These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2742#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 468 fasta sequence [GGAACGCGTTACGGCGCCTCGCTGAGGAAGATGGTGAAGAAAATTGAAATCTCCCAGCATTCAAAGTACACCTGCTCTTTCTGTGGCAAGACCAAGATGAAGAGAAGGGCTGTTGGAATCTGGCACTGTGGGTCCTGCAGGAAGACGGTGGCTGGAGGTGCCTGGACGTATAACACAACGTCAGCCGTCACAGTCAAGTCTGCAATCAGGAGACTGAGAGAGTTGAAGGACCAGTAAACCATGTCATTCACTGGTGGATTTGGGACTTTTTCTATAATTTATCCGACCTGGACATGGCTACATCAAAAATAAAATGTTCTGGACCGGAAAACTGTCTCTGTTAATCTATTGTTGTCGGCAATAATACAACCCTCTGATAACGTTCCAAATGAAGGATTACCCAAGTTAAAAGCTTTTTCCCCTCAAAAAAAAAAAAANANAAAAAAAGGGAAAAAAAATTTTTAAAAA] [+] EMBL FR0057808 [GGAACGCGTTACGGCGCCTCGCTGAGGAAGATGGTGAAGAAAATTGAAATCTCCCAGCATTCAAAGTACACCTGCTCTTTCTGTGGCAAGACCAAGATGAAGAGAAGGGCTGTTGGAATCTGGCACTGTGGGTCCTGCAGGAAGACGGTGGCTGGAGGTGCCTGGACGTATAACACAACGTCAGCCGTCACAGTCAAGTCTGCAATCAGGAGACTGAGAGAGTTGAAGGACCAGTAAACCATGTCATTCACTGGTGGATTTGGGACTTTTTCTATAATTTATCCGACCTGGACATGGCTACATCAAAAATAAAATGTTCTGGACCGGAAAACTGTCTCTGTTAATCTATTGTTGTCGGCAATAATACAACCCTCTGATAACGTTCCAAATGAAGGATTACCCAAGTTAAAAGCTTTTTCCCCTCAAAAAAAAAAAAANANAAAAAAAGGGAAAAAAAATTTTTAAAAA] [+] EMBL CA330341 [ GCAATCAGGAGACTGAGAGAGTTGAAGGACCAGTAAACCATGTCATTCACTGGTGGATTTGGGACTTTTTCTATAATTTATCCGACCTGGACATGGCTACATCAAAAATAAAATGTTCTGGACCGGA ] [+] EMBL CA330564 [ TGAGAGAGTTGAAGGACCAGTAAACCATGTCATTCACTGGTGGATTTGGGACTTTTTCTATAATTTATCCGACCTGGACATGGCTACATCAAAAATAAAATGTTCTGGACCGGAA ] consensusID : consensus_2742#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 421 fasta sequence [GGCCAAGCGCACCA-AGAAGGTGGGGATCGTTGGTAAA-TATGGAACGCGTTACGGCGCCTCGCTGAGGAAGATGGTGAAGAAAATTGAAATCTCCCAGCATTCAAAGTACACCTGCTCTTTCTGTGGCAAGACCAAGATGAAGAGAAGGGCTGTTGGAATCTGGCACTGTGGGTCCTGCAGGAAGACGGTGGCTGGAGGTGCCTGGACGTATAACACAACGTCAGCCGTCACAGTCAAGTCTGCAATCAGGAGACTGAGAGAGTTGAAGGACCAGTAAACCATGTCATTCACTGGTGGATTTGGGACTTTTTCTATAATTTATCCGACCTGGACATGGCTACATCAAAAATAAAATGTTCTGGACCGGAAAAAAAAAGGGGAAAGGGAACCCCAGGGGGGGCCCGGTACCCAATTTTTGGCC] [+] EMBL CA846958 [GGCCAAGCGCACCA AGAAGGTGGGGATCGTTGTTAAACTCTGGAACGCGTTACGGCGCCTCGCTGAGGAAGATGGTGAAGAAAATTGAAATCTCCCAGCATTCAAAGTACACCTGCTCTTTCTGTGGCAAGACCAAGATGAAGAGAAGGGCTGTTGGAATCTGGCACTGTGGGTCCTGCAGGAAGACGGTGGCTGGAGGTGCCTGGACGTATAACACAACGTCAGCCGTCACAGTCAAGTCT TTTTCAGGAGACTGAGAGAGTTGAAGGACCAGTAAACCATGTCATTCACTGGTGGATTTGGGACTTTTTCTATAATTTATCCGACCTGGACATGGCTACATCAAAAATAAAATGTTCTGGACCGGAAAAAAA ] [+] EMBL FR0055487 [ GCCAAGCGGACCATAGAAGGTGGGGATCGATGGTAAA TATGGAACGCGTTACGGCGCCTCGCTGAGGAAGATGGTGAAGAAAATTGACATCTCGCAGCATTCAGAGTACACCTGCTCTTTCTGTGGCAAGACCAAGATGAAGAGAAGGGCTGTTGGAATCTGGCACTGTGGGTCCTGCAGGAAGACGGTGGCTGGAGGTGCCTGGACGTATAACACAACGTCAGCCGTCACAGTCAAGTCTGCAATCAGGAGACTGAGAGAGTTGAAGGACCAGTAGACCATGTCATTCACTGGTGGATTTGGGACTTTTTCTATAATTTATCCGACCTGGACATGGCTACATCAAAAATAAAA ] [+] EMBL FR0058311 [ AGCGCACCA AGAAGGTGGGTATCTTTGGTAAA TATGGAACGCGTTACGGGGCCTCGCTGAGGAAGATGGTGAACAAAATTGAAATCTCCCAGCATTCAAAGTACACCTGCTCTTTCTGTGGCAAGACCAAGATGAAGAGAAGGGCTGTTGGAATCTGGCACTGTGGGTCCTGCAGGAAGACGGTGGCTGGAGGTGCCAGGACGTATAACACAACGTCAGCCGTCACAGTCAAGTCTGCAATCAGGAGACTGAGAGAGTTGAAGGACCAGTAAACCATGTCATTCACTGGTGGATTTGGGACTTTTTCTATAATTTATCCGACCTGGACATGGCTACATCAAAAATAAAATGTTCTGGACCc ] [+] EMBL CA329894 [ CGCACCA AGAAGGTGGGGATCGTTGGTAAA TATGGAACGCGTTACGGCGCCTCGCTGAGGAAGATGGTGAAGAAAATTGAAATCTCCCAGCATTCAAAGTACACCTGCTCTTTCTGTGGCAAGACCAAGATGAAGAGAAGGGCTGTTGGAATCTGGCACTGTGGGTCCTGCAGGAAGACGGTGGCTGGAGGTGCCTGGACGTATAACACAACGTCAGCCGTCACAGTCAAGTCTGCAATCAGGAGACTGAGAGAGTTGAAGGACCAGTAAACCATGTCATTCACTGGTGGATTTGGGACTTTTTCTATAATTTATCCGACCTGGACATGGCTACATCAAAAATAAAATGTTCTGGACCGGAAAAA ] [+] EMBL CA846870 [ AGGTGGGGATCGTTGGTAAA TATGGAACGCGTTACGGCGCCTCGCTGAGGAAGATGGTGAAGAAAATTGAAATCTCCCATCATTCAAAGTACACCTGCTCTTTCTGTGGCAAGACCAAGATGAAGAGAACGGCTGTTGGAATCTGGCACTGTGGGTCCTGCAGGAAGACG ] [+] EMBL CA845173 [ GGGATCGTTGGTAAA TATGGAACGCGTTACGGCGCCTCGCTGAGGAAGATGGTGAAGAAAATTGAAATCTCCCAGCATTCAAAGTACACCTGCTCTTTCTGTGGCAAGACCAAGATGAAGAGAAGGGCTGTTGGAATCTGGCACTGTGGGTCCTGCAGGAAGACGGTGGCTGGAGGTGCCTGGACGTATAACACAACGTCAGCCGTCACAGTCAAGTCTGCAATCAGGAGACTGAGAGAGTTGAAGGACCAGTAAACCATGTCATTCACTGGTGGATTTGGGACTTTTTCTATAATTTATCCGACCTGGACATGGCTACATCAAAAATAAAATGTTCTGGACCG ] [+] EMBL FR0056915 [ GATCGTTGGTAAA TATGGAACGCGTTACGGCGCCTCGCTGAGGAAGATGGTGAAGAAAATTGAAATCTCCCAGCATTCAAAGTACACCTGCTCTTTCTGTGGCAAGACCAAGATGAAGAGAAGGGCTGTTGGAATCTGGCACTGTGGGTCCTGCAGGAAGACGGTGGCTGGAGGTGCCTGGACGTATAACACAACGTCAGCCGTCACAGTCAAGTCTGCAGTCAGGAGACTGAGAGAGTTGAAGGACCAGTAGACCATGTCATTCACTGGTGGATTTGGGACTTTTTCTATAATTTAGCCGACCTGGACATGGCTACATCAAAGGTAAAATG ] [+] EMBL FR0056237 [ TTGGTAAA TATGGAACGCGTTACGGCGCCTCGCTGAGGAAGATGGTGATGAAAATTGATATCTCCCAGCATTCAGCGTACAGCTGCTCTTTCTGTGGCAGGACCAAGATGAGGAGAGGGGCTGTTGGGCTCTGGCACTGTGGGTCCTGCAGGAACACGGTGGCTGGAGGTGCCTGGCCGTATAACACAGCGTCAGCCGTCACAGTCAAGTCTGCAc ] [+] EMBL FR0056715 [ TTGGTAAA TATGGAACGCGTTACGGCGCCTCGCTGAGGAAGATGGTGAAGAAAATTGAAATCTCCCAGCATTCAAAGTACACCTGCTCTTTCTGTGGCAAGACCAAGATGAAGAGAAGGGCTGTTGGAATCTGGCACTGTGGGTCCTGCAGGAAGACGGTGGCTGGAGGTGCCTGGACGTATAACACAACGTCAGCCGTCACAGTCAAGTCTGCAATCAGGAGACTGAGAGAGTTGAAGGACCAGTAGACCATGTCATTCACTGGTGGATTTGGGACTTTTTCTATAATTTATCCGACCTGGACATGGCTACATCAAAAATAAAATGTTCTGGACCGGAAAAAAGGGGGGGATGGGt ] [+] EMBL FR0055490 [ GGTAAA TATGGAACGCGTTACGGCGCCTCGCTGAGGAAGATGGTGACGAGAATTGAAATCTCCCAGCATTCAAAGTACACCTGCTCTTTCTGTGGCAAGACCAAGATGACGAGAAGGGCTGTTGGAATCTGGCACTGTGGGTCCTGCATGAAGACGGTGGCTGGAGGTGCCTGGACCTATAACACAACGTCAGCCGTCACAGTCAAGTCTGCAATCAGGAGACTGAGAGAGTTGAAGGACCAGTACACCATGTCATTCACTGGT ] [+] EMBL FR0055805 [ TAAA TATGGAACGCGTTACGGCGCCTCGCTGAGGAAGATGGTGAAGAAAATTGAAATCTCCCAGCATTCAAAGTACACCTGCTCTTTCTGTGGCAAGACCAAGATGAAGAGAAGGGCTGTTGGAATCTGGCACTGTGGGTCCTGCAGGAAGACGGTGGCTGGAGGTGCCTGGACGTATAACACAACGTCAGCCGTCACAGTCAAGTCTGCAATCAGGAGACTGAGAGAGTTGAAGGACCAGTAAACCATGTCATTCACTGGTGGATTTGGGACTTTTTCTATAATTTATCCGACCTGGACATGGCTACATCAAAAATAAAATGTTCTGGACCGGAAAAAAAAACGGCAAAGGGAATCCCAGCG ] [+] EMBL FR0056433 [ TATGGAACGCGTTACGGCGCCTCGCTGAGGAAGATGGTGAAGAAAATTGAAATCTCCCAGCATTCAAAGTACACCTGCTCTTTCTGTGGCAAGACCAAGATGAAGAGAAGGGCTGTTGGAATCTGGCACTGTGGGTCCTGCAGGAAGACGGTGGCTGGAGGTGCCTGGACGTATAACACAACGTCAGCCGTCACAGTCAAGTCTGCAATCAGGAGACTGAGAGAGTTGAAGGACCAGTAAACCATGTCATTCACTGGTGGATTTGGGACTTTTTCTATAATTTATCCGACCTGGACATGGCTACATCAAAAATTAAATGTTCTGGACCGGA ] [+] EMBL FR0056181 [ CCAGCATTCAAAGTACACCTGCTCTTTCTGTGGCAAGACCAAGATGAAGAGAAGGGCTGTTGGAATCTGGCACTGTGGGTCCTGCAGGAAGACGGTGGCTGGAGGTGCCTGGACGTATAACACAACGTCAGCCGTCACAGTCAAGTCTGCAATCAGGAGACTGAGAGAGTTGAAGGACCAGTAAACCATGTCATTCACTGGTGGATTTGGGACTTTTTCTATAATTTATCCGACCTGGACATGGCTACATCAAAAATAAAATGTTCTGGACCGGAAAAAAAAAAAAAAAAAAAAACCCCAGGGGGGGCCCGGTACCCAATTTTTGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2742#0 ----------------------------------------GGAACGCGTTACGGCGCCTC 20 consensus_2742#1 GGCCAAGCGCACCAAGAAGGTGGGGATCGTTGGTAAATATGGAACGCGTTACGGCGCCTC 60 ******************** consensus_2742#0 GCTGAGGAAGATGGTGAAGAAAATTGAAATCTCCCAGCATTCAAAGTACACCTGCTCTTT 80 consensus_2742#1 GCTGAGGAAGATGGTGAAGAAAATTGAAATCTCCCAGCATTCAAAGTACACCTGCTCTTT 120 ************************************************************ consensus_2742#0 CTGTGGCAAGACCAAGATGAAGAGAAGGGCTGTTGGAATCTGGCACTGTGGGTCCTGCAG 140 consensus_2742#1 CTGTGGCAAGACCAAGATGAAGAGAAGGGCTGTTGGAATCTGGCACTGTGGGTCCTGCAG 180 ************************************************************ consensus_2742#0 GAAGACGGTGGCTGGAGGTGCCTGGACGTATAACACAACGTCAGCCGTCACAGTCAAGTC 200 consensus_2742#1 GAAGACGGTGGCTGGAGGTGCCTGGACGTATAACACAACGTCAGCCGTCACAGTCAAGTC 240 ************************************************************ consensus_2742#0 TGCAATCAGGAGACTGAGAGAGTTGAAGGACCAGTAAACCATGTCATTCACTGGTGGATT 260 consensus_2742#1 TGCAATCAGGAGACTGAGAGAGTTGAAGGACCAGTAAACCATGTCATTCACTGGTGGATT 300 ************************************************************ consensus_2742#0 TGGGACTTTTTCTATAATTTATCCGACCTGGACATGGCTACATCAAAAATAAAATGTTCT 320 consensus_2742#1 TGGGACTTTTTCTATAATTTATCCGACCTGGACATGGCTACATCAAAAATAAAATGTTCT 360 ************************************************************ consensus_2742#0 GGACCGGAAAACTGTCTCTGTTAATCTATTGTTGTCGGCAATAATACAACCCTCTGATAA 380 consensus_2742#1 GGACCGGAAAAAAAAAGGGGAAAGGGAACC----CCAGGGGGGGCCCGGTACCCAATTTT 416 *********** * * * * * * * * * consensus_2742#0 CGTTCCAAATGAAGGATTACCCAAGTTAAAAGCTTTTTCCCCTCAAAAAAAAAAAAANAN 440 consensus_2742#1 TGGCC------------------------------------------------------- 421 * * consensus_2742#0 AAAAAAAGGGAAAAAAAATTTTTAAAAA 468 consensus_2742#1 ---------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |