|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2753#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 626 fasta sequence
[AGTGAGCGAGAGACACCATGAAGGCGTCCGGCAC-ACTTCGGGAATATAAAGTCATTGGGCGCCTGCTGCCCTCTGCCAAGAATCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGCCCCCAACCACATTGTGGCAAAGTCTCGCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCCTGAAGGTAAAGAATTTTGGTATCTGGCTGCGCTATGATTCTCGTAGTGGAACTCACAACATGTACAGAGAGTACAGAGACCTGACCACCTCTGGAGCCGTCACGCAGTGCTATCGTGATATGGGCGCCCGCCACCGTGCACGTGCCCACTCCATCCAGATCATGAAGGTCCAGGTGATTGCTGCCAACAAGTGTCGCAGACCTGCCATCAAGCAATTCCACGACTCAAAGATCAAGTTCCCCCTCCCCCATCGGGTCCTGCGGCGCCAACACAAACCTCGCTTCACCACCAAGCGACCAAACACCTTCTACTGAGATGGTTTTCATTGTTTTCGCGAGGAAATAAAACTACGATGACAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC]
[+] EMBL CA589497 [AGTGAGCGAGAGACACCATGAAGGCGTCCGGCAC ACTTCGGGAATATAAAGTCATTGGGCGCCTGCTGCCCTCTGCCAAGAATCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGCCCCCAACCACATTGTGGCAAAGTCTCGCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCCTGAAGGTAAATAATTTTGGTATCTGGCTGCGCTATGATTCTCGTAGTGGAACTCACAACATGTACAGAGAGTACAGAGACCTGACCACCTCTGGAGCCGTCACGCAGTGCTATCGTGATATGGGCGCCCGCCACCGTGCACGTGCCCACTCCATCCAGATCATGAAGGTCCAGGTGATTGCTGCCAACAAGTGTCGCAGACCTGCCATCAAGCAATTCCACGACTCAAAGATCAAGTTCCCCCTCCCCCATCGGGTCCTGCGGCGCCAACACAAACCTCGCTTCACCACCAAGCGACCAAACACCTTCTACTGAGATGGTTTTCATTGTTTTCGCGAGGA ]
[+] EMBL FR0056897 [ TCCGGCACAACTTCGGGAATATAAAGTCATTGGGCGCCTGCTGCCCTCTGCCAAGAATCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGCCCCCAACCACATTGTGGCAAAGTCTCGCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCCTGAAGGTAAAGAATTTTGGTATCTGGCTGCGCTATGATTCTCGTAGTGGAACTCACAACATGTACAGAGAGTACAGAGACCTGACCACCTCTGGAGCCGTCACGCAGTGCTATCGTGATATGGGCGCCCGGCACCGTGCACGTGCCCA ]
[+] EMBL CA846925 [ GCAC ACTTCGGGAATATAAAGTCATTGGGCGCCTGCTGCCCTCTGCCAAGAATCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGCCCCCAACCACATTGTGGCAAAGTCTCGCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCCTGAAGGTAAAGAATTTTGGTATCTGGCTGCGCTATGATTCTCGTAGTGGAACTCACAACATGTACAGAGAGTACAGAGACCTGACCACCTCTGGAGCCGTCACGCAGTGCTATCGTGATATGGGCGCCCGCCACCGTGCACGTGCCCACTCCATCCAGATCATGAAGGTCCAGGTGATTGCTGCCAACAAGTGTCGCAGACCTGCCATCAAGCAATTCCACGACTCAAAGATCAAGTTCCCCCTCCCCCATCGGGTCCTGCGGCGCCAACACAAACCTCGCTTCACCACCAAGCGACCA ]
[-] EMBL CA332210 [ AC ACTTCGGGAATATAAAGTCATTGGGCGCCTGCTGCCCTCTGCCAAGAATCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGCCCCCAACCACATTGTGGCAAAGTCTCGCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCCTGAAGGTAAAGAATTTTGGTATCTGGCTGCGCTATGATTCTCGTAGTGGAACTCACAACATGTACAGAGAGTACAGAGACCTGACCACCTCTGGAGCCGTCACGCAGTGCTATCGTGATATGGGCGCCCGCCACCGTGCACGTGCCCACTCCATCCAGATCATGAAGGTCCAGGTGATTGCTGCCAACAAGTGTCGCAGACCTGCCATCAAGCAATTCCACGACTCAAAGATCAAGTTCCCCCTCCCCCATCGGGTCCTGCGGCGCCAACACAAACCTCGCCTCACCACCAAGCGACCAAACACCTTCTACTGAGATGGTTTTCATTGTTTTCGCGAGGAAATAAAACTACGATGAC ]
[-] EMBL CA846824 [ CGGGAATATAAAGTCATTGGGCGCCTGCTGCCCTCTGCCAAGAATCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGCCCCCAACCACATTGTGGCAAAGTCTCGCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCCTGAAGGTAAAGAATTTTGGTATCTGGCTGCGCTATGATTCTCGTAGTGGAACTCACAACATGTACAGAGAGTACAGAGACCTGACCACCTCTGGAGCCGTCACGCAGTGCTATCGTGATATGGGCGCCCGCCACCGTGCACGTGCCCACTCCATCCAGATCATGAAGGTCCAGGTGATTGCTGCCAACAAGTGTCGCAGACCTGCCATCAAGCAATTCCACGACTCAAAGATCAAGTTCCCCCTCCCCCATCGGGTCCTGCGGCGCCAACACAAACCTCGCTTCACCACCAAGCGACCAAACACCTTCTACTGAGATGGTTTTCATTGTTTTCGCGAGGAAATAAAACTACGATGCCAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC]
[+] EMBL FR0057129 [ TATAAAGTCATTGGGCGCCTGCTGCCCTCTGCCAAGAATCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGCCCCCAACCACATTGTGGCAAAGTCTCGCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCCTGAAGGTAAAGAATTTTGGTATCTGGCTGCGCTATGATTCTCGTAGTGGAACTCACAACATGTACAGAGAGTACAGAGACCTGACCACCTCTGGAGCCGTCACGCAGTGCTATCGTGATATGGGCGCCCGCCACCGTGCACGTGCCCACTCCATCCAGATCATGAAGGTCCAGGTGATTGCTGCCAACAAGTGTCGCAGACCTGCCATCAAGCAATTCCACGACTCAAAGATCAAGTTCCCCCTCCCCCATCGGGTCCTGCGGNGCCAACACAAACCTCGCTTCACCACCAAGCGACCAGACACCTTCTACTGAGATGGg ]
[+] EMBL FR0056144 [ AAGTCATTGGGCGCCTGCTGCCCTCTGCCAAGAATCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGCCCCCAACCACATTGTGGCAAAGTCTCGCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCCTGAAGGTAAAGAATTTTGGTATCTGGCTGCGCTATGATTCTCGTAGTGGAACTCACAACATGTACAGAGAGTACAGAGACCTGACCACCTCTGGAGCCGTCACGCAGTGCTATCGTGATATGGGCGCCCGCCACCGTGCACGTGCCCACTCCATCCAGATCATGAAGGTCCAGGTGATTGCTGCCAACAAGTGTCGCAGACCTGCCATCAAGCAATTCCACGACTCANAGATCAAGTTCCCCCTCCCCCATCGGGTCCTGCGGCGCCAACACAAACCTCG ]
[+] EMBL FR0056213 [ GCGCCTGCTGCCCTCTGCCAAGAATCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGCCCCCAACCACATTGTGGCAAAGTCTCGCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCCTGAAGGTAAAGAATTTTGGTATCTGGCTGCGCTATGATTCTCGTAGTGGAACTCACAACATGTACAGAGAGTACAGAGACCTGACCACCTCTGGAGCCGTCACGCAGTGCTATCGTGATATGGGCGCCCGCCACCGTGCACGTGCCCACTCCATCCAGATCATGAACGTCCAGGTGATTGCTGCCAGCAAGTGTCGCAAACCTGCCATCAAGCAATTCCACGACTCAAAGATCAAGTTGCCCg ]
[+] EMBL FR0058658 [ GCGCCTGCTGCCCTCTGGGGAGAATCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGCCCCCAACCACATTGGGGCAAAGTCTCGCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGACCACGAGAAGACGCCCCTGAAGGTAAAGAATTTTGGTATCTGGCTGCGCTATGATTCTCGTAGTGGAACTCACAACATGTACAGAGAGGACAGAGACCTGACCACCTCTGGAGCCGGCACGCAGGGCTATCGTGATATGGGCGCCCGCCACCGTGCACGTGCCCACTCCATTCAGATCATG ]
[+] EMBL FR0056200 [ cGCGCCTGCTGCCCTCTGCCAAGAATCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGGCGCCAACCAGATTGTGGTAAAGTCTCGCTTCTGGTACGTTGTTTCCCAACTAAGGCATATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCGTGATGGTAAAGACTTTTGGCA ]
[+] EMBL FR0056473 [ TGCTGCCCTCTGCCAAGAATCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGCCCCCAACCACATTGTGGCAAAGTCTCGCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCCTGAAGGTAAAGAATTTTGGTATCTGGCTGCGCTATGATTCTCGTAGTGGAACTCACAACATGTACAGAGAGTACAGAGACCTGACCACCTCTGGAGCCGTCACGCAGTGCTATCGTGATATGGGCGCCCGCCACCGTGCACGTGCCCACTCCATCCAGATCATGAAGGTCCAGGTGATTGCTGCCAACAAGTGTCGCAGACCTGCCATCAAGCAATTCCACGACTCAGAGATCAAGTT CCCCTCCCCCATCGGG ]
[+] EMBL FR0057471 [ CCCTCTGCCAAGAATCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGCCCCCAACCACATTGTGGCAAAGTCTCGCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCCTGAAGGTAAAGAATTTTGGTATCTGGCTGCGCTATGATTCTCGTAGTGGAACTCACAACATGTACAGAGAGTACAGAGACCTGACCACCTCTGGAGCCGTCACGCAGTGCTATCGTGATATGGGCGCCCGCCACCGTGCACGTGCCCACTCCATCCAGATCATGAAGGTCCAGGTGATTGCTGCCAACAAGTGTCGCAGACCTGCCATCAAGCAATTCCACGACTCAGAGATCAGGTTC ]
[+] EMBL CA845636 [ AAGAATCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGCCCCCAACCACATTGTGGCAAAGTCTCGCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCCTGAAGGTAAAGAATTTTGGTATCTGGCTGCGCTATGATTCTCGTAGTGGAACTCACAACATGTACAGAGAGTACAGAGACCTGACCACCTCTGGAGCCGTCACGCAGTGCTATCGTGATATGGGCGTCCGCCACCGTGCACGTGCCCACTCCATCCAGATCATGAAGGTCCAGGTGATTGCTGCCAACAAGTGTCGCAGACCTGCCATCAAGCAATTCCACGACTCAAAGATCAAGTTCCCCCTCCCCCATCGGGT ]
[+] EMBL FR0057044 [ AAGAATCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGCCCCCAACCACATTGTGGCAAAGTCTCGCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCCTGAAGGTAAAGAATTTTGGTATCTGGCTGCGCTATGATTCTCGTAGTGGAACTCACAACATGTACAGAGAGTACAGAGACCTGACCACCTCTGGAGCCGTCACGCAGTGCTATCGTGATATGGGCGCCCGCCACCGTGCACGTGCCCACTCCATCCAGATCATGAAGGTCCAGGTGATTGCTGCCAACAAGTGTCGCAGACCTGCCATCAAGCAATTCCACGACTCANAGATCAAGTTCCCCCTCCCCCATCGGGTCCTGCGGCGCCAACACAAACCTCGCTT ]
[+] EMBL CA846624 [ TCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGCCCCCAACCACATTGTGGCAAAGTCTCGCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCCTGAAGGTAAAGAATTTTGGTATCTGGCTGCGCTATGTTTCTCGTAGTGGAACTCACAACATGTACAGAGAGTACAGAGACCTGACCACCTCTGGAGCCGTCACGCAGTGCTATCGTGATATGGGCGCCCGCCACCGTGCACGTGCCCACTCCATCCAGATCATGAAGGTCCAGGTGATTGCTGCCAACAAGTGTCGCAGACCTGCCATCAAGCAATTCCACGACTCAAAGATCAAGTTCCCCCTCCCCCATCGGGTCCTGCGGCGCCAACACAAACCTCGCTTCACCACCAAGCGACCAAACACCTTCTACTGAGATGGTTTTCATTGT ]
[+] EMBL FR0057393 [ CTCCTCTGTACCGGATGAGGATCTTTGCCCCCAACCACATTGTGGCAAAGTCTCGCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCCTGAAGGTAAAGAATTTTGGTATCTGGCTGCGCTATGATTCTCGTAGTGGAACTCACAACATGTACAGAGAGTACAGAGACCTGACCACCTCTGGAGCCGTCACGCAGTGCTATCGTGATATGGGCGCCCGCCACCGTGCACGTGCCCACTCCATCCAGATCATGAAGGTCCAGGTGATTGCTGCCAACAAGTGTCGCAGACCTGCCATCAAGCAATTCCACGACTCANAGATCAAGTT CCCCTCGCCCATCGGGTCCTGCGGCGCCAACACA ]
consensusID : consensus_2753#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 197 fasta sequence
[CACTTCGGGAATATAAAGTCATTGGGCGCCTGCTGCCCTCTGCCAAGAATCCTGCCCCTTCTCTGTACCGGAGAGGATCTTTGGCCCCCAACACATTGTGGCAAAGTCTNCGCTCTCGGTACTTGGTTTCCCACTTAAGGAGATGAAAAAGGGCCTCGGGGAGAATGGCTACTGGGGCCTGGGCCACCAAAAAAACC]
[+] EMBL CA588953 [CACTTCGGGAATATAAAGTCATTGGGCGCCTGCTGCCCTCTGCCAAGAATCCTGCCCCTTCTCTGTACCGGAGAGGATCTTTGGCCCCCAACACATTGTGGCAAAGTCTNCGCTCTCGGTACTTGGTTTCCCACTTAAGGAGATGAAAAAGGGCCTCGGGGAGAATGGCTACTGGGGCCTGGGCCACCAAAAAAACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2753#0 AGTGAGCGAGAGACACCATGAAGGCGTCCGGCACACTTCGGGAATATAAAGTCATTGGGC 60
consensus_2753#1 ---------------------------------CACTTCGGGAATATAAAGTCATTGGGC 27
***************************
consensus_2753#0 GCCTGCTGCCCTCTGCCAAGAATCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGCCC 120
consensus_2753#1 GCCTGCTGCCCTCTGCCAAGAATCCTGCCCCTTCTCTGTACCGGA-GAGGATCTTTGGCC 86
******************************** ************ *********** **
consensus_2753#0 CCAACCACATTGTGGCAAAGTCTC-GCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATG 179
consensus_2753#1 CCCAACACATTGTGGCAAAGTCTNCGCTCTCGGTACTTGGTTTCCCACTTAAGGA-GATG 145
** * ****************** *** ******* ******** ****** ****
consensus_2753#0 AAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCCTGAAG 239
consensus_2753#1 AAAAAGGGCCTCGGGGAGAATGGCTACTGGGGCCTGGGCCACCAAAAAAACC-------- 197
** **** * ** **** ** ****** ******* **** * ** * *
consensus_2753#0 GTAAAGAATTTTGGTATCTGGCTGCGCTATGATTCTCGTAGTGGAACTCACAACATGTAC 299
consensus_2753#1 ------------------------------------------------------------
consensus_2753#0 AGAGAGTACAGAGACCTGACCACCTCTGGAGCCGTCACGCAGTGCTATCGTGATATGGGC 359
consensus_2753#1 ------------------------------------------------------------
consensus_2753#0 GCCCGCCACCGTGCACGTGCCCACTCCATCCAGATCATGAAGGTCCAGGTGATTGCTGCC 419
consensus_2753#1 ------------------------------------------------------------
consensus_2753#0 AACAAGTGTCGCAGACCTGCCATCAAGCAATTCCACGACTCAAAGATCAAGTTCCCCCTC 479
consensus_2753#1 ------------------------------------------------------------
consensus_2753#0 CCCCATCGGGTCCTGCGGCGCCAACACAAACCTCGCTTCACCACCAAGCGACCAAACACC 539
consensus_2753#1 ------------------------------------------------------------
consensus_2753#0 TTCTACTGAGATGGTTTTCATTGTTTTCGCGAGGAAATAAAACTACGATGACAAAAAAAA 599
consensus_2753#1 ------------------------------------------------------------
consensus_2753#0 AAAAAAAAAAACTCGAGACTAGTTCTC 626
consensus_2753#1 ---------------------------
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |