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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2744#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 823 fasta sequence
[ATCTCCGCCCCGCCTCCGTCCCCCGGGCTCCCCTGTCACATAAAAGCAACTCACCGCACTTCGTCTTTGATCTCGGCTCTGTTGTCGGGCTCTGTGTCTCGTCTCGTGAGCAGTTTTGATCTTTTGTCCCGTTTCTCCTCGCGCGTGCACCATG-GCTCAGATCAACGCGTGC-CTCAAACGTGTCTTCATCGTCTTTAACATCTTCTTCGCGGTGGTGGGGGCGGTCATCCTGGGGCTCACGCTGCTGTCCCAGGTGGTCATCAGCAGCCATGGGGGAGACCAGGTCGCAGGCCGCACTGCCGGCCTCATCATCCTTTACATCATGGGCAGCGTTACCATGGTGATCGCCATCCTGGGAGCCTATGGGGCGCACAAAGAGAACCGAGTGTGTCTGATTGTGTTCC-TGGTGTGTATGGTGATTGGGAGTCTGATCACACTCCGTACTGGGATCCCTGCTGTCATCGCCCGCTCACAGATTGAGGGCCTGTTGCGTGAGAAGTTCAGCGAGCTGGTGCCTCTGGACAAAGCCCCGTCAGATGTGAGGGTCATGGCTGATGAGCTGCAGAAGGAGCTCCACTGCTGTGGCCTGTTCAGTTACAAGGACTGGGAGGGAGAGATCCCAGACTCCTGTCTGTGCAGAGACGACACGGAGAGCGAGTGTCAGCAGATCAGCTACAGGATGACCTTGATGTCAGAGTCCATCTACAGCAAGCCCTGCTTCCCCATCATTGTCTACTTCGTCCTGCTGGTTGCTGACATCATGCTCGCTGTGATCTTCTCTCTGGCCGTTCTGGCGATTCTGGGCGTGACCCTGTCGTCCATC]
[+] EMBL CA591410 [ATCTCCGCCCCGCCTCCGTCCCCCGGGCTCCCCTGTCACATAAAAGCAACTCACCGCACTTCGTCTTTGATCTCGTCTCTGTTGTCGGGCTCTGTGTCTCGTCTCGTGAGCAGTTTTGATCTTTTGTCCCGTTTCTCCTCGCGCGTGCACCATG GCTCAGATCAACGCGTGC CTCAAACGTGTCTTCATCGTCTTTAACATCTTCTTCGCGGTGGTGGGGGCGGTCATCCTGGGGCTCACGCTGCTGTCCCAGGTGGTCATCAGCAGCCATGGGGGAGACCAGGTCGCAGGCCGCACTGCCGGCCTCATCATCCTTTACATCATGGGCAGCGTTACCATGGTGATCGCCATCCTGGGAGCCTATGGGGCGCACAAAGAGAACCGAGTGTGTCTGATTGTGTTCC TGGTGTGTATGGTGATTGGGAGTCTGATCACACTCCGTACTGGGATCCCTGCTGTCATCGCCCGCTCACAGATTGAGGGCCTGTTGCGTGAGAAGTTCAGCGAGCTGGTGCCTCTGGACAAAGCCCCGTCAGATGTGAGGGTCATGGCTGATGAGCTGCAGAAGGAGCTCCACTGCTGTGGGCTGTTCAGTTACAAGGACTGGGAGGGAGAGATCCCA ]
[+] EMBL FR0062221 [ CGGCTCTTTTGTCGGGCTCTGTGTCTCGTCTCGGGAGCAGTTTTGATCTTTTGTCCCGTCTCTCCTCGCGCGTGCACCATG GCTCAGATCAACGCGTGC CTCAAACGTGTCTTCATCGTCTTTAACATCTTCTTCGCGGTGGNGGGGGCGGTCATCCTGGGGCTCACGCTGCTGTCCCAGGTGGTCATCAGCAGCCATGGGGGAGACCAGGTCGCAGGCCGCACTGCCGGCCTCATCATCCTTTACATCATGGGCAGCGGTACCATGGTGATCGCCATCCTGGGAGCCTATGGGGCGCACAAAGAGAACCGAGTGTG ]
[+] EMBL CA846203 [ cTCTGTATCTGTGTCTCGTCTCGTGAGCAGTTTTGATCTTTTCTCTCGATTCTCCTCGCGCGTGCACCATG GCTCAGATCAACGCGTGC CTCAAACGTGTCTTCATCGTCTTTAACATCTTCTTCGCGGTGGTGGGGGCGGTCATCCTGGGGCTCACGCTGCTGTCCCAGGTGGTCATCAGCAGCCATGGGGGAGACCAGGTCGCAGGCCGCACTGCCGGCCTCATCATCCTTTACATCATGGGCAGCGTTACCATGGTGATCGCCATCCTGGGAGCCTATGGGGCGCACAAAGAGAACCGAGTGTGTCTGATTGTGTTCC TGGTGTGTATGGTGATAGGGAGTCTGATCACACTCCGTACTGGGATCCCTGCTGTCATCGCCCGCTCACAGATTGAGGGCCTGTTGCGTGAGAAGTTCAGCGAGCTGGTGCCTCTGGACAAAGCCCCGTCAGATGTGAGGGTCAT ]
[+] EMBL CA847012 [ aTTTGATCTTTTGTCCCGTTTCTCCTCGCGCGTCTACCATGAGCTCAGATCAACGCGTGC CTCAAACGTGTCTTCATCGTCTTTAACATCTTCTTCGCGGTGGTGGGGGCGGTCATCCTGGGGCTCACGCTGCTGTCCCAGGTGGTCATCAGCAGCCATGGGGGAGACCAGGTCGCAGGCCGCACTGCCGGCCTCATCATCCTTTACATCATGGGCAGCGTTACCATGGTGATCGCCATCCTGGGAGCCTATGGGGCGCACAAAGAGAACCGAGTGTGTCTGATTGTGTTCC TGGTGTGTATGGTGATTGGGAGTCTGATCACACTCCGTACTGGGATCCCTGCTGTCATCGCCCGCTCACAGATTGAGGGCCTGTTGCGTGAGAAGTTCAGCGAGCTGGTGCCTCTGGACAAAGCCCCGTCAGATGTGAGGGTCATGGC ]
[+] EMBL FR0062410 [ TTGTCCCGTTTCTCCTCGCGCGTGCACCATG GCTCAGATCAACGCGTGC CTCAAACGTGTCTTCATCGTCTTTAACATCTTCTTCGCGGNGGTGGGGGCGGTCATCCTGGGGCTCACGCTGCTGTCCCAGGTGGTCATCAGCAGCCATGGGGGAGACCAGGTCGCAGGCCGCACTGCCGGCCTCATCATCCTTTACATCATGGGCAGCGTTACCATGGTGATCGCCATCCTGGGAGCCTATGGGGCGCACAAAGAGAACCGAGTGTGCCTGATTGTGTTCCTTGGTGTGTATGG ]
[+] EMBL FR0062666 [ GCCCCGTTTCTCCTCGCGCGGGCACCATG GCTCAGAGCAACGCGTGC CTCAAACGTGTCTTCATCGTCTTTGACATCTTCTTCGCGGNGGAGGGGGC GACATCCTGGGGCTCACGCTGCTGTCCCAGGTGGTCATCAGCAGCCATGGGGGAGACCAGGTCGCAGGCCGCACTGCCGGCCTCATCATCCTTTACATCATGGGCAGCGTTACCATGGGGAGCGCCATCCTGGGAGCCTATGGGGCGCACAAAGAGACCCGAGCGCGT ]
[+] EMBL CA330774 [ CTCCTCGCGCGTGCTCCATG GCTCAGATCAACGCGTGC CTCAAACGTGTCTTCATCGTCTTTAACATCTTCTTCGCGGTGGTGGGGGCGGTCATCCTGGGGCTCACGCTGCTGTCCCAGGTGGTCATCAGCAGCCATGGGGGAGACCAGGTCGCAGGCCGCACTGCCGGCCTCATCATCCTTTACATCATGGGCAGCGTTACCATGGTGATCGCCATCCTGGGAGCCTATGGGGCGCACAAAGAGAACCGAGTGTGTCTGATTGTGTTCC TGGTGTGTATGGTGATTGGGAGTCTGATCACACTCCGTACTGGGATCCCTGCTGTCATCGCCCGCTCACAGATTGAGGGCCTGTTGCGTGAGAAGTTCAGCGAGCTGGTGCCTCTGGACAAAGCCCCGTCAGATGTGAGGGTCATGGC ]
[+] EMBL FR0062990 [ ATG GCTCAGATCAACGCGTGCGGGGGAACGTGTCTTCAGCGGCTTTAACATCTTCTTCGCGGTGGTGGGGGCGCTCATCCTGGGGCTCACGCTGCTGTCCCAGGTGGTCATCAGCAGCCATGGGGGAGACCAGGTCGCAGGCCGCACTGCCGGCCTCATCATCCTTTACATCATGGGCAGCGGTACCATGGTGATCGCCATCCTGGGAGCCTATGGGGCGCACAAAGAGAACCGAGGGTGGCTGATTGg ]
[+] EMBL FR0062297 [ gAGATCAACGCGTGC CTCAAACGTGTCTTCATCGGCTTTAACATCTTCTTCGCGGTGGTGGGGGCGGTCATCCTGGGCCTCACGCTGCTGTCCCAGGTGGTCATCAGCAGCCATGGGGGAGACCAGGGCGCAGGCCGCACTGCCGGCCTCATCATCCTTTACATCATGGGCAGCGTTACCATGGTGAGCGCCATCCTGGGAGCCTATGGGGCGCCCAAAGAGAACCGAGTGTGTCTGATTGTGTTCC TGGTGTGAATGGGGATTGGGAGTCTGACCACACTCCG ]
[+] EMBL CA845212 [ ACATCATGGGCAGCGTTACCATGGTGATCGCCATCCTGGGAGCCTATGGGGCGCACAAAGAGAACCGAGTGTGTCTGATTGTGTTCC TGGTGTGTATGGTGATTGGGAGTCTGATCACACTCCGTACTGGGATCCCTGCTGTCATCGCCCGCTCACAGATTGAGGGCCTGTTGCGTGAGAAGTTCAGCGAGCTGGTGCCTCTGGACAAAGCCCCGTCAGATGTGAGGGTCATGGCTGATGAGCTGCAGAAGGAGCTCCACTGCTGTGGCCTGTTCAGTTACAAGGACTGGGAGGGAGAGATCCCAGACTCCTGTCTGTGCAGAGACGACACGGAGAGCGAGTGTCAGCAGATCAGCTACAGGATGACCTTGATGTCAGAGTCCATCTACAGCAAGCCCTGCTTCCCCATCATTGTCTACTTCGTCCTGCTGGTTGC ]
[+] EMBL CA845154 [ TCCTGGGAGCCTATGGGGCGCACAAAGAGAACCGAGTGTGTCTGATTGTGTTCC TGGTGTGTATGGTGATTGGGAGTCTGATCACACTCCGTACTGGGATCCCTGCTGTCATCGCCCGCTCACAGATTGAGGGCCTGTTGCGTGAGAAGTTCAGCGAGCTGGTGCCTCTGGACAAAGCCCCGTCAGATGTGAGGGTCATGGCTGATGAGCTGCAGAAGGAGCTCCACTGCTGTGGCCTGTTCAGTTACAAGGACTGGGAGGGAGAGATCCCAGACTCCTGTCTGTGCAGAGACGACACGGAGAGCGAGTGTCAGCAGATCAGCTACAGGATGACCTTGATGTCAGAGTCCATCTACAGCAAGCCCTGCTTCCCCATCATTGTCTACTTCGTCCTGCTGGTTGCTGACATCATGCTCGCTGTGATCTTCTCTCTGGCCGTTCTGGCGATTCTGGGCGTGACCCTGTCGTCCATC]
consensusID : consensus_2744#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 454 fasta sequence
[TTTCAGTTTTAGTTGTTTTTTTAATTAAATCTTTGGAGTTACAGTAACAAGAAAAAGGTGAAAAAGAG-TTCCCTCATCTAAATATTCCGAGCCCACACTGCTGATCGTCGAGG--TTCCGGAACAGAAAACATCACAATAGAAAAACATCTGATTATGGCCAAAGCAGCACAAACAAGTCTTTAGACCTCCAAGCCGAGGCGTTAGAACCACCCAGAGCCACCAGAACCCCCAGGCTCCTCCAGGAGCGCTAGTACAGGGGAGCAGACTGCAGCTCCTGGTACTTGGGCGGGGCCGTGGTGAAGATGGCCGGCACCGTCAGGACGGCGTGGGCTCGGGCCGGGTACCTCAACTGGTGGATCATGATGGACGACAGGGTCACGCCCAGAATCGCCAGAACGGCCAGAGAGAAGGATCACAGCGGAGCATTGATGCCAGCAACCAGCAGGGCGAAGTA]
[-] EMBL CA330172 [TTTCAGTTTTAGTTGTTTTTTTAATTAAATCTTTGGAGTTACAGTAACAAGAAAAAGGTGAAAAAGAG TTCCCTCATCTAAATATTCCGAGCCCACACTGCTGATCGTCGAGGATATCCGGAACAGAAAA ]
[-] EMBL CA847105 [ TTTAGTTGTTTTTTTAATTAAATCTTTGGAGTTACAGTAACAAGAAAAAGGTGAAAAAGAG TTCCCTCATCTAAATATTCCGAGCCCACACTGCTGATCGTCGAGG TTCCGGAACAGAAAACATCACAATAGAAAAACATCTGATTATGGCCAAAGCAGCACAAACAAGTCTAAAGACCTCCAAGCCGAGGCGTTAGAACCACCCAGtt ]
[+] EMBL CA332647 [ TTAGTTGTTTTTTTAATTAAATCTTTGGAGTTACAGTAACAAGAAAAAGGTGAAAAAGAG TTCCCTCATCTAAATATTCCGAGCCCACACTGCTGATCGTCGAGG TTCCGGAACAGAAAACATCACAATAGAAAAACATCTGATTATGGCCAAAGCAGCACAAACAAGTCTTTAGACCTCCAAGCCGAGGCGTTAGAACCACCCAGAACCACCAGAACCCTCCGGCTCCTCCAGGAGCGCTAGTACAGGGGAGCAGACTGCAGCTCCTGGTACTTGGGCGGGGCCGTGGTGAAGATGGCCGGCACCGTCAGGACGGCGTGGGCTCGGGCCGGGTACCTCATCTGGTGGATCATGATGGACGACAGGGTCACGCCCAGAATCGCCAGAACGGCCAGAGAGAA GATCACAGC GAGCA TGATGTCAGCAACCAGCAGGACG ]
[-] EMBL CA845735 [ TGTTTTTTTAATTAAATCTTTGGAGTTACAGTAACAAGAAAAAGGTGAAAATGAGATGGCCTCATCTAAA ]
[-] EMBL FR0055595 [ G TTCCCTCATCTAAATATCCCGAGCCCACACTGCTGATCGTCGAGG TCCCGGAACAGAAAACATCACAATAGAAAAACATCTGATTATGCCCAAAGCAGCACAAGCAAGTCCTTAGACCTCCAACCCGAGGCGTTAGAACCACCCAGAGCCACCAGAACCTCCAGGCTCCTCCAGGAGCGCTAGTACAGGGGAGCAGACTGCAGCTCCTGGTACTTGGGCGGGGCCGTGGTGAAGATGTCCGGCACCGTCAGGACGGCGTGGGCTCGGACCGGGTACCTCAACTGGTGGATCATGATGGACGACAGGGTCACGCCCAGAATCCCCAGAACGGCCAGAGAGAAGGATCACAGCGGAGCATTGATGCCAGCAACCAGCAGGGCGAAGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2744#0 ATCTCCGCCCCGCCTCCGTCCCCCGGGCTCCCCTGTCACATAAAAGCAACTCACCGCACT 60
consensus_2744#1 ------------------------------------------------------------
consensus_2744#0 TCGTCTTTGATCTCGGCTCTGTTGTCGGGCTCTGTGTCTCGTCTCGTGAGCAGTTTTGAT 120
consensus_2744#1 ------------------------------------------------------------
consensus_2744#0 CTTTTGTCCCGTTTCTCCTCGCGCGTGCACCATGGCTCAGATCAACGCGTGCCTCAAACG 180
consensus_2744#1 ------------------------------------------------------------
consensus_2744#0 TGTCTTCATCGTCTTTAACATCTTCTTCGCGGTGGTGGGGGCGGTCATCCTGGGGCTCAC 240
consensus_2744#1 -------------------------------------------------TTTCAGTTTTA 11
* * *
consensus_2744#0 GCTGCTGTCCCAGGTGGTCATCAGCAGCCATGGGGGAGACCAGGTCGCAGGCCGCACTGC 300
consensus_2744#1 GTTGTTTTTTTAATTAAATCTTTGGAGTTACAGTAA----CAAGAAAAAGGTGAAAAAG- 66
* ** * * * * * * ** * * ** * *** * *
consensus_2744#0 CGGCCTCATCATCCTTTACATCATGGGCA-GCGTTACCATGGTGATCGCCATCCTGGGAG 359
consensus_2744#1 -AGTTCCCTCATC-TAAATATTCCGAGCCCACACTGC--TGATCGTCGAGGTTCCGGAAC 122
* * ***** * * ** * ** * * * ** * *** * * ** *
consensus_2744#0 CCTATGGGGCGCACAAAGAGAACCGAGTGTGTCTGATTGTGTTCCTGGT-GTGTATGGTG 418
consensus_2744#1 AGAAAACATCACAATAGAAAAAC-------ATCTGATTATGGCCAAAGCAGCACAAACAA 175
* * ** * * *** ******* ** * * * *
consensus_2744#0 ATTGGGAGTCTGATCACACTCCGTACTGGGATCCCT----GCTGTCATCGCCCGCTCACA 474
consensus_2744#1 GTCTTTAGACCTCCAAGCCGAGGCGTTAGAACCACCCAGAGCCACCAGAACCCCCAGGCT 235
* ** * * * * * * * * * ** ** *** * *
consensus_2744#0 GATTGAGGGCCTGTTGCGTGAGAAGTTCAGCGAGCTGGTGCCTCTGG-ACAAAGCCCCGT 533
consensus_2744#1 CCTCCAGGAGCGCTAGTACAGGGG----AGCAGACTGCAGCTCCTGGTACTTGGGCGGGG 291
* *** * * * * *** *** ** **** ** * * *
consensus_2744#0 CAGATGTGAGGGTCATGGCTGATGAGCTGCAGAAGGAGCTCCACTGCTGTGGCCTGTTCA 593
consensus_2744#1 CCGTGGTGAAG---ATGGCCGGCACCGTCAGGACGGCG---------TGGGCTCGGGCCG 339
* * **** * ***** * * ** ** * ** * * * *
consensus_2744#0 GTTACAAGGACTGGGAGGGAGAGATCCCAGACTCCTGTCTGTGCAGAGACGACACGGAGA 653
consensus_2744#1 GGTACCTCAACTGGTGGATCATGATGGACGACAGGGTCACGCCCAGAATCGCCA-GAACG 398
* *** ***** * *** *** * **** ** ** * *
consensus_2744#0 GCGAGTGTCAGCAGATCAGCTACAGGATGACCTTGATGTCAGAGTCCATCTACAGCAAGC 713
consensus_2744#1 GCCAGAG-----AGAAGGATCACAGCGGAGCATTGATGCCAGCAACCAGCAGGGCGAAGT 453
** ** * *** **** * ****** *** *** * ***
consensus_2744#0 CCTGCTTCCCCATCATTGTCTACTTCGTCCTGCTGGTTGCTGACATCATGCTCGCTGTGA 773
consensus_2744#1 A----------------------------------------------------------- 454
consensus_2744#0 TCTTCTCTCTGGCCGTTCTGGCGATTCTGGGCGTGACCCTGTCGTCCATC 823
consensus_2744#1 --------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |