These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2749#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 658 fasta sequence [AGTGCAGTTGCGGATCACCACCAGGAATCGCCGACAAGCCGATAATCCTCCCTTTTAAGCGGGACGCAGCGAAAGGTCCCAGTATCCACGCACCATGGCAGACAGAGAAAACCTCGTGTACCAGGCTAAACTGGCCGAGCAGGCGGAAAGATATGACGAAATGGTGGAGTCGATGAAGAAGGTGGCGGGTTTGGACAAGGAGCTGACCATGGAAGAGAGGAACCTGCTGTCGGTTGCCTACAAGAACGTCATCGGAGCTCGACGAGCTTCTTGGAGGATAATTAGCA-GCCTGGAGCAGAAAGAAGAAGGCAAAGCTGCAGAGGAGAAGATGAAAATGATCAAGGAGTACAGGAAAGTGATTGAAAACGAGCTGAAAACGATCTGCAACGATATTCTGGTTGTACTGGACAAGCACCTGATCCCCACTGCATTAATGGGAGAATCCAAGGTTTTCTACTACAAGATGAAGGGAGATTACCACAGGTACCTGGCAGAGTTTGCTACAGGAAACGACAGGAAGGAGGCGGCGGAGAACAGTCTGATGGCGTACAAAGCTGCTAACGACATCGCCCAGAGCGAGCTCACTTCCACACACCCCATCCGTCTGGGATTGGCCCTCAACTTTTCAGTCTTCTACTACGAAATCCTAAACTCGGCG] [+] EMBL CA332871 [AGTGCAGTTGCGGATCACCACCAGGAATCGCCGACAAGCCGATAATCCTCCCTTTTAAGCGGGACGCAGCGAAAGGTCCCAGTATCCACGCACCATGGCAGACAGAGAAAACCTCGTGTACCAGGCTAAACTGGCCGAGCAGGCGGAAAGATATGACGAAATGGTGGAGTCGATGAAGAAGGTGGCGGGTTTGGACAAGGAGCTGACCATGGAAGAGAGGAACCTGCTGTCGGTTGCCTACAATATTGTCATCGGAGCTCGACGAGCTTCTTGGAGGATAATTAGCA GCCTGGAGCACAAAGAAGAAGGCAAAGCTGCAGAGGAGAAGATGAAAATGATCAAGGAGTACAGGAAAGTGATTGAAAACGAGCTGAAAACGATCTGCAACGATATTCTGGTTGTACTGGACCAGCACCTGATCCCCACTGCATTAATGGGAGAATCCAAGGTTTTCTAC ] [+] EMBL BU808198 [AGTGCAGTTGCGGATCACCACCAGGAATCGCCGACAAGCCGATAATCCTCCCTTTTAAGCGGGACGCAGCGAAAGGTCCCAGTATCCACGCACCATGGCAGACAGAGAAAACCTCGTGTACCAGGCTAAACTGGCCGAGCAGGCGGAAAGATATGACGAAATGGTGGAGTCGATGAAGAAGGTGGCGGGTTTGGACAAGGAGCTGACCATGGAAGAGAGGAACCTGCTGTCGGTTGCCTACAAGAACGTCATCGGAGCTCGACGAGCTTCTTGGAGGATAATTAGCA GCCTGGAGCAGAAAGAAGAAGGCAAAGCTGCAGAGGAGAAGATGAAAATGATCAAGGAGTACAGGAAAGTGATTGAAAACGAGCTGAAAACGATCTGCAACGATATTCTGGTTGTACTGGACAAGCACCTGATCCCCACTGCATTAATGGGAGAGTCCAAGGTTTTCTACTACAAGATGAAGGGAGATTACCACAGGTACCTGGCAGAGTTTGCTACAGGAAACGACAGGAAGGAGGCGGCGGAGAACAGTCTGATGGCGTACAAAGCTGCTAACGACATCGCCCAGAGCGAGCTCACTTTCACACACCCCATCCGTCTGGGATTGGCCCTCAACTTTTCAGTC ] [+] EMBL CA846045 [ACTGTAGTTGCGGATCACCACCAGGAATCGCCGACAAGCCGATACTTCTCCCTTTTAAGCGGGACGCAGCGAAAGGTCCCAGTATCCACGCACCATGGCAGACAGAGAAAACCTCGTGTACCAGGCTAAACTGGCCGAGCAGGCGGAAAGATATGACGAAATGGTGGAGCCGATGAAGAAGGTGGCGGGTTTGGACAAGGAGCTGACCATGGAAGAGAGGAACCTGCTGTCGGTTGCCTACAAGAACGTCATCGGAGCTCGACGAGCTTCTTGGAGGATAATTAGCA GCCTGGAGCAGAAAGAAGAAGGCAAAGCT ] [+] EMBL BU808185 [ tCTGGAGCGGATCACCACCAGGAATCGCCGACAAGCCGATAATCCTCCCTTTTAAGCGGGACGCAGCGAAAGGTCCCAGTATCCACGCACCATGGCAGACAGAGAAAACCTCGTGTACCAGGCTAAACTGGCCGAGCAGGCGGAAAGATATGACGAAATGGTGGAGTCGATGAAGAAGGTGGCGGGTTTGGACAAGGAGCTGACCATGGAAGAGAGGAACCTGCTGTCGGTTGCCTACAAGAACGTCATCGGAGCTCGACGAGCTTCTTGGAGGATAATTAGCA GCCTGGAGCAGAAAGAAGAAGGCAAAGCTGCAGAGGAGAAGATGAAAATGATCAAGGAGTACAGGAAAGTGATTGAAAACGAGCTGAAAACGATCTGCAACGATATTCTGGTTGTACTGGACAAGCACCTGATCCCCACTGCATTAATGGGAGAGTCCAAGGTTTTCTACTACAAGATGAAGGGAGATTACCACAGGTACCTGGCAGAGTTTGCTACAGGAAACGACAGGAAGGAGGCGGCGGAGAACAGTCTGATGGCGTACAAAGCTGCTAACGACATCGCCCAGAGCGAGCTCACTTCCACACACCCCATCCGTCTGGGATTGGCCCTCAACTTTTCAGg ] [+] EMBL BU804633 [ AGTTGCGGATCACCACCAGGAATCGCCGACAAGCCGATAATCCTCCCTTTTAAGCGGGACGCAGCGAAAGGTCCCAGTATCCACGCACCATGGCAGACAGAGAAAACCTCGTGTACCAGGCTAAACTGGCCGAGCAGGCGGAAAGATATGACGAAATGGTGGAGTCGATGAAGAAGGTGGCGGGTTTGGACAAGGAGCTGACCATGGAAGAGAGGAACCTGCTGTCGGTTGCCTACAAGAACGTCATCGGAGCTCGACGAGCTTCTTGGAGGATAATTAGCA GCCTGGAGCAGAAAGAAGAAGGCAAAGCTGCAGAGGAGAAGATGAAAATGATCAAGGAGTACAGGAAAGTGATTGAAAACGAGCTGAAAACGATCTGCAACGATATTCTGGTTGTACTGGACAAGCACCTGATCCCCACTGCATTAATGGGAGAATCCAAGGTTTT ] [+] EMBL CA333199 [ TGCGGATCACCACCAGGAATCGCCGACAAGCCGATAATCCTCCCTTTTAAGCGGGACGCAGCGAAAGGTCCCAGTATCCACGCACCATGGCAGACAGAGAAAACCTCGTGTACCAGGCTAAACTGGCCGAGCAGGCGGAAAGATATGACGAAATGGTGGAGTCGATGAAGAAGGTGGCGGGTTTGGACAAGGAGCTGACCATGGAAGAGAGGAACCTGCTGTCGGTTGCCTACAAGAACGTCATCGGAGCTCGACGAGCTTCTTGGAGGATAATTAGCA GCCTGGAGCAGAAAGAAGAAGGCAAAGCTGCAGAGGAGAAGATGAAAATGATCAAGGAGTACAGGAAAGTGATTGAAAACGAGCTGAAAACGATCTGCAACGATATTCTGGTTGTACTGGACAAGCACCTGATCCCCACTGCATTAATGGGAGAGTCCAAGGTTTTCTACTACAAGATGAAGGGAGATTACCACAGGTACCTGGCAGAGTTTGCTACAGGAAACGACAGGAAGGAGGCGGCGGAGAACAGTCTGATGGCGTACAAAGCTGCTAACGACATCGCCCAGAGCGAGCTCACTTCCACACACCCCATCCGTCTGGGATTGGCCCTCAACTT ] [+] EMBL BU807150 [ CCAGGAATCGCCGACAAGCCGATAATCCTCCCTTTTAAGCGGGACGCAGCGAAAGGTCCCAGTATCCACGCACCATGGCAGACAGAGAAAACCTCGTGTACCAGGCTAAACTGGCCGAGCAGGCGGAAAGATATGACGAAATGGTGGAGTCGATGAAGAAGGTGGCGGGTTTGGACAAGGAGCTGACCATGGAAGAGAGGAACCTGCTGTCGGTTGCCTACAAGAACGTCATCGGAGCTCGACGAGCTTCTTGGAGGATAATTAGCA GCCTGGAGCAGAAAGAAGAAGGCAAAGCTGCAGAGGAGAAGATGAAAATGATCAAGGAGTACAGGAAAGTGATTGAAAACGAGCTGAAAACGATCTGCAACGATATTCTGGTTGTACTGGACAAGCACCTGATCCCCACTGCATTAATGGGAGAATCCAAGGTTTTCTACTACAAGATGAAGGGAGATT ] [+] EMBL BU808572 [ GGAATCGCCGACAAGCCGATAATCCTCCCTTTTAAGCGGGACGCAGCGAAAGGTCCCAGTATCCACGCACCATGGCAGACAGAGAAAACCTCGTGTACCAGGCTAAACTGGCCGAGCAGGCGGAAAGATATGACGAAATGGTGGAGTCGATGAAGAAGGTGGCGGGTTTGGACAAGGAGCTGACCATGGAAGAGAGGAACCTGCTGTCGGTTGCCTACAAGAACGCCATCGGAGCTCGACGAGCTTCTTGGAGGATAATTAGCA GCCTGGAGCAGAAAGAAGAAGGCAAAGCTGCAGAGGAGAAGATGAAAATGATCAAGGAGTACAGGAAAGTGATTGAAAACGAGCTGAAAACGATCTGCAACGATATTCTGGTTGTACTGGACAAGCACCTGATCCCCACTGCATTAATGGGAGAATCCAAGGTTTTCTACTACAAGATGAAGGGAGATTACCACAGGTACCTGGCAGAGTTTGCTACAGGAAACGACAGGAAGGAGACGGCGGAGAACAGTCTGATGGCGTACAAAGCTGCTAACGACATCGCCCAGAGCGAGCTCACTTCCACACACCCCATCCGTCTGGGATTGGCCCTCAACTTTTCAGTCTTCTACTACGAAATCCTAAACTCGGCG] [+] EMBL BU807830 [ ATCACCGACAAGCCGATAATCCTCCCTTTTAAGCGGGACGCAGCGAAAGGTCCCAGTATCCACGCACCATGGCAGACAGAGAAAACCTCGTGTACCAGGCTAAACTGGCCGAGCAGGCGGAAAGATATGACGAAATGGTGGAGTCGATGAAGAAGGTGGCGGGTTTGGACAAGGAGCTGACCATGGAAGAGAGGAACCTGCTGTCGGTTGCCTACAAGAACGTCATCGGAGCTCGACGAGCTTCTTGGAGGATAATTAGCA GCCTGGAGCAGAAAGAAGAAGGCAAAGCTGCAGAGGAGAAGATGAAAATGATCAAGGAGTACAGGAAAGTGATTGAAAACGAGCTGAAAACGATCTGCAACGATATTCTGGTTGTACTGGACAAGCACCTGATCCCCACTGCATTAATGGGAGAGTCCAAGGTTTTCTACTACAAGATGAAGGGAGATTACCACAGGTACCTGGCAGAGTTTGCTACAGGAAACGACAGGAAGGAGGCGGCGGAGAACAGTCTGATGGCGTACAAAGCTGCTAACGACATCGCCCAGAGCGAGCTCACTTCCACACACCCCATCCGTCTGGGATTGGCCCTCAACTTTTCAGTCTTCTACTACGAAATCCTAAACTCG ] [+] EMBL FR0061719 [ AGCGAAAGGTCCCAGTATCCACGCACCATGGCAGACAGAGAAAACCTCGTGTACCAGGCTAAACTGGCCGAGCAGGCGGAAAGATATGACGAAATGGTGGAGTCGATGAAGAAGGTGGCGGGTTTGGACAAGGAGCTGACCATGGAAGAGAGGAACCTGCTGTCGGTTGCCTACAAGAACGTCATCGGAGCTCGACGAGCTTCTTGGAGGATAATTAGCA GCCTGGAGCAGAAAGAAGAAGGCAAAGCTGCAGAGGAGAAGATGAAAATGATCAAGGAGTACAGGAAAGTGATTGAAAACGAGCTGAAAACGATCTGCAACGATATTCTGGTTGTACTGGACAAGCACCTGATCCCCACTGCATTAATGGGAGAGTCCAAGGTTTTCTACTACAAGAGGAAGGGAGATTACCACAGGTACCTGGCAGAATTTGCTACAGGAAACGAC ] [+] EMBL FR0061924 [ GCGAAAGGTCCCAGTATCCACGCACCATGGCGGACAGAGAAAACCTCGTGTACCAGGCTAAACTGGCCGAGCAGGCGGAAAGATATGACGAAATGGTGGAGTCGATGAAGAAGGTGGCGGGTTTGGACAAGGAGCTGACCATGGAAGAGAGGAACCTGCTGTCGGTTGCCTACAAGAACGTCATCGGAGCTCGACGAGCTTCTTGGAGGATAATTAGCA GCCTGGAGCAGAAAGAAGAAGGCAAAGCTGCAGAGGAGAAGATGAAAATGATCAAGGAGTACAGGAAAGTGATTGAAAACGAGCTGAAAACGATCTGCAACGATATTCTGGTTGTACTGGACAAGCAC ] [+] EMBL FR0061933 [ CGCACCATGTTAGACAGAGAAAACCTCGTGTACCAGGCTAAACTGGCCGAGCAGGCGCAAAGATATGACGAAATGGTGGAGTCGATGAAGAAGGTGGCGGGTTTGGACAAGGAGCTGACCATGGAAGAGAGGAACCTGCTGTCGGTTGCCTACAAGAACGTCATCGGAGCTCGACGAGCTTCTTGGAGGATAATTAGCA GCCTGGAGCAGAAAGAAGAAGGCAAAGCTGCAGAGGAGAAGATGAAAATGATCAAGGAGTACAGGAAAGTGATTGAAAACGAGCTTGTAACGATCTGCAACGGTATTCTGGTTGGACTGGACAAGCACCTGACCCCCACTGCTTTAATGGGAGAATCC ] [+] EMBL BU808428 [ GCACCATGGCAGACAGAGAAAACCTCGTGTACCAGGCTAAACTGGCCGAGCAGGCGGAAAGATATGACGAAATGGTGGAGTCGATGAAGAAGGTGGCGGGTTTGGACAAGGAGCTGACCATGGAAGAGAGGAACCTGCTGTCGGTTGCCTACAAGAACGTCATCGGAGCTCGACGAGCTTCTTGGAGGATAATTAGCA GCCTGGAGCAGAAAGAAGAAGGCAAAGCTTTAGAGGAGAAGATGAAAATGATCAAGGAGTACAGGAAAGTGATTGAAAACGAGCTGAAAACGATCTGCAACGATATTCTGGTTGTACTGGACAAGCACCTGATCCCCACTGCATTAATGGGAGAATCCAAGGTTTTCTACTACAAGATGAAGGGAGATTACCACAGGTACCTGGCAGAGTTTGCTACAGGAAACGACAGGAAGGAGGCGGCGGAG ] [+] EMBL BU807435 [ GCACCATGGCAGACAGAGAAAACCTCGTGTACCAGGCTAAACTGGCCGAGCAGGCGGAAAGATATGACGAAATGGTGGAGTCGATGAAGAAGGTGGCGGGTTTGGACAAGGAGCTGACCATGGAAGAGAGGAACCTGCTGTCGGTTGCCTACAAGAACGTCATCGGAGCTCGACGAGCTTCTTGGAGGATAATTAGCATTCTTGGAGCAGAAAGAAGAAGGCAAAGCTGCAGAGGAGAAGATGAAAATGATCAAGGAGTACAGGAAAGTGATTGAAAACGAGCTGAAAACGATCTGCAACGATATTCTGGTTGTACTGGACAAGCACCTGATCCCCACTGCATTAATGGGAGAATCCAAGGTTTTCTACTACAAGATGAAGGGAGATTACCACAGGTACCTGGCAGAGTTTGCTACAGGAAACGACAGGAAGGAGGCGGCGGAGAACAGTCTGATGGCGTACAAAGCTGCTAACGACATCGCCCAGAGCGAGCTCACTTCCACACACCCCATCCGTCTGGGATTGGCCCTCAACTTTTCAGTCTTCTACTACGAAATCCTAAACTCGc ] [+] EMBL FR0062155 [ GTTTGGACAAGGAGCTGACCATGGAAGAGAGGAACCTGCTGTCGGGTGCCTACAAGAACGTCATCGGAGCTCGACGAGCTTCTTGGAGGATAATTAGCA GCCTGGAGCAGAAAGAAGAAGGCAAAGCTGCAGAGGAGAAGATGAAAATGATCAAGGAGTACAGGAAAGTGATTGAAAACGAGCTGGAAACGATCTGCAACGATATTCTGGGTGGACTGGACAAGCACCTGAATCCCACTGGATTAATGGGAGAGTTCAAGGGT ] consensusID : consensus_2749#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 235 fasta sequence [CCACGCACCATGGCAGACAGAGAAAATTCTTGTACCAGGCTAAACTGGCCGAGCAGGCGGAAAGATATGACGAAATGGTGGAGTCGATGAAGAAGGTGGCGGGTTTGGACAAGGAGCTGACCATGGAAGAGAGGAACCTGCTGGCGGTTGCTACAAGAACGTCATCGGAGCTCGACGAGCTTCTTGGAGGGATAATTAGCAGCCTCCACCAGAGTACCTGCGCTGAGGGGCCCCC] [+] EMBL FR0060540 [CCACGCACCATGGCAGACAGAGAAAATTCTTGTACCAGGCTAAACTGGCCGAGCAGGCGGAAAGATATGACGAAATGGTGGAGTCGATGAAGAAGGTGGCGGGTTTGGACAAGGAGCTGACCATGGAAGAGAGGAACCTGCTGGCGGTTGCTACAAGAACGTCATCGGAGCTCGACGAGCTTCTTGGAGGGATAATTAGCAGCCTCCACCAGAGTACCTGCGCTGAGGGGCCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2749#0 AGTGCAGTTGCGGATCACCACCAGGAATCGCCGACAAGCCGATAATCCTCCCTTTTAAGC 60 consensus_2749#1 ------------------------------------------------------------ consensus_2749#0 GGGACGCAGCGAAAGGTCCCAGTATCCACGCACCATGGCAGACAGAGAAAACCTCGTGTA 120 consensus_2749#1 -------------------------CCACGCACCATGGCAGACAGAGAAAAT-TCTTGTA 34 ************************** ** **** consensus_2749#0 CCAGGCTAAACTGGCCGAGCAGGCGGAAAGATATGACGAAATGGTGGAGTCGATGAAGAA 180 consensus_2749#1 CCAGGCTAAACTGGCCGAGCAGGCGGAAAGATATGACGAAATGGTGGAGTCGATGAAGAA 94 ************************************************************ consensus_2749#0 GGTGGCGGGTTTGGACAAGGAGCTGACCATGGAAGAGAGGAACCTGCTGTCGGTTGCCTA 240 consensus_2749#1 GGTGGCGGGTTTGGACAAGGAGCTGACCATGGAAGAGAGGAACCTGCTGGCGGTTGC-TA 153 ************************************************* ******* ** consensus_2749#0 CAAGAACGTCATCGGAGCTCGACGAGCTTCTTGGAGG-ATAATTAGCAGCCTGGAGCAGA 299 consensus_2749#1 CAAGAACGTCATCGGAGCTCGACGAGCTTCTTGGAGGGATAATTAGCAGCCTCCACCAGA 213 ************************************* ************** * **** consensus_2749#0 AAGAAGAAGGCAAAGCTGCAGAGGAGAAGATGAAAATGATCAAGGAGTACAGGAAAGTGA 359 consensus_2749#1 GTACCTGCGCTGAGGGGCCCCC-------------------------------------- 235 * * * * consensus_2749#0 TTGAAAACGAGCTGAAAACGATCTGCAACGATATTCTGGTTGTACTGGACAAGCACCTGA 419 consensus_2749#1 ------------------------------------------------------------ consensus_2749#0 TCCCCACTGCATTAATGGGAGAATCCAAGGTTTTCTACTACAAGATGAAGGGAGATTACC 479 consensus_2749#1 ------------------------------------------------------------ consensus_2749#0 ACAGGTACCTGGCAGAGTTTGCTACAGGAAACGACAGGAAGGAGGCGGCGGAGAACAGTC 539 consensus_2749#1 ------------------------------------------------------------ consensus_2749#0 TGATGGCGTACAAAGCTGCTAACGACATCGCCCAGAGCGAGCTCACTTCCACACACCCCA 599 consensus_2749#1 ------------------------------------------------------------ consensus_2749#0 TCCGTCTGGGATTGGCCCTCAACTTTTCAGTCTTCTACTACGAAATCCTAAACTCGGCG 658 consensus_2749#1 ----------------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |