These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2744#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 823 fasta sequence [ATCTCCGCCCCGCCTCCGTCCCCCGGGCTCCCCTGTCACATAAAAGCAACTCACCGCACTTCGTCTTTGATCTCGGCTCTGTTGTCGGGCTCTGTGTCTCGTCTCGTGAGCAGTTTTGATCTTTTGTCCCGTTTCTCCTCGCGCGTGCACCATG-GCTCAGATCAACGCGTGC-CTCAAACGTGTCTTCATCGTCTTTAACATCTTCTTCGCGGTGGTGGGGGCGGTCATCCTGGGGCTCACGCTGCTGTCCCAGGTGGTCATCAGCAGCCATGGGGGAGACCAGGTCGCAGGCCGCACTGCCGGCCTCATCATCCTTTACATCATGGGCAGCGTTACCATGGTGATCGCCATCCTGGGAGCCTATGGGGCGCACAAAGAGAACCGAGTGTGTCTGATTGTGTTCC-TGGTGTGTATGGTGATTGGGAGTCTGATCACACTCCGTACTGGGATCCCTGCTGTCATCGCCCGCTCACAGATTGAGGGCCTGTTGCGTGAGAAGTTCAGCGAGCTGGTGCCTCTGGACAAAGCCCCGTCAGATGTGAGGGTCATGGCTGATGAGCTGCAGAAGGAGCTCCACTGCTGTGGCCTGTTCAGTTACAAGGACTGGGAGGGAGAGATCCCAGACTCCTGTCTGTGCAGAGACGACACGGAGAGCGAGTGTCAGCAGATCAGCTACAGGATGACCTTGATGTCAGAGTCCATCTACAGCAAGCCCTGCTTCCCCATCATTGTCTACTTCGTCCTGCTGGTTGCTGACATCATGCTCGCTGTGATCTTCTCTCTGGCCGTTCTGGCGATTCTGGGCGTGACCCTGTCGTCCATC] [+] EMBL CA591410 [ATCTCCGCCCCGCCTCCGTCCCCCGGGCTCCCCTGTCACATAAAAGCAACTCACCGCACTTCGTCTTTGATCTCGTCTCTGTTGTCGGGCTCTGTGTCTCGTCTCGTGAGCAGTTTTGATCTTTTGTCCCGTTTCTCCTCGCGCGTGCACCATG GCTCAGATCAACGCGTGC CTCAAACGTGTCTTCATCGTCTTTAACATCTTCTTCGCGGTGGTGGGGGCGGTCATCCTGGGGCTCACGCTGCTGTCCCAGGTGGTCATCAGCAGCCATGGGGGAGACCAGGTCGCAGGCCGCACTGCCGGCCTCATCATCCTTTACATCATGGGCAGCGTTACCATGGTGATCGCCATCCTGGGAGCCTATGGGGCGCACAAAGAGAACCGAGTGTGTCTGATTGTGTTCC TGGTGTGTATGGTGATTGGGAGTCTGATCACACTCCGTACTGGGATCCCTGCTGTCATCGCCCGCTCACAGATTGAGGGCCTGTTGCGTGAGAAGTTCAGCGAGCTGGTGCCTCTGGACAAAGCCCCGTCAGATGTGAGGGTCATGGCTGATGAGCTGCAGAAGGAGCTCCACTGCTGTGGGCTGTTCAGTTACAAGGACTGGGAGGGAGAGATCCCA ] [+] EMBL FR0062221 [ CGGCTCTTTTGTCGGGCTCTGTGTCTCGTCTCGGGAGCAGTTTTGATCTTTTGTCCCGTCTCTCCTCGCGCGTGCACCATG GCTCAGATCAACGCGTGC CTCAAACGTGTCTTCATCGTCTTTAACATCTTCTTCGCGGTGGNGGGGGCGGTCATCCTGGGGCTCACGCTGCTGTCCCAGGTGGTCATCAGCAGCCATGGGGGAGACCAGGTCGCAGGCCGCACTGCCGGCCTCATCATCCTTTACATCATGGGCAGCGGTACCATGGTGATCGCCATCCTGGGAGCCTATGGGGCGCACAAAGAGAACCGAGTGTG ] [+] EMBL CA846203 [ cTCTGTATCTGTGTCTCGTCTCGTGAGCAGTTTTGATCTTTTCTCTCGATTCTCCTCGCGCGTGCACCATG GCTCAGATCAACGCGTGC CTCAAACGTGTCTTCATCGTCTTTAACATCTTCTTCGCGGTGGTGGGGGCGGTCATCCTGGGGCTCACGCTGCTGTCCCAGGTGGTCATCAGCAGCCATGGGGGAGACCAGGTCGCAGGCCGCACTGCCGGCCTCATCATCCTTTACATCATGGGCAGCGTTACCATGGTGATCGCCATCCTGGGAGCCTATGGGGCGCACAAAGAGAACCGAGTGTGTCTGATTGTGTTCC TGGTGTGTATGGTGATAGGGAGTCTGATCACACTCCGTACTGGGATCCCTGCTGTCATCGCCCGCTCACAGATTGAGGGCCTGTTGCGTGAGAAGTTCAGCGAGCTGGTGCCTCTGGACAAAGCCCCGTCAGATGTGAGGGTCAT ] [+] EMBL CA847012 [ aTTTGATCTTTTGTCCCGTTTCTCCTCGCGCGTCTACCATGAGCTCAGATCAACGCGTGC CTCAAACGTGTCTTCATCGTCTTTAACATCTTCTTCGCGGTGGTGGGGGCGGTCATCCTGGGGCTCACGCTGCTGTCCCAGGTGGTCATCAGCAGCCATGGGGGAGACCAGGTCGCAGGCCGCACTGCCGGCCTCATCATCCTTTACATCATGGGCAGCGTTACCATGGTGATCGCCATCCTGGGAGCCTATGGGGCGCACAAAGAGAACCGAGTGTGTCTGATTGTGTTCC TGGTGTGTATGGTGATTGGGAGTCTGATCACACTCCGTACTGGGATCCCTGCTGTCATCGCCCGCTCACAGATTGAGGGCCTGTTGCGTGAGAAGTTCAGCGAGCTGGTGCCTCTGGACAAAGCCCCGTCAGATGTGAGGGTCATGGC ] [+] EMBL FR0062410 [ TTGTCCCGTTTCTCCTCGCGCGTGCACCATG GCTCAGATCAACGCGTGC CTCAAACGTGTCTTCATCGTCTTTAACATCTTCTTCGCGGNGGTGGGGGCGGTCATCCTGGGGCTCACGCTGCTGTCCCAGGTGGTCATCAGCAGCCATGGGGGAGACCAGGTCGCAGGCCGCACTGCCGGCCTCATCATCCTTTACATCATGGGCAGCGTTACCATGGTGATCGCCATCCTGGGAGCCTATGGGGCGCACAAAGAGAACCGAGTGTGCCTGATTGTGTTCCTTGGTGTGTATGG ] [+] EMBL FR0062666 [ GCCCCGTTTCTCCTCGCGCGGGCACCATG GCTCAGAGCAACGCGTGC CTCAAACGTGTCTTCATCGTCTTTGACATCTTCTTCGCGGNGGAGGGGGC GACATCCTGGGGCTCACGCTGCTGTCCCAGGTGGTCATCAGCAGCCATGGGGGAGACCAGGTCGCAGGCCGCACTGCCGGCCTCATCATCCTTTACATCATGGGCAGCGTTACCATGGGGAGCGCCATCCTGGGAGCCTATGGGGCGCACAAAGAGACCCGAGCGCGT ] [+] EMBL CA330774 [ CTCCTCGCGCGTGCTCCATG GCTCAGATCAACGCGTGC CTCAAACGTGTCTTCATCGTCTTTAACATCTTCTTCGCGGTGGTGGGGGCGGTCATCCTGGGGCTCACGCTGCTGTCCCAGGTGGTCATCAGCAGCCATGGGGGAGACCAGGTCGCAGGCCGCACTGCCGGCCTCATCATCCTTTACATCATGGGCAGCGTTACCATGGTGATCGCCATCCTGGGAGCCTATGGGGCGCACAAAGAGAACCGAGTGTGTCTGATTGTGTTCC TGGTGTGTATGGTGATTGGGAGTCTGATCACACTCCGTACTGGGATCCCTGCTGTCATCGCCCGCTCACAGATTGAGGGCCTGTTGCGTGAGAAGTTCAGCGAGCTGGTGCCTCTGGACAAAGCCCCGTCAGATGTGAGGGTCATGGC ] [+] EMBL FR0062990 [ ATG GCTCAGATCAACGCGTGCGGGGGAACGTGTCTTCAGCGGCTTTAACATCTTCTTCGCGGTGGTGGGGGCGCTCATCCTGGGGCTCACGCTGCTGTCCCAGGTGGTCATCAGCAGCCATGGGGGAGACCAGGTCGCAGGCCGCACTGCCGGCCTCATCATCCTTTACATCATGGGCAGCGGTACCATGGTGATCGCCATCCTGGGAGCCTATGGGGCGCACAAAGAGAACCGAGGGTGGCTGATTGg ] [+] EMBL FR0062297 [ gAGATCAACGCGTGC CTCAAACGTGTCTTCATCGGCTTTAACATCTTCTTCGCGGTGGTGGGGGCGGTCATCCTGGGCCTCACGCTGCTGTCCCAGGTGGTCATCAGCAGCCATGGGGGAGACCAGGGCGCAGGCCGCACTGCCGGCCTCATCATCCTTTACATCATGGGCAGCGTTACCATGGTGAGCGCCATCCTGGGAGCCTATGGGGCGCCCAAAGAGAACCGAGTGTGTCTGATTGTGTTCC TGGTGTGAATGGGGATTGGGAGTCTGACCACACTCCG ] [+] EMBL CA845212 [ ACATCATGGGCAGCGTTACCATGGTGATCGCCATCCTGGGAGCCTATGGGGCGCACAAAGAGAACCGAGTGTGTCTGATTGTGTTCC TGGTGTGTATGGTGATTGGGAGTCTGATCACACTCCGTACTGGGATCCCTGCTGTCATCGCCCGCTCACAGATTGAGGGCCTGTTGCGTGAGAAGTTCAGCGAGCTGGTGCCTCTGGACAAAGCCCCGTCAGATGTGAGGGTCATGGCTGATGAGCTGCAGAAGGAGCTCCACTGCTGTGGCCTGTTCAGTTACAAGGACTGGGAGGGAGAGATCCCAGACTCCTGTCTGTGCAGAGACGACACGGAGAGCGAGTGTCAGCAGATCAGCTACAGGATGACCTTGATGTCAGAGTCCATCTACAGCAAGCCCTGCTTCCCCATCATTGTCTACTTCGTCCTGCTGGTTGC ] [+] EMBL CA845154 [ TCCTGGGAGCCTATGGGGCGCACAAAGAGAACCGAGTGTGTCTGATTGTGTTCC TGGTGTGTATGGTGATTGGGAGTCTGATCACACTCCGTACTGGGATCCCTGCTGTCATCGCCCGCTCACAGATTGAGGGCCTGTTGCGTGAGAAGTTCAGCGAGCTGGTGCCTCTGGACAAAGCCCCGTCAGATGTGAGGGTCATGGCTGATGAGCTGCAGAAGGAGCTCCACTGCTGTGGCCTGTTCAGTTACAAGGACTGGGAGGGAGAGATCCCAGACTCCTGTCTGTGCAGAGACGACACGGAGAGCGAGTGTCAGCAGATCAGCTACAGGATGACCTTGATGTCAGAGTCCATCTACAGCAAGCCCTGCTTCCCCATCATTGTCTACTTCGTCCTGCTGGTTGCTGACATCATGCTCGCTGTGATCTTCTCTCTGGCCGTTCTGGCGATTCTGGGCGTGACCCTGTCGTCCATC] consensusID : consensus_2744#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 454 fasta sequence [TTTCAGTTTTAGTTGTTTTTTTAATTAAATCTTTGGAGTTACAGTAACAAGAAAAAGGTGAAAAAGAG-TTCCCTCATCTAAATATTCCGAGCCCACACTGCTGATCGTCGAGG--TTCCGGAACAGAAAACATCACAATAGAAAAACATCTGATTATGGCCAAAGCAGCACAAACAAGTCTTTAGACCTCCAAGCCGAGGCGTTAGAACCACCCAGAGCCACCAGAACCCCCAGGCTCCTCCAGGAGCGCTAGTACAGGGGAGCAGACTGCAGCTCCTGGTACTTGGGCGGGGCCGTGGTGAAGATGGCCGGCACCGTCAGGACGGCGTGGGCTCGGGCCGGGTACCTCAACTGGTGGATCATGATGGACGACAGGGTCACGCCCAGAATCGCCAGAACGGCCAGAGAGAAGGATCACAGCGGAGCATTGATGCCAGCAACCAGCAGGGCGAAGTA] [-] EMBL CA330172 [TTTCAGTTTTAGTTGTTTTTTTAATTAAATCTTTGGAGTTACAGTAACAAGAAAAAGGTGAAAAAGAG TTCCCTCATCTAAATATTCCGAGCCCACACTGCTGATCGTCGAGGATATCCGGAACAGAAAA ] [-] EMBL CA847105 [ TTTAGTTGTTTTTTTAATTAAATCTTTGGAGTTACAGTAACAAGAAAAAGGTGAAAAAGAG TTCCCTCATCTAAATATTCCGAGCCCACACTGCTGATCGTCGAGG TTCCGGAACAGAAAACATCACAATAGAAAAACATCTGATTATGGCCAAAGCAGCACAAACAAGTCTAAAGACCTCCAAGCCGAGGCGTTAGAACCACCCAGtt ] [+] EMBL CA332647 [ TTAGTTGTTTTTTTAATTAAATCTTTGGAGTTACAGTAACAAGAAAAAGGTGAAAAAGAG TTCCCTCATCTAAATATTCCGAGCCCACACTGCTGATCGTCGAGG TTCCGGAACAGAAAACATCACAATAGAAAAACATCTGATTATGGCCAAAGCAGCACAAACAAGTCTTTAGACCTCCAAGCCGAGGCGTTAGAACCACCCAGAACCACCAGAACCCTCCGGCTCCTCCAGGAGCGCTAGTACAGGGGAGCAGACTGCAGCTCCTGGTACTTGGGCGGGGCCGTGGTGAAGATGGCCGGCACCGTCAGGACGGCGTGGGCTCGGGCCGGGTACCTCATCTGGTGGATCATGATGGACGACAGGGTCACGCCCAGAATCGCCAGAACGGCCAGAGAGAA GATCACAGC GAGCA TGATGTCAGCAACCAGCAGGACG ] [-] EMBL CA845735 [ TGTTTTTTTAATTAAATCTTTGGAGTTACAGTAACAAGAAAAAGGTGAAAATGAGATGGCCTCATCTAAA ] [-] EMBL FR0055595 [ G TTCCCTCATCTAAATATCCCGAGCCCACACTGCTGATCGTCGAGG TCCCGGAACAGAAAACATCACAATAGAAAAACATCTGATTATGCCCAAAGCAGCACAAGCAAGTCCTTAGACCTCCAACCCGAGGCGTTAGAACCACCCAGAGCCACCAGAACCTCCAGGCTCCTCCAGGAGCGCTAGTACAGGGGAGCAGACTGCAGCTCCTGGTACTTGGGCGGGGCCGTGGTGAAGATGTCCGGCACCGTCAGGACGGCGTGGGCTCGGACCGGGTACCTCAACTGGTGGATCATGATGGACGACAGGGTCACGCCCAGAATCCCCAGAACGGCCAGAGAGAAGGATCACAGCGGAGCATTGATGCCAGCAACCAGCAGGGCGAAGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2744#0 ATCTCCGCCCCGCCTCCGTCCCCCGGGCTCCCCTGTCACATAAAAGCAACTCACCGCACT 60 consensus_2744#1 ------------------------------------------------------------ consensus_2744#0 TCGTCTTTGATCTCGGCTCTGTTGTCGGGCTCTGTGTCTCGTCTCGTGAGCAGTTTTGAT 120 consensus_2744#1 ------------------------------------------------------------ consensus_2744#0 CTTTTGTCCCGTTTCTCCTCGCGCGTGCACCATGGCTCAGATCAACGCGTGCCTCAAACG 180 consensus_2744#1 ------------------------------------------------------------ consensus_2744#0 TGTCTTCATCGTCTTTAACATCTTCTTCGCGGTGGTGGGGGCGGTCATCCTGGGGCTCAC 240 consensus_2744#1 -------------------------------------------------TTTCAGTTTTA 11 * * * consensus_2744#0 GCTGCTGTCCCAGGTGGTCATCAGCAGCCATGGGGGAGACCAGGTCGCAGGCCGCACTGC 300 consensus_2744#1 GTTGTTTTTTTAATTAAATCTTTGGAGTTACAGTAA----CAAGAAAAAGGTGAAAAAG- 66 * ** * * * * * * ** * * ** * *** * * consensus_2744#0 CGGCCTCATCATCCTTTACATCATGGGCA-GCGTTACCATGGTGATCGCCATCCTGGGAG 359 consensus_2744#1 -AGTTCCCTCATC-TAAATATTCCGAGCCCACACTGC--TGATCGTCGAGGTTCCGGAAC 122 * * ***** * * ** * ** * * * ** * *** * * ** * consensus_2744#0 CCTATGGGGCGCACAAAGAGAACCGAGTGTGTCTGATTGTGTTCCTGGT-GTGTATGGTG 418 consensus_2744#1 AGAAAACATCACAATAGAAAAAC-------ATCTGATTATGGCCAAAGCAGCACAAACAA 175 * * ** * * *** ******* ** * * * * consensus_2744#0 ATTGGGAGTCTGATCACACTCCGTACTGGGATCCCT----GCTGTCATCGCCCGCTCACA 474 consensus_2744#1 GTCTTTAGACCTCCAAGCCGAGGCGTTAGAACCACCCAGAGCCACCAGAACCCCCAGGCT 235 * ** * * * * * * * * * ** ** *** * * consensus_2744#0 GATTGAGGGCCTGTTGCGTGAGAAGTTCAGCGAGCTGGTGCCTCTGG-ACAAAGCCCCGT 533 consensus_2744#1 CCTCCAGGAGCGCTAGTACAGGGG----AGCAGACTGCAGCTCCTGGTACTTGGGCGGGG 291 * *** * * * * *** *** ** **** ** * * * consensus_2744#0 CAGATGTGAGGGTCATGGCTGATGAGCTGCAGAAGGAGCTCCACTGCTGTGGCCTGTTCA 593 consensus_2744#1 CCGTGGTGAAG---ATGGCCGGCACCGTCAGGACGGCG---------TGGGCTCGGGCCG 339 * * **** * ***** * * ** ** * ** * * * * consensus_2744#0 GTTACAAGGACTGGGAGGGAGAGATCCCAGACTCCTGTCTGTGCAGAGACGACACGGAGA 653 consensus_2744#1 GGTACCTCAACTGGTGGATCATGATGGACGACAGGGTCACGCCCAGAATCGCCA-GAACG 398 * *** ***** * *** *** * **** ** ** * * consensus_2744#0 GCGAGTGTCAGCAGATCAGCTACAGGATGACCTTGATGTCAGAGTCCATCTACAGCAAGC 713 consensus_2744#1 GCCAGAG-----AGAAGGATCACAGCGGAGCATTGATGCCAGCAACCAGCAGGGCGAAGT 453 ** ** * *** **** * ****** *** *** * *** consensus_2744#0 CCTGCTTCCCCATCATTGTCTACTTCGTCCTGCTGGTTGCTGACATCATGCTCGCTGTGA 773 consensus_2744#1 A----------------------------------------------------------- 454 consensus_2744#0 TCTTCTCTCTGGCCGTTCTGGCGATTCTGGGCGTGACCCTGTCGTCCATC 823 consensus_2744#1 -------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |