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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2770#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 756 fasta sequence
[CTCTCAATCGTGTTCGCAGGTTTCTCTGCTGAGTCGCTGTGCCTTAGGATCCTGGACTCTCAGTGTTCTCTGCTCATCACTGCAGATGGCTTCTATCGAGGAGATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCTCCTCCAGCCAAGCGCTCCTGTCCCGATCTTCAGGTGCCGTGGAACCCTGAGGTGGACCTGTGCTGGCACACTCTGGTTCGCGGGGCCTCGGACGAGTGTGAACCGGAGTGGTGTGAGTCTGAAGACCCGCTCTTCATCCTCTACACCAGTGGCTCCACTGGGAAACCCAAGGGGGTTCTCCACACCATCAGCGGCTACATGCTCTACACCGCCACCACCTTCAAACTGGTGTTTGACCACCAGCCCCATGATGTCTACTGGTGTACGGCGGACATCGGGTGGATCACCGGACACTCGTACATCACCTACGGCCCCCTTGCTAACGGAGCCACCAGTGTGCTGTTCGAGGGCCTGCCCACATACCCGGACGTCAGTCGCTTATGGGAGGTGGTGGACCAATATCAGGTGACCAAGTTCTACTCGGCGCCGACCGCCATCAGGATGCTGATGGAGTACGGCAGCGAGCCGGTGCAGAAGTCACGCCGGGAGTCTCTGAAGGTTCTGGGGAACGGTGGG]
[+] EMBL CA588253 [CTCTCAATCGTGTTCGCAGGTTTCTCTGCTGAGTCGCTGTGCCTTAGGATCCTGGACTCTCAGTGTTCTCTGCTCATCACTGCAGATGGCTTCTATCGAGGAGATAAACTGATCAACCTGAGGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCTCCTCCAGCCAAGCGCTCCTGTCCCGATCTTCAGGTGCCGTGGAACCCTGAGGTGGACCTGTGCTGGCACACTCTGGTTCGCGGGGCCTCGGACGAGTGTGATCCGGAGTGGTGTGAGTCTGAAGACCCGCTCTTCATCCTCTACACCAGTGGCTCCACTGGGAAACCCAAGGGGGTTCTCCACACCATCAGCGGCTACATGCTCTACACCGCCACCACCTTCAAACTGGTGTTTGACCACCAGCCCCATGATGTCTACTGGTGTACGGCGGACATCGGGTGGATCACCGGACACTCGTACATCACCTACGGCCCCCTTGCTAACGGAGCCACCAGTGTGCTGTTCGAGGGCCTGCCCACATACCCGGACGTCAGTCGCTTATGGGAGGTGGTGGACCAATATCAGGTGACCAAGTTCTACTCGGCGCCGACCGCCATCAGGATGCTGATGGAGTACGGCAGCGAGCCGGTGCAGAAGTCACGCCGGGAGTCTCTGAAGGTTCTGGGGAACGGTGGG]
[+] EMBL CA589890 [ CTCTGCTCATCACTGCAGATGGCTTCTATCGAGGATATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCTCCTCCAGTCATGTTCTCCTGTCCCGATCTTCAGGTGCCGTGGAACCCTGAGGTGGACCTGTGCTGGAACACTCTGGTTCGCGGGGCCTCGGACGAGTGTGAACCGGATTGGTGCGAGTCTGAAGACCCGCTCTTCATCCTCTACACCAGTGGCTCCCCTGTGAAACCCAAAGGGGCTCTCCACACCATCAGCGGCTAC ]
[+] EMBL FR0059460 [ tTGCAGATGGCTTCTATCGACCAGATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCTCCTCCAGCCAAGCGCTCCTGTCCCGATCTTCAGGTGCCGGGGAACCCTGAGGTGGACCTGTGCTGGCACACTCTGGTTCGCGGGGCCTCGGACGAGTGTGAACCGGAGCGGTGTGAGTCTGAAGACCCGCTCTTCATCCTCTACACCAG GGCTCCACTGGGAAAACCAAGGGGGTTCTCCACACCATCAGC ]
consensusID : consensus_2770#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 633 fasta sequence
[GGTTTCTCTGCTGAGTCGCTGTGTGAAAGGATCCTGGACTCTCAGTGTTCTCTGCTCATCACTGCAGATGGCTTCTATCGAGGAGATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCTCCTCCAGCCAAGCGCTCCTGTCCCGATCTTCAGCAGGATAAACCGACCAAAGTAAAGAAAGCGCGTCCTGTACCGCAGGTGCC-GTGGAACCCTGAGGTGGACCTGTGCTGGCACACTCTGGTTCGCGGGGCCTCGGACGAGTGTGAACCGGAGTGGTGTGAGTCTGAAGACCCGCTCTTCATCCTCTACACCAGTGGCTCCACTGGGAAACCCAAGGGGGTTCTCCACACCATCAGCGGCTACATGCTCTACACCGCCACCACCTTCAAACTGGTGTTTGACCACCAGCCCCATGATGTCTACTGGTGTACGGCGGACATCGGGTGGATCACCGGACACTCGTACATCACCTACGGCCCCCTTGCTAACGGAGCCACCAGTGTGCTGTTCGAGGGCCTGCCCACATACCCG]
[+] EMBL CA590202 [GGTTTCTCTGCTGAGTCGCTGTGTGAAAGGATCCTGGACTCTCAGTGTTCTCTGCTCATCACTGCAGATGGCTTCTATCGAGGAGATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCTCCTCCAGCCAAGCGCTCCTGTCCCGATCTTCAGCAGGATAAACCGACCAAAGTAAAGAAAGCGCGTCCTGTACCGCAGGTGCC GTGGAACCCTGAGGTGGACCTGTGCTGGCACACTCTGGTTCGCGGGGCCTCGGACGAGTGTGAACCGGAGTGGTGTGAGTCTGAAGACCCGCTCTTCATCCTCTACACCAGTGGCTCCACTGGGAAACCCAAGGGGGTTCTCCACACCATCAGCGGCTACATGCTCTACACCGCCACCACCTTCAAACTGGTGTTTGACCACCAGCCCCATGATGTCTACTGGTGTACGGCGGACATCGGGTGGATCACCGGACACTCGTACATCACCTACGGGCCCCTTGCTAACGGAGCCACCAGTGTGCTG ]
[+] EMBL CA590648 [GGTTTCTCTGCTGAGTCGCTGTGTGAAAGGATCCTGGACTCTCAGTGTTCTCTGCTCATCACTGCAGATGGCTTCTATCGAGGAGATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAG ]
[+] EMBL BU808226 [GGTTTCTCTGCTGAGTCGCTGTGTGCAAGGATCCTGGACTCTCAGTGTTCTCTGCTCATCACTGCAGATGGCTTCTATCGAGGAGATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCTCCTCTTTTCAAGCGCTCCTGTCCCGATCTTCAGCAGGATAAACCGACCAAAGTAAAGAAAGCGCGTCCTGTACCGCAGGTGCC GTGGAACCCTGAGGTGGACCTGTGCTGGCACACTCTGGTTCGCGGGGCCTCGGACGAGTGTGAACCCGAGTGGTGTGAGTCTGAAGACCCGCTCTTCATCCTCTACACCAGTGGCTCCACTGGGAAACCCAAGGGGGTTCTCCACACCATCAGCGGCTACATGCTCTACACCGCCACCACCTTCAAACTGGTGTTTGACCACCAGCCCCATGATGTC ]
[+] EMBL FR0061382 [ GTCGCTGTGTGAAAGGATCCTGGACTCTCAGTGTTCTCTGCTCATCACTGCGGAGGGCTTCTATCGAGGAGATAAACTGCCCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAAGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCTCCTCCAGCCAAGCGCTCCTGTCCCGATCTT CAGGATAAACCGACCAGAGTAAAGAAAGCGCGTCCTGTACCGCAGGTGCC GAGGAACCCTGAGGCGGAACCTGGCTGGCACACTtct ]
[+] EMBL CA589128 [ GTGTGCAAGGATCCTGGACTCTCAGTGTTCTCTGCTCATCACTGCAGATGGCTTCTATCGAGGAGATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCTCCTCCAGCCAAGCGCTCCTGTCCCGATCTTCAGCAGGATAAACCGACCAAAGTAAAGAAAGCGCGTCCTGTACCGCAGGTGCC GTGGAACCCTGAGGTGGACCTGTGCTGGCACACTCTGGTTCGCGGGGCCTTGGACGAGTGTGAACCGGAGTGGTGTGAGTCTGAAGACCCGCTCTTCATCCTCTACACCAGTGGCTCCACTGGGAAACCCAAGGGGGTTCTCCACACCATCAGCGGCTACATGCTCTACACCGCCACCACCTTCAAACTGGTGTTTGACCACCAGCCCCATGATGTCTACTGGTGTACGGCGGACATCGGGTGGATCACCGGACACTCGTACATCACCTACGGCCCCCTTGCTAACGGAGCCACC ]
[+] EMBL FR0060592 [ CTCTGCTCATCACTGCAGATGGCTTCTATCGAGCAGATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGGTGAAGCACTTGTGCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGACTTCGTCAGCCAAGCGCTTCTGTCCCGATCTTCAGCAGGATAAACCGACC ]
[+] EMBL FR0060869 [ TGGGGATCACTGCAGATGGCTTCTATCGAGGAGATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCTCCTACAGCCAAGCGCTCCTGTTCCGATCTTCAGCAGG ]
[+] EMBL FR0062802 [ GCTCATCACTGCAGATGGGTTCTATCGAGGAGATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCTCCTCCAGCCAAGCGCTCCTGTCCCGATCTTCAGCAGGATAAACCGACCAAAGTAAAGAAAGCGCGTCCTGTACCGCAGGGGCC GTGGAACCCTGAGGAGGACCTGTGCTGGCACACTCTGGTTCGCGGGGCCTCGGACGAGTGTGAACCGGAGTGGTGGGAGTCTGAAGACCCGCTTTTCATCCTCTACACCAGGGGCTCCACTTGGGAAACCCAGGGGG ]
[+] EMBL FR0061699 [ CTCATCACTGCAGATGGCGGCTATCGAGGAGATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCTCCTCCAGCCAAGCGCTCCTGTCCCGATCTT CAGGATAAACCGACCAAAGTAAAGAAAGCGCGTCCTGTACCGCAGGTGCCGGTGGAACCCTGAGGTGGACCTGTGCTGGCACACTCTGGTTCGCGGGGCCTCGGACGAGTGTGAACCGGAGTGGTGTGAGTCTGAAGACCCGCTCTTCATCCTCTACACCAGTGGCTTCACTGGGAAACCCAAGGGGGTTCTCCACACCATCAGCGGCTACATGCTCTACAC ]
[+] EMBL FR0059431 [ CTCATCACTGCAGATGGCTTCTATCGAGGAGATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGACTCCCAGTCTCCTCCAGCCAAGCGCTCCTGTCCCGATCTTCAGCAGGATAAACCGACCAAAGTAAAGAAAGCGCGGCCTGTACCGCAGGTGCC GTGGAACCCTGAGGTGGAC ]
[+] EMBL FR0059512 [ CATCACTGCAGATGGCTTCTATCGAGGAGATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCTCCTCCAGCCAAGCGCTCCTGTCCCGATCTTCAGCAGGATAAACCGACCAAAGTAAAGAAAGCGCGGTCTGTACCGCAGGT ]
[+] EMBL FR0060750 [ CATCACTGCAGATGNCTTCTATCCAGNAGATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGGCTCCTCCAGCCAAGCGCTCCTGTTCCGATCTTCAGCAGGATAAACCGACCAAAGTAAAG ]
[+] EMBL FR0060247 [ ATCACTGCAGATGGCTTCTATCGAGGAGATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCTCCTCCAGCCAAGCGCTCCTGTCCCGATCTT CAGGATAAACCGACCAAAGTAAAGAAAGCGCGTCCTGTACCGCAGGTGCC GTGGAACCCTGAGGTGGACCTGTGCTGGCACACTCTGGTTCGCGGGGCCTCGGACGAGTGTGAACCGG ]
[+] EMBL FR0058968 [ AGATGGGTGCTATCGAGGAGATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCTCCTCCAGCCAAGCGCTCCTGTCCCGATCTT CAGGATAAACCGACCAGAGTAAAGAAAGCGCGTCCTGTACCGCAGTGGCC GTGGAACCCTGAGGTGGA ]
[+] EMBL CA846158 [ AGGAGATAAACTGATCATCCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCTCCTCCAGCCAAGCGCTCCTGTCCCGATCTTCAGCAGGATAAACCGACCAGAGTAAAGAAAGCGCGTCCTGTACCGCAGGTGCC GTGGAACCCTGAGGTGTTTTTGTGCTGGCACACTCTGGTTCGCGGGGCCTCGGACGAGTGTGAACCGGAGTGGTGTGAGTCTGAAGACCCGCTCTTCATCCTCTACACCAGTGGCTCCACTGGGAAACCCAAGGGGGTTCTCCACACCATCAGCGGCTACATGCTCTACACCGCCACCACCTTCAAACTGGTGTTTGACCACCAGCCCCATGATGTCTACTGGTGTACGGCGGACATCGGGTGGATCACCGGACACTCGTACATCACCTACGGCCCCCTTGCTAACGGAGCCACCAGTGTGCTGTTCGAGGGCCTGCCCACATACCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2770#0 CTCTCAATCGTGTTCGCAGGTTTCTCTGCTGAGTCGCTGTGCCTTAGGATCCTGGACTCT 60
consensus_2770#1 ------------------GGTTTCTCTGCTGAGTCGCTGTGTGAAAGGATCCTGGACTCT 42
*********************** ***************
consensus_2770#0 CAGTGTTCTCTGCTCATCACTGCAGATGGCTTCTATCGAGGAGATAAACTGATCAACCTG 120
consensus_2770#1 CAGTGTTCTCTGCTCATCACTGCAGATGGCTTCTATCGAGGAGATAAACTGATCAACCTG 102
************************************************************
consensus_2770#0 AAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAG 180
consensus_2770#1 AAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAG 162
************************************************************
consensus_2770#0 TGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCT 240
consensus_2770#1 TGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCT 222
************************************************************
consensus_2770#0 CCTCCAGCCAAGCGCTCCTGTCCCGATCTTCAG--------------------------- 273
consensus_2770#1 CCTCCAGCCAAGCGCTCCTGTCCCGATCTTCAGCAGGATAAACCGACCAAAGTAAAGAAA 282
*********************************
consensus_2770#0 ------------------GTGCCGTGGAACCCTGAGGTGGACCTGTGCTGGCACACTCTG 315
consensus_2770#1 GCGCGTCCTGTACCGCAGGTGCCGTGGAACCCTGAGGTGGACCTGTGCTGGCACACTCTG 342
******************************************
consensus_2770#0 GTTCGCGGGGCCTCGGACGAGTGTGAACCGGAGTGGTGTGAGTCTGAAGACCCGCTCTTC 375
consensus_2770#1 GTTCGCGGGGCCTCGGACGAGTGTGAACCGGAGTGGTGTGAGTCTGAAGACCCGCTCTTC 402
************************************************************
consensus_2770#0 ATCCTCTACACCAGTGGCTCCACTGGGAAACCCAAGGGGGTTCTCCACACCATCAGCGGC 435
consensus_2770#1 ATCCTCTACACCAGTGGCTCCACTGGGAAACCCAAGGGGGTTCTCCACACCATCAGCGGC 462
************************************************************
consensus_2770#0 TACATGCTCTACACCGCCACCACCTTCAAACTGGTGTTTGACCACCAGCCCCATGATGTC 495
consensus_2770#1 TACATGCTCTACACCGCCACCACCTTCAAACTGGTGTTTGACCACCAGCCCCATGATGTC 522
************************************************************
consensus_2770#0 TACTGGTGTACGGCGGACATCGGGTGGATCACCGGACACTCGTACATCACCTACGGCCCC 555
consensus_2770#1 TACTGGTGTACGGCGGACATCGGGTGGATCACCGGACACTCGTACATCACCTACGGCCCC 582
************************************************************
consensus_2770#0 CTTGCTAACGGAGCCACCAGTGTGCTGTTCGAGGGCCTGCCCACATACCCGGACGTCAGT 615
consensus_2770#1 CTTGCTAACGGAGCCACCAGTGTGCTGTTCGAGGGCCTGCCCACATACCCG--------- 633
***************************************************
consensus_2770#0 CGCTTATGGGAGGTGGTGGACCAATATCAGGTGACCAAGTTCTACTCGGCGCCGACCGCC 675
consensus_2770#1 ------------------------------------------------------------
consensus_2770#0 ATCAGGATGCTGATGGAGTACGGCAGCGAGCCGGTGCAGAAGTCACGCCGGGAGTCTCTG 735
consensus_2770#1 ------------------------------------------------------------
consensus_2770#0 AAGGTTCTGGGGAACGGTGGG 756
consensus_2770#1 ---------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |