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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2748#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 865 fasta sequence
[CGCGGCGGGTCACGTGACCCCAGTCTCAGCAATAAGAAGCAGGAAACCAAACCCTGCCGCAGTTGGAGCAGCAGCGATGAGCGCGACGATCGGAGGCCTGATGTTGGGAGCCTTGCTGCTGTGCGTCGGCGCGGCGGCCGCGTTTGACAGCACTCTGGAC-GTCCACTGGGAACTGTGGAAGAGGACACACAGCAGGACGTACGAGTCGGAGGTGGAGGAGGGAAGCCGCAGGGAAGTGTGGGAGAAGAACCTGAGGCTGATTAACATGCACAACCTGGAGGCCTCGATGGGACTCCACACCTACGAGCTGGGCATGAACC-ACATGGGGGACCTGCATGCAGAGGAGATCCTGCCGACCCTGACCACGCTCACCCCCCCCTCCGAGCGCCAGAGGGGGCAGTCTATCTTCGTCACCTCGGAAGGAGCCGATC-TGCCACAGACGGTGGACTGGAGGGACAAAGGCTTGGTCACCAGCGTGAAGAAACAGGGCTCCTGTGGCTCCTGCTGGGCCTTCAGCGCCGCGGGGGCCCTGGAGGGGCAGCTGGCCAAGACCACGGGGAGGCTGGTCGACCTGAGCCCCCAGAACCTGGTGGACTGCTCGGGCAAATACGGCAACCACGGCTGCAACGGCGGCTACATGCACAGAGCCTTCCAGTACGTCATCGACAACCAGGGCATCGACTCGGAGGCGTCGTATCCCTACAGAGGAAAGGTGCAGCAGTGCCTCTATAACCCAGCGTTCCGCGCCGCCAACTGCTCCCAGTACCGGTTCCTGACTCAGGGGGACGAAGGGAACCTGCAGGCAGCGGNCGCCTCCATCGGACCCATCTCGGTCGCAATCGATGCCAAGCAGCCCAAATTTTAC]
[+] EMBL BU808437 [CGCGGCGGGTCACGTGACCCCAGTCTCAGCAATAAGAAGCAGGAAACCAAACCCTGCCGCAGTTGGAGCAGCAGCGATGAGCGCGACGATCGGAGGCCTGATGTTGGGAGCCATGCTGCTGTGCGTCGGCGCGGCGGCCGCGTTTGACAGCACTCTGGAC GTCCACTGGGAACTGTGGAAGAGGACACACAGCAGGACGTACGAGTCGGAGGTGGAGGAGGGAAGCCGCAGGGAAGTGTGGGAGAAGAACCTGAGGCTGATTAACATGCACAACCTGGAGGCCTCGATGGGACTCCACACCTACGAGCTGGGCATGAACC ACATGGGGGACCTGCATGCAGAGGAGATCCTGCCGACCCTGACCACGCTCACCCCCCCCTCCGAGCGCCAGAGGGGGCAGTCTATCTTCGTCACCTCGGAAGGAGCCGATC TGCCACAGACGGTGGACTGGAGGGACAAAGGCTTGGTCACCAGCGTGAAGAAACAGGGCTCCTGTGGCTCCTGCTGGGCCTTCAGCG ]
[+] EMBL BU806437 [ CCAAACCCTGCCGCAGTTGGAGCAGCAGCGATGAGCGCGACGATCGGAGGCCTGATGTTGGGAGCCTTGCTGCTGTGCGTCGGCGCGGCGGCCGCGTTTGACAGCACTCTGGAC GTCCACTGGGAACTGTGGAAGAGGACACACAGCAGGACGTACGAGTCGGAGGTGGAGGAGGGAAGCCGCAGGGAAGTGTGGGAGAAGAACCTGAGGCTGATTAACATGCACAACCTGGAGGCCTCGATGGGACTCCACACCTACGAGCTGGGCATGAACC ACATGGGGGACCTGCATGCAGAGGAGATCCTGCCGACCCTGACCACGCTCACCCCCCCCTCCGAGCGCCAGAGGGGGCAGTCTATCTTCGTCACCTCGGAAGGAGCCGATC TGCCACAGACGGTGGACTGGAGGGACAAAGGCTTGGTCACCAGCGTGAAGAAACAGGGCTCCTGTGGCTCCTGCTGGGCCTTCAGCGCCGCGGGGGCCCTGGAGGGGCAGCTGGCCAAGACCACGGGGAGGCTGGTCGACCTGAGCCCCCAGAACCTGGTGGACTGCTCGGGCAAATACGGCAACCACGGCTGCAACGGCGGCTACATGCACAGAGCCTTCCAGTACGTC ]
[+] EMBL BU806395 [ AGCGCGACGATCGGAGGCCTGATGTTGGGAGACTTGCTGCTGTGCGTCGGCGCGGAGGACGCGTTTGACAGAACTCTGGAC GTCCACTGGGAACTGTGGAAGAGGACACACAGCAGGACGTACGAGTCGGAGGTGGAGGAGGGAAGCCGCATGGAAGTGTGGGAGAAGAACGTGAGGCTGATTAACATGAACAACCTGTAGGCCTCGATGGGACTCCACACCTACAAACTGGGCATGAACC AAATGGAGGACCTGCATGCAAAGGAGATGATGACGACCCTGACCACGCTCACCCCCCCCTCCGAGAGACAAAGGGGGAAGACTATCTTCAACGACTCAGAAGGAGCCGATCATGCCACAAACGGAGGACTGAAGGAACAAAGGCTTGGACACCAACGAGAAG AACAGGGATCCTGTGGCTCCTGATGAGACTTCAACGACACGGGGGCCCTGGAGGGGCAAATGGACAAa ]
[+] EMBL FR0063111 [ AGCGCGACGATCGGAGTTCTGATGTTGGGAGCCTTGCTGGGGTGCGTCGGCGCCGGCGCCGCTTTTGACAGCACTCTGGAC GTCCACTGGGAACTGTGGAAGAGGACACACAGCAGGACGTACGAGTCGGAGGTGGAGGAGGGAAGCCGCAGGGAAGTGTGGGAGAAGAACCTGAGGCTGATTAACATGCACAACCTGGAGGCCTCGATGGGACTCCACACCTACGAGCTGGGCATGAACC ACATGGGGGACCTGCATGCAGAGGAGATCCTGCCGACCCTGACCACGCTCACCCCCCCCTCCGAGCGCCAGAGGGGGCAGTCTATCTTCGTCACCTCGGAAGGAGCCGATC TGCCACAGACGGTGGACTGGAGGGACATAGGCTTGGGCACCAGCGTGAAGAAACAG ]
[+] EMBL CA590903 [ ATCGGAGGCCTGATGTTGGGAGCCTTGCTGCTGTGCGTCGGCGCGGCGGCCGCGTTTGACAGCACTCTGGAC GTCCACTGGGAACTGTGGAAGAGGACACACAGCAGGACGTACGAGTCGGAGGTGGAGGAGGGAAGCCGCAGGGAAGTGTGGGAGAAGAACCTGAGGCTGATTAACATGCACAACCTGGAGGCCTCGATGGGACTCCACACCTACGAGCTGGGCATGAACC ACATGGGGGACCTGCATGCAGAGGAGATCCTGCCGACCCTGACCACGCTCACCCCCCCCTCCGAGCGCCAGAGGGGGCAGTCTATCTTCGTCACCTCGGAAGGAGCCGATC TGCCACAGACGGTGGACTGGAGGGACAAAGGCTTGGTCACCAGCGTGAAGAAACAGGGCTCCTGTGGCTCCTGCTGGGCCTTCAGCGCCGCGGGGGCCCTGGAGGGGCAGCTGGCCAAGACCACGGGGAGGCTGGTCGACCTGAGCCCCCAGAACCTGGTGGACTGCTCGGGCAAATACGGCAACCACGGCTGCAACGGCGGCTACATGCACAGAGCCTTCCAGTACGTCATCGACAACCAGGGCATCGACTCGGAGGCGTCG ]
[+] EMBL CA589291 [ ATCGGAGGCCTGATGTTGGGAGCCATGCTGCTGTGCGTCGGCGCGGCGGCCGCGTTTGACAGCACTCTGGAC GTCCACTGGGAACTGTGGAAGAGGACACACAGCAGGACGTACGAGTCGGAGGTGGAGGAGGGAAGCCGCAGGGAAGTGTGGGAGAAGAACCTGAGGCTGATTAACATGCACAACCTGGAGGCCTCGATGGGACTCCACACCTACGAGCTGGGCATGAACCTTTATGGGGGACCTGCATGCAGAGGAGATCCTGCCGACCCTGACCACGCTCACCCCCCCCTCCGAGCGCCAGAGGGGGCAGTCTATCTTCGTCACCTCGGAAGGAGCCGATC TGCCACAGACGGTGGACTGGAGGGACAAAGGCTTGGTCACCAGCGTGAAGAAACAGGGCTCCTGTGGCTCCTGCTGGGCCTTCAGCGCCGCGGGGGCCCTGGAGGGGCAGCTGGCCAAGACCACGGGGAGGCTGGTCGACCTGAGCCCCCAGAACCTGGTGGACTGCTCAGGCAAATACGGCAACCACGGCTGCAACGGCGGCTACATGGACAGAGCCTTCCAGTACATCATCGAC ]
[+] EMBL CA588195 [ TCGGAGGCCTGATGTTGGGAGCCATGCTGCTGTGCGTCGGCGCGGCGGCCGCGTTTGACAGCACTCTGGAC GTCCACTGGGAACTGTGGAAGAGGACACACAGCAGGACGTACGAGTCGGAGGTGGAGGAGGGAAGCCGCAGGGAAGTGTGGGAGAAGAACCTGAGGCTGATTAACATGCACAACCTGGAGGCCTCGATGGGACTCCACACCTACGAGCTGGGCATGAACC ACATGGGGGACCTGCATGCAGAGGAGATCCTGCCGACCCTGACCACGCTCACCCCCCCCTCCGAGCGCCAGAGGGGGCAGTCTATCTTCGTCACCTCGGAAGGAGCCGATC TGCCACAGACGGTGGACTGGAGGGACAAAGGCTTGGTCACCAGCGTGAAGAAACAGGGCTCCTGTGGCTCCTGCTGGGCCTTCAGCGCCGCGGGGGCCCTGGAGGGGCAGCTGGCCAAGACCACGGGGAGGCTGGTCGACCTGAGCCCCCAGAACCTGGTGGACTGCTCAGGCAAATACGGCAACCACGGCTGCAACGGCGGCTACATGGACAGAGCCTTCCAGTACATCATCGACAACCAGGGCATCGACTCGGAGGCATCGTATCCCTACAGAGGAAAGGTGCAGCAGTGCCTCTATAACCCAGCGTTCCGCGCCGCCAACTGCTCCCAGTACCGGTTCCTGACTCAGGGGGACGAAGGGAACCTGCAGGCAGCGGNCGCCTCCATCGGACCCATCTCGGTCGCAATCGATGCCAAGCAGCCCAAATTTTAC]
[+] EMBL FR0061194 [ CTTGCTGCTGTGCGTCGGCGCGGCGGCCGCGTTTGACAGCACTCTGGACGGGCGAGTGGGAACTGTGGAAGAGGACACACAGCAGGACGTACGAGTCGGAGGTGGAGGAGGGAAGCCGCAGGGAAGTGTGGGAGAAGAACCTGAGGCTGATTAACATGCACAACCTGGAGGCCTCGATGGGACTCCACACCTACGAGCTGGGCATGAACC ACATGGGGGACCTGCATGCAGAGGAGATCCTGCCGACCCTGACCACGCTCACCCCCCCCTCCGAGCGCCAGAGGGGGCAGTCTATCTTCGTCACCTCGGAAGGAGCCGATC TGCCACAGACGGTGGAC ]
[+] EMBL FR0059997 [ CATGCTGCTGCGCGTCGGCGCGGCGGCCGCGTTTGACAGCACTCTGGAC GGCCGCTGGGAACTGTGGAAGAGGACACACAGCANGACGTACGAGTCGGAGGTGGAGGAGGGAAGCCGCAGGGAAGTGTGGGAGAAGAACCTGAGGCTGATTAACATGCACAACCTGGAGGCCTCGATGGGACTCCACACCTACGAGCTGGGCATGAACC ACATGGGGGACCTGCATGCAGAGGAGATCCTGCCGACCCTGACCACGCTCACCCCCCCTTC ]
[+] EMBL FR0061108 [ GCTGTGCGTCGGCGCGGCGGCCGCGTTTGACAGCACTCTGGAC GTCCACTGGGAACTGTGGAAGAGGACACACAGCAGGACGTACGAGTCGGAGGTGGAGGAGGGAAGCCGCAGGGAAGTGTGGGAGAAGAACCTGAGGCTGATTAACATGCACAACCTGGAGGCCTCGATGGGACTCCACACCTACGAGCTGGGCATGAACC ACATGGGGGACCTGCATGCAGAGGAGATCCTGCCGACCCTGACCACGCTTACCCCCCCCTTCG ]
[+] EMBL FR0059244 [ tGGCCGCGTTTGACAGCACTCTGGAC GTGCACTGGGAACTGTGGAAGAGGACACACACCAGGACGTACGAGTCGGAGGTGGAGGAGGGAAGCCGCAGGGAAGTGTGGGAGAAGAACCTGAGGCTGATTAACATGCACAACCTGGAGGCCTCGATGGGACTCCACACCTACGAGCTGGGCATGAACC ACATGGGGGACCTGCATGCAGAGGAGATCCTGCCGACCCTGACCACGCTCACCCCt ]
[+] EMBL BU807167 [ CCGCGTTTGACAGCACTCTGGAC GTCCACTGGGAACTGTGGAAGAGGACACACAGCAGGACGTACGAGTCGGAGGTGGAGGAGGGAAGCCGCAGGGAAGTGTGGGAGAAGAACCTGAGGCTGATTAACATGCACAACCTGGAGGCCTCGATGGGACTCCACACCTACGAGCTGGGCATGAACC ACATGGGGGACCTGCATGCAGAGGAGATCCTGCCGACCCTGACCACGCTCACCCCCCCCTCCGAGCGCCAGAGGGGGCAGTCTATCTTCGTCACCTCGGAAGGAGCCGATC TGCCACAGACGGTGGACTGGAGGGACAAAGGCTTGGTCACCAGCGTGAAGAAACAGGGCTCCTGTGGCTCCTGCTGGGCCTTCAGCGCCGCGGGGGCCCTG ]
[+] EMBL CA591214 [ CCGCGTTTGACAGCACTCTGGAC GTCCACTGGGAACTGTGGAAGAGGACACACAGCAGGACGTACGAGTCGGAGGTGGAGGAGGGAAGCCGCAGGGAAGTGTGGGAGAAGAACCTGAGGCTGATTAACATGCACAACCTGGAGGCCTCGATGGGACTCCACACCTACGAGCTGGGCATGAACC ACATGGGGGACCTGCATGCAGAGGAGATCCTGCCGACCCTGACCACGCTCACCCCCCCCTCCGAGCGCCAGAGGGGGCAGTCTATCTTCGTCACCTCGGAAGGAGCCGATC TGCCACAGACGGTGGACTGGAGGGACAAAGGCTTGGTCACCAGCGTGAAGAAACAGGGCTCCTGTGGCTCCTGCTGGGCCTTCAGCGCCGCGGGGGCCCTGGAGGGGCAGCTGGCCAAGACCACGGGGAGGCTGGTCGACCTGAGCCCCCAGAACCTGGTGGACTGCTCGGGCAAATACGGCAACCACGGCTGCAACGGCGGCTACATGCACAGAGCCTTCCAGTACGTCATCGACAACCAGGGCATCGACTCGGAGGCGTCGTATCCCT ]
[+] EMBL FR0061645 [ GCGTTTGACAGCACTCTGGAC GTCCACTGGGAACTGTGGAAGAGGACACACAGCAGGACGTACGAGTCGGAGGTGGAGGAGGGAAGCCGCAGGGAAGTGTGGGAGAAGAACCTGAGGCTGATTAACATGCACAACCTGGAGGCCTCGATGGGACTCCACACCTACGAGCTGGGCATGAACC ACATGGGGGACCTGCATGCAGAGGAGATCCTGCCGACCCTGACCACGCTCACCCCCCCCTCCGAGCGCCAGAGGGGGCAGTCTATCTTCGTCACCTTGGAAGGAGCCGATC TGCCACAGACGGGGGACTGGGGGac ]
[+] EMBL FR0059446 [ gAGCACTCTGGAC GTCCACTGGGAACTGTGGAGGAGGACACACAGCAGGACGTACGAGTCGGAGGTGGAGTAGGGAAGCCGCAGGGAAGTGTGGGAGAAGAACCTGAGGCTGATTAACATGCACAACCTGGAGGCCTCGATGGGACTCCACACCTACGAGCTGGGCATGAACC ACATGGGGGACCTGCATGCAGTGGAGATCCTGCCGACCCTGACCACGCTCACCCCCCCCctt ]
consensusID : consensus_2748#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence
[ATTACGCGACGATCGGAGGCCTGATGTTGGGAGCATGCCGTGAGCGTCGGCGCGGCGGCCGCGTTTGACAGCACTCTGGACGTCCACTGGGAACTGTGGAAGAGGACACACAGCAGGACGTACGAGTCGGAGGTACGGCGTTGAAACAGGCCAAAATCCATATGCACGATGACCTCGTGACCTCTGTGTTCTGTCTGGAGGTGGAGGAGGGAAGCCGCAGGGAAGTGTGGGAGAAGAACCTGAGGCTGATTAACATGCACAACCTGGAGGCCTCGATGGGACTCCACACCTACGAGCTGGGCATGAACCACATGGGGGACCTGCATGCAGAGGAGATCCTGCCGACCCTGACCACGCTCACCCCCCCCTCCGAGCGCCAGAGGGGGCAGTCTATCTTCGTCACCTCGGAAGGAGCCGATCTGCCACAGACGGTGGACTGGAGGGACAAAGGCTTGGTCACCAGCGTGAAGAAACAGGGCTCCTGTGGCTCCTGCTGGGCCTTCAGCGCCGCGGGGGCCCTGGAGGGGCAGCTGGCCAAGACCACGGGGAGGCTGGTCGACCTGAGCCCCCAGAACCTGGTGGACT]
[+] EMBL CA588410 [ATTACGCGACGATCGGAGGCCTGATGTTGGGAGCATGCCGTGAGCGTCGGCGCGGCGGCCGCGTTTGACAGCACTCTGGACGTCCACTGGGAACTGTGGAAGAGGACACACAGCAGGACGTACGAGTCGGAGGTACGGCGTTGAAACAGGCCAAAATCCATATGCACGATGACCTCGTGACCTCTGTGTTCTGTCTGGAGGTGGAGGAGGGAAGCCGCAGGGAAGTGTGGGAGAAGAACCTGAGGCTGATTAACATGCACAACCTGGAGGCCTCGATGGGACTCCACACCTACGAGCTGGGCATGAACCACATGGGGGACCTGCATGCAGAGGAGATCCTGCCGACCCTGACCACGCTCACCCCCCCCTCCGAGCGCCAGAGGGGGCAGTCTATCTTCGTCACCTCGGAAGGAGCCGATCTGCCACAGACGGTGGACTGGAGGGACAAAGGCTTGGTCACCAGCGTGAAGAAACAGGGCTCCTGTGGCTCCTGCTGGGCCTTCAGCGCCGCGGGGGCCCTGGAGGGGCAGCTGGCCAAGACCACGGGGAGGCTGGTCGACCTGAGCCCCCAGAACCTGGTGGACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2748#0 CGCGGCGGGTCACGTGACCCCAGTCTCAGCAATAAGAAGCAGGAAACCAAACCCTGCCGC 60
consensus_2748#1 ------------------------------------------------------------
consensus_2748#0 AGTTGGAGCAGCAGCGATGAGCGCGACGATCGGAGGCCTGATGTTGGGAGCCTTGCTGCT 120
consensus_2748#1 ----------------ATTA-CGCGACGATCGGAGGCCTGATGTTGGGAGCAT-GCCG-T 41
** * ****************************** * ** * *
consensus_2748#0 GTGCGTCGGCGCGGCGGCCGCGTTTGACAGCACTCTGGACGTCCACTGGGAACTGTGGAA 180
consensus_2748#1 GAGCGTCGGCGCGGCGGCCGCGTTTGACAGCACTCTGGACGTCCACTGGGAACTGTGGAA 101
* **********************************************************
consensus_2748#0 GAGGACACACAGCAGGACGTACGAGTCGGAGGT--------------------------- 213
consensus_2748#1 GAGGACACACAGCAGGACGTACGAGTCGGAGGTACGGCGTTGAAACAGGCCAAAATCCAT 161
*********************************
consensus_2748#0 -----------------------------------------GGAGGAGGGAAGCCGCAGG 232
consensus_2748#1 ATGCACGATGACCTCGTGACCTCTGTGTTCTGTCTGGAGGTGGAGGAGGGAAGCCGCAGG 221
*******************
consensus_2748#0 GAAGTGTGGGAGAAGAACCTGAGGCTGATTAACATGCACAACCTGGAGGCCTCGATGGGA 292
consensus_2748#1 GAAGTGTGGGAGAAGAACCTGAGGCTGATTAACATGCACAACCTGGAGGCCTCGATGGGA 281
************************************************************
consensus_2748#0 CTCCACACCTACGAGCTGGGCATGAACCACATGGGGGACCTGCATGCAGAGGAGATCCTG 352
consensus_2748#1 CTCCACACCTACGAGCTGGGCATGAACCACATGGGGGACCTGCATGCAGAGGAGATCCTG 341
************************************************************
consensus_2748#0 CCGACCCTGACCACGCTCACCCCCCCCTCCGAGCGCCAGAGGGGGCAGTCTATCTTCGTC 412
consensus_2748#1 CCGACCCTGACCACGCTCACCCCCCCCTCCGAGCGCCAGAGGGGGCAGTCTATCTTCGTC 401
************************************************************
consensus_2748#0 ACCTCGGAAGGAGCCGATCTGCCACAGACGGTGGACTGGAGGGACAAAGGCTTGGTCACC 472
consensus_2748#1 ACCTCGGAAGGAGCCGATCTGCCACAGACGGTGGACTGGAGGGACAAAGGCTTGGTCACC 461
************************************************************
consensus_2748#0 AGCGTGAAGAAACAGGGCTCCTGTGGCTCCTGCTGGGCCTTCAGCGCCGCGGGGGCCCTG 532
consensus_2748#1 AGCGTGAAGAAACAGGGCTCCTGTGGCTCCTGCTGGGCCTTCAGCGCCGCGGGGGCCCTG 521
************************************************************
consensus_2748#0 GAGGGGCAGCTGGCCAAGACCACGGGGAGGCTGGTCGACCTGAGCCCCCAGAACCTGGTG 592
consensus_2748#1 GAGGGGCAGCTGGCCAAGACCACGGGGAGGCTGGTCGACCTGAGCCCCCAGAACCTGGTG 581
************************************************************
consensus_2748#0 GACTGCTCGGGCAAATACGGCAACCACGGCTGCAACGGCGGCTACATGCACAGAGCCTTC 652
consensus_2748#1 GACT-------------------------------------------------------- 585
****
consensus_2748#0 CAGTACGTCATCGACAACCAGGGCATCGACTCGGAGGCGTCGTATCCCTACAGAGGAAAG 712
consensus_2748#1 ------------------------------------------------------------
consensus_2748#0 GTGCAGCAGTGCCTCTATAACCCAGCGTTCCGCGCCGCCAACTGCTCCCAGTACCGGTTC 772
consensus_2748#1 ------------------------------------------------------------
consensus_2748#0 CTGACTCAGGGGGACGAAGGGAACCTGCAGGCAGCGGNCGCCTCCATCGGACCCATCTCG 832
consensus_2748#1 ------------------------------------------------------------
consensus_2748#0 GTCGCAATCGATGCCAAGCAGCCCAAATTTTAC 865
consensus_2748#1 ---------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |