCAGATGCAACGCGCCTGTGCATGCAAGAAGACTGCAACCTGGTCATGTACAATGATGATAACAAGCCCCGCTGGCACACAAACACACACAGTCCAAGCAGTTCGACGTGTTCTCTTACCCTGACCAACGAGGGCAGACTGGAACTGCAGAAAGACGGCAAAATGATTTGGAGCTCCGATGTCGACCATTGTTCTAAATAATGCTTTTCAAACATCCGAAGTTCCTGATGAACTt ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2731#0 CTTCTGCTTGCAGTCTGGTTTGGGTGCTACACTAAAGCTATAACCATGTCCATCAATGTC 60 consensus_2731#1 ---CTCCTCTTGGTCTGATCAGGGTGCAGCAGTCAAGCC-TAATTATGAGCAGGAAGATC 56 ** ** ***** * ****** ** * **** *** *** ** ** ** consensus_2731#0 TTAGAGAAAGGCTCTGAGCTCAAGAGGGGAGACTCTGTGTTATCCAAAAACAGCAAGTGG 120 consensus_2731#1 ATCTCCAAAGGTGAGAAGCTCCTCAAAGGAGACTGCCTTGTATCCGAAAATGGAAATTGG 116 * ***** ***** * ******* * ***** **** * ** *** consensus_2731#0 ATTGCTCTCTTTCAGCATGACGGTAACTTTGTCGTCTACCGCACTGAGCCCGTGTGGGCT 180 consensus_2731#1 AAAGTGATTTTCCAGCACGACGGCAACTTTGTCATCTATGGCTGGGATGCCAAGTGGGCG 176 * * * ** ***** ***** ********* **** ** ** ** ****** consensus_2731#0 TCAGACACTTCCGGCATGGATCCAACCCGCCTGTGCATGCAAGGAGACTGCAACCTGGTC 240 consensus_2731#1 TCAAACACTTGGAAATCAGATGCAACGCGCCTGTGCATGCAAGAAGACTGCAACCTGGTC 236 *** ****** *** **** **************** **************** consensus_2731#0 ATGTACAATGATGAGGACAAGCCCCGCTGGCACACAAACACCTCCAAAGGCGGCTGCAAG 300 consensus_2731#1 ATGTACAATGATGATAACAAGCCCCGCTGGCACACAAACACACACAGTCCAAGCAGTTCG 296 ************** ************************* ** ** * * consensus_2731#0 ACCTGTGTCCTTTCACTGACTGACGAAGGGAAGCTGGTGCTGGAGAAGGATGGCCACCAG 360 consensus_2731#1 ACGTGTTCTCTTACCCTGACCAACGAGGGCAGACTGGAACTGCAGAAAGACGGCAAAATG 356 ** *** *** * ***** **** ** * **** *** **** ** *** * * consensus_2731#0 CTCTGGAACTCCGACCGCGATCATGGCATGAAGTGACGCATTTGAAAGCCAAACTCTCAT 420 consensus_2731#1 ATTTGGAGCTCCGATGTCGACCATGGTTCTAAATAATGCTTTTCAAA------------- 403 * **** ****** *** ***** ** * * ** *** *** consensus_2731#0 CACTGGGCGTTTCCAACCCTGTCCTGTAAACTGGGTTCAAATAAAAGAAATGTTTCACCA 480 consensus_2731#1 CATCCGAAGTTCCTGA----------TGAACTGGGATCAAAT------------------ 435 ** * *** * * * ******* ****** consensus_2731#0 GTTCAAAAAAAAAAAAAA 498 consensus_2731#1 ------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |