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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2773#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 866 fasta sequence
[GACGCCGGTGGTAGGGGAGGCTTTCGCGGAGGTTTTGGCGCAGGTGGACGCGGTCGGGGCCGC-GGACGCGGCAGAGGCCGTGGAAGGGGCCGCGGTGCCCGGGGCGGCAAGTCCGAGGACAAGGAATGGGTTCCAGTCACCAAGCTGGGTCGCCTGGTTAAGGACATGAAGATCAAGACTCTAGAGGAGATCTATCTGTACTCTCTGCCCATCAAGGAGTCTGAGATCATTGACTTCTTCCTGGGATCTGGTCTGAAGGATGAGGTGCTCAAGATCATGCCTGTCCAGAAACAGACCCGGGCTGGTCAGCGCACCAGGTTCAAGGCCTTTGTTGCCATTGGCGACTACAATGGTCACGTGGGTCTGGGAGTGAAGTGCTCCAAAGAGGTGGCCACCGCCAT-CCGTGGGGCGATCATCCTTGCCAAGCTGTCCATTGTCCCCGTCAGGAGAGGTTATTGGGGAAACAAGATCGGTAAGCCCCACACCGTACCCTGCAAGGTGACGGGCCGCTGCGGCTC-GGTCCTGGTGCGTCTCATCCCGGCACCCCGTGGTACTGGAATCGTGTCGGCTCCCGTGCCCAAGAAGCTGCTCATGATGGCCGGTATTGATGACTGCTACACCTCCGCCCGAGGCTGCACAGCCACCCTTGGAAACTTTGCCAAGGCCACCTTTGACGCCATCTCAAAGACGTACAGCTACTTGACCCCTGACCTGTGGAAGGAGACCGTCTTCACCAAGTCTCCCTACCAGGAGTTCACGGACCATCTGGCCAA-GACTCACACCAGGGTGTCTGTGCAGAGGGGACAGACCATGCAGGCACCCGCCTCATAAACACCGTTGAGAACGGCTGAATAAAATCCTGAAAA]
[+] EMBL CA846612 [GACGCCGGTGGTAGGGGAGGCTTTCGCGGAGGTTTTGGCGCAGGTGGACGCGGTCGGGGCCGC GGACGCGGCAGAGGCCGTGGAAGGGGCCGCGGTGCCCGGGGCGGCAAGTCCGAGGACAAGGAATGGGTTCCAGTCACCAAGCTGGGTCGCCTGGTTAAGGACATGAAGATCAAGACTCTAGAGGAGATCTATCTGTACTCTCTGCCCATCAAGGAGTCTGAGATCATTGACTTCTTCCTGGGATCTGGTCTGAAGGATGAGGTGCTCAAGATCATGCCTGTCCAGAAACAGACCCGGGCTGGTCAGCGCACCAGGTTCAAGGCCTTTGTTGCCATTGGCGACTACAATGGTCACGTGGGTCTGGGAGTGAAGTGCTCCAAAGAGGTGGCCACCGCCAT CCGTGGGGCGATCATCCTTGCCAAGCTGTCCATTGTCCCCGTCAGGAGAGGTTATTGGGGAAACAAGATCGGTAAGCCCCACACCGTACCCTGCAAGGTGACGGGCCGCTGCGGCTC GGTCCTGGTGCGTCTCATCCCGGCACCCCGTGGTACTGGAATCGTGTCGGCTCCCGTGCCCAAGAAGCTGCTCATGATGGCCGGTATTGATGACTGCTAC ]
[+] EMBL BU808611 [ CGCCGGTGGTAGGGGAGGCTTTCGCGGAGGTTTTGGCGCAGGTGGACGCGGTCGGGGCCGC GGACGCGGCAGAGGCCGTGGAAGGGGCCGCGGTGCCCGGGGCGGCAAGTCCGAGGACAAGGAATGGGTTCCAGTCACCAAGCTGGGTCGCCTGGTTAAGGACATGAAGATCAAGACTCTAGAGGAGATCTATCTGTACTCTCTGCCCATCAAGGAGTCTGAGATCATTGACTTCTTCCTGGGATCTGGTCTGAAGGATGAGGTGCTCAAGATCATGCCTGTCCAGAAACAGACCCGGGCTGGTCAGCGCACCAGGTTCAAGGCCTTTGTTGCCATTGGCGACTACAATGGTCACGTGGGTCTGGGAGTGAAGTGCTCCAAAGAGGTGGCCACCGCCAT CCGTGGGGCGATCATCCTTGCCAAGCTGTCCATTGTCCCCGTCAGGAGAGGTTATTGGGGAAACAAGATCGGTAAGCCCCACACCGTACCCTGCAAGGTGACGGGCCGCTGCGGCTC GGTCCTGGTGCGTCTCATCCCGGCACCCCGTGGTACTGGAATCGTGTCGGCTCCCGTGCCCAAGAAGCTGCTCATGATGGCCGGT ]
[+] EMBL CA340927 [ tttGGCTTTCGCGGAGGTTTTGGCGCAGGTGGACGCGGTCGGGGCCGC GGACGCGGCAGAGGCCGTGGAAGGGGCCGCGGTGCCCGGGGCGGCAAGTCCGAGGACAAGGAATGGGTTCCAGTCACCAAGCTGGGTCGCCTGGTTAAGGACATGAAGATCAAGACTCTAGAGGAGATCTATCTGTACTCTCTGCCCATCAAGGAGTCTGAGATCATTGACTTCTTCCTGGGATCTGGTCTGAAGGATGAGGTGCTCAAGATCATGCCTGTCCAGAAACAGACCCGGGCTGGTCAGCGCACCAGGTTCAAGGCCTTTGTTGCCATTGGCGACTACAATGGTCACGTGGGTCTGGGAGTGAAGTGCTCCAAAGAGGTGGCCACCGCCAT CCGTGGGGCGATCATCCTTGCCAAGCTGTCCATTGTCCCCGTCAGGAGAGGTTATTGGGGAAACAAGATCGGTAAGCCCCACACCGTACCCTGCAAGGTGACGGGCCGCTGCGGCTC GGTCCTGGTGCGTCTCATCCCGGCACCCCGTGGTACTGGAATCGTGTCGGCTCCCGTGCCC ]
[+] EMBL FR0055439 [ GGCTTTCGCGGGGGTTTTGGCGCAGGTGGCCGCGGTCGTGGCCGC GGACGCTGTAGAGGCCGTGTTAGGGGACGCGGTGCCCGGCGCGGCAGGTCCGAGGACAAGGAATGTGTTCCAGTCACCAAGCTGGGTCGCCTGGTTAAGGACATGAAGATCAAGACTCTAGAGGAGATCTAGCTGTACTCTCTGCCCATCATGGAGTCTGAGATCATTGACTTCTTCCTGCGATCTGCTCTGAAGGATGAGGTGCTCAAGATCATGCCTGTCCAGAAGCAGTCCCGGGCTGGTCAGCGCACCAGGTTCAAGGCCTTTGTTGCCATTGACGACTACAA ]
[+] EMBL FR0055463 [ CCTTCCCGGGGGATTTGGCGCAGGTGGACGCGGTCGGGGCCGCGGGACGCTGTAGAGGCCGTGGTAGGGGACGCGGTGCCCGGCGCGGCAAGTCCGACGACAAGGAATGGGTTCCAGTCACCAAGCTGGGTCGCCTGGTTAAGGACATGAAGATCAAGACTCTAGAGGAGATCTATCTGTACTCTCTGCCCATCAAGGAGTCTGAGATCATTGACTTCTTCCTGGGATCTGGTCTGAAGGATGAGGTGCTCAAGATCATGCCTGTCCAGAAACAGACCCGGGCTGGTCAGCGCACCAGGTTCAAGGCCTTTGTTGCCATTGGCGACTACAATGGTCACGTGGGTCTGGGAGTGAAGTGCTCCAAAGAGGTGGGCACCGCCATCCCGTGGGGCGATCATCCTTGCCAAGCTGTCCATTGTCCCCGTCAGGACAGGTTATTGGGGA ]
[+] EMBL FR0058346 [ CGCAGGTGGACGCGGTCGGGGCCGC GGACGCGGGAGATGCCGTGGAAGGAGCCGCGGTGCCCGGGGCGGCAAGTCCGAGGACAAGGAATGGTTTCCAGTCACCAAGCTGGGTCGCCTGGTTAAGGACATGAAGATCAAGACTCTAGAGGAGATCTATCTGTACTCTCTGCCCATCAAGGAGTCTGAGATCATTGACTTCTTCCTGGGATCTGGTCTGAAGGATGAGGGGCTCAAGAACATGCCTGTCCAGAAACAGACCCGG ]
[+] EMBL FR0055398 [ aCAGGTGGACGCGGTCGGGGCCGC GGACGCGGAAGAGGCCGTGGAAGGGGCCGCGGTGCCCGGGGCGGCAAGTCCGAGGACAAGGAATGGGTTCCAGTCACCAAGCTGGGTCGCCTGGTTAAGGACATGAAGATCAAGACTCTAGAGGAGATCTATCTGTACTCTCTGCCCATCAAGGAGTCTGAGATCATTGACTTCTTCCTGGGATCTGGTCTGAAGGATGAGGTGCTCAAGATCATGCCTGTCCAGAAACAGACCCGGGCTGGTCAGCGCACCAGGTTCAAGGCCTTTGTTGCCATTGGCGACTACAATGGTCACGTGGGTCTGGGAGTGAAGTGCTCCAAAGAGGTGGCCACCGGCAT CCGTGGGGCTATCATCCTTGCCAAGCTGTCCATTGTCACCGTCATGAGAGGGTACTGGGGAAACAAGATCGGTGGGCGCCATACCGT ]
[+] EMBL FR0061812 [ GTGGACGCGAGCGGGGCCGC GGACGCGGGAGAGGCCGTGGAAGGGGCCGCGGTGCCCGCGGCGGCAAGTCCGAGGACAAGGAATGGGTTCCAGTCACCAAGCTGGGTCGCCTGGTTAAGGACATGAAGATCAAGACTCTAGAGGAGATCTATCTGTACTCTCTGCCCATCAAGGAGTCTGAGATCATTGACTTCTTCCTGGGATCTGGTCTGAAGGATGAGGTGCTCAAGATCATGCCTGTCCAGAAACAGACCCGGGCTGTTCAGCGCACCAGGTTCAAGGCCTTTGTTGCCATTGGCGACTACAATGGTCACGTGGGTCTGGGAGTGAAGTGCTCCAAAGA ]
[+] EMBL FR0055575 [ AAGTTGGGTCGCTTGGTTAAGGACATGAAGATCAGGACTCAAGAGGAGATCTATCTGTACTCTCTGCCCATCAAGGAGTCTGAGATCATTGACTTCTTCCTGGGATCTGGTCTGAAGGATGAGGTGCTCAAGATCATGCCTGTCCAGAAACAGACCCGGGCTGGTCAGCGCACCAGGTTCAAGGCCTTTGTTGCCATTGGCGACTACAATGGTCACGTGGGTCTGGGAGTGAAGTGCTCCAAAGAGGTGGACACCGCCAT CCGTGGGGCGATCATCCTTGCCAAGCTGTCCATTGTCCCCGTCAGGAGAGGTTATTGGGGAAACAAGATCGGTAAGCCCCACACCGTTACCTGCAAGGTGACCGGCCGCTGCGGCTC GGTCCTGGTGC ]
[+] EMBL FR0056820 [ CCCATCAAGGAGTCTGAGATCATTGACTTCTTCCTGGGATCTGGTCTGAAGGATGAGGTGCTCAAGATCATGCCTGTCCAGAAACAGACCCGGGCTGGTCAGCGCACCAGGTTCAAGGCCTTTGTTGCCATTGGCGACTACAATGGTCACGTGGGTCTGGGAGTGAAGTGCTCCAAAGAGGTGGCCACCGCCAT CCGTGGGGCGATCATCCTTGCCAAGCTGTCCATTGTCCCCGTCAGGAGAGGTTATTGGGGAAACAAGATCGGTAAGCCCCACACCGTACCCTGCAAGGTGACGGGCCGCTGCGGCTCGGGTCCTGGTGCGTCTCATCCCGGCACCCCGTGGTACTGGGATCGTGTCGGGTCACGTGCCCAAGAAGCTGCTCATGATGGGCGGTATTGATGACTGCGACACCTCCGCC ]
[+] EMBL FR0056679 [ GCGCACCAGGTTCAAGGCCTTTGTTGCCATTGGCGACTACAATGGTCACGTGGGTCTGGGAGTGAAGTGCTCCAAAGAGGTGGCCACCGCCAT CCGTGGGGCGATCATCCTTGCCAAGCTGTCCATTGTCCCCGTCAGGAGAGGTTATTGGGGAAACAAGATCGGTAAGCCCCACACCGTACCCTGCAAGGTGACGGGCCGCTGCGGCTC GGTCCTGGTGCGTCTCATCCCGGCACCCCGTGGTACTGGAATCGTGTCGGCTCCCGTGCCCAAGAAGCTGCTCATGATGGCCGGTATTGATGACTGCTACACCTCCGCCCGAGGCTGCACAGCCACCCTTGGAAACTTCGCCAAGGCCACCTTTGACGCCATCTCAAAGACGTACAGCTACTTGACCCCTGACCTGTGGAAGGAGACAGTCTTCACCAAGTCTC ]
[+] EMBL CA845299 [ CAATGGTCACGTGGGTCTGGGAGTGAAGTGCTCCAAAGAGGTGGCCACCGCCAT CCGTGGGGCGATCATCCTTGCCAAGCTGTCCATTGTCCCCGTCAGGAGAGGTTATTGGGGAAACAAGATCGGTAAGCCCCACACCGTACCCTGCAAGGTGACGGGCCGCTGCGGCTC GGTCCTGGTGCGTCTCATCCCGGCACCCCGTGGTACTGGAATCGTGTCGGCTCCCGTGCCCAAGAAGCTGCTCATGATGGCCGGTATTGATGACTGCTACACCTCCGCCCGAGGCTGCACAGCCACCCTTGGAAACTTTGCCAAGGCCACCTTTGACGCCATCTCAAAGACGTACAGCTACTTGACCCCTGACCTGTGGAAGGAGACCGTCTTCACCAAGTCTCCCTACCAGGAGTTCACGGACCATCTGGCCAA GACTCACACCAGGGTGTCTGTGCAGAGGGGACAGACCATGCAGGCACCCGCCTCATAAACACCGTTGAGAACGGCTGAA ]
[+] EMBL FR0056429 [ TGCCAAGCTGTCCATTGTCCCCGTCAGGAGAGGTTATTGGGGAAACAAGATCGGTAAGCCCCACACCGTACCCTGCAAGGTGACGGGCCGCTGCGGCTC GGTCCTGGTGCGTCTCATCCCGGCACCCCGTGGTACTGGAATCGTGTCGGCTCCCGTGCCCAAGAAGCTGCTCATGATGGCCGGTATTGATGACTGCTACACCTCCGCCCGAGGCTGCACAGCCACCCTTGGAAACTTTGCCAAGGCCACCTTTGACGCCATCTCAAAGACGTACAGCTACTTGACCCCTGACCTGTGGAAGGAGACCGTCTTCACCAAGTCTCCCTACCAGGAGTTCACGGACCATCTGGCCAAGGACTCACACCAGGGTGTCTGTGCAGA ]
[+] EMBL FR0056484 [ CAAGCTGTCCATTGTCCCCGTCAGGAGAGGTTATTGGGGAAACAAGATCGGTAAGCCCCACACCGTACCCTGCAAGGTGACGGGCCGCTGCGGCTC GGTCCTGGTGCGTCTCATCCCGGCACCCCGTGGTACTGGAATCGTGTCGGCTCCCGTGCCCAAGAAGCTGCTCATGATGGCCGGTATTGATGACTGCTACACCTCCGCCCGAGGCTGCACAGCCACCCTTGGCAACTTTGCCAAGGCCACCTTTGACGCCATCTCAAAGACGTACAGCTACTTGACCCCTGACCTGTGGAAGGAGACCGTCT ]
[+] EMBL CA330563 [ GCGTCTCATCCCGGCACCCCGTGGTACTGGAATCGTGTCGGCTCCCGTGCCCAAGAAGCTGCTCATGATGGCCGGTATTGATGACTGCTACACCTCCGCCCGAGGCTGCACAGCCACCCTTGGAAACTTTGCCAAGGCCACCTTTGACGCCATCTCAAAGACGTACAGCTACTTGACCCCTGACCTGTGGAAGGAGACCGTCTTCACCAAGTCTCCCTACCAGGAGTTCACGGACCATCTGGCCAA GACTCACACCAGGGTGTCTGTGCAGAGGGGACAGACCATGCAGGCACCCGCCTCATAAACACCGTTGAGAACGGCTGAATAAAATCCTGAAAA]
[+] EMBL CA846782 [ GCTCCCGTGCCCAAGAAGCTGCTCATGATGGCCGGTATTGATGACTGCTACACCTCCGCCCGAGGCTGCACAGCCACCCTTGGAAACTTTGCCAAGGCCACCTTTGACGCCATCTCAAAGACGTACAGCTACTTGACCCCTGACCTGTGGAAGGAGACCGTCTTCACCAAGTCTCCCTACCAGGAGTTCACGGACCATCTGGCCAA GACTCACACCAGGGTGTCTGTGCAGAGGGGACAGACCATGCAGGCACCCGCCTCATAAACACCGTTGAGAACGGCTGAATAAAATCCTGAAAA]
[+] EMBL CA330475 [ CACAGCCACCCTTGGAAACTTTGCCAAGGCCACCTTTGACGCCATCTCAAAGACGTACAGCTACTTGACCCCTGACCTGTGGAAGGAGACCGTCTTCACCAAGTCTCCCTACCAGGAGTTCACGGACCATCTGGCCAA GACTCACACCAGGGTGTCTGTGCAGAGGGGACAGACCATGCAGGCACCCGCCTCATAAACACCGTTGAGAACGGCTGAATAAAATCCTGAAA ]
[+] EMBL CA330845 [ GACTCACACCAGGGTGTCTGTGCAGAGGGGACAGACCATGCAGGCACCCGCCTCATAAACACCGTTGAGAACGGCTGAATAAAATCCTGAAA ]
consensusID : consensus_2773#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 201 fasta sequence
[GCCCGCGTGCCCGCTGCTGGAAGTCCGAACACAATTAATGCCTTCCATTCACCAAGCTGGGTCGCCTGGTTAAGGACATGAAGATCAAGACTCTAGAGGAGATCTATCTTGGTCTCTCTGCCCATCAAGGAGTCTGACATCATTGACTTCTTCCTTGGATCTGGCCTGAAGGATGAGGTGCTCAAGATCATGCCTGTCCAA]
[+] EMBL FR0061102 [GCCCGCGTGCCCGCTGCTGGAAGTCCGAACACAATTAATGCCTTCCATTCACCAAGCTGGGTCGCCTGGTTAAGGACATGAAGATCAAGACTCTAGAGGAGATCTATCTTGGTCTCTCTGCCCATCAAGGAGTCTGACATCATTGACTTCTTCCTTGGATCTGGCCTGAAGGATGAGGTGCTCAAGATCATGCCTGTCCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2773#0 GACGCCGGTGGTAGGGGAGGCTTTCGCGGAGGTTTTGGCGCAGGTGGACGCGGTCGGGGC 60
consensus_2773#1 ------------------------------------------------------------
consensus_2773#0 CGCGGACGCGGCAGAGGCCGTGGAAGGGGCCGCGGTGCCCGGGGCGGCAAGTCCGAGGAC 120
consensus_2773#1 ---------------------------GCCCGCG-TGCCCGCTGCTGGAAGTCCGAACAC 32
* ***** ****** ** * ******** **
consensus_2773#0 AAGGAATGGGTTCCAGTCACCAAGCTGGGTCGCCTGGTTAAGGACATGAAGATCAAGACT 180
consensus_2773#1 AATTAATGCCTTCCATTCACCAAGCTGGGTCGCCTGGTTAAGGACATGAAGATCAAGACT 92
** **** ***** ********************************************
consensus_2773#0 CTAGAGGAGATCTATCT-GTACTCTCTGCCCATCAAGGAGTCTGAGATCATTGACTTCTT 239
consensus_2773#1 CTAGAGGAGATCTATCTTGGTCTCTCTGCCCATCAAGGAGTCTGACATCATTGACTTCTT 152
***************** * ************************ **************
consensus_2773#0 CCTGGGATCTGGTCTGAAGGATGAGGTGCTCAAGATCATGCCTGTCCAGAAACAGACCCG 299
consensus_2773#1 CCTTGGATCTGGCCTGAAGGATGAGGTGCTCAAGATCATGCCTGTCCAA----------- 201
*** ******** ***********************************
consensus_2773#0 GGCTGGTCAGCGCACCAGGTTCAAGGCCTTTGTTGCCATTGGCGACTACAATGGTCACGT 359
consensus_2773#1 ------------------------------------------------------------
consensus_2773#0 GGGTCTGGGAGTGAAGTGCTCCAAAGAGGTGGCCACCGCCATCCGTGGGGCGATCATCCT 419
consensus_2773#1 ------------------------------------------------------------
consensus_2773#0 TGCCAAGCTGTCCATTGTCCCCGTCAGGAGAGGTTATTGGGGAAACAAGATCGGTAAGCC 479
consensus_2773#1 ------------------------------------------------------------
consensus_2773#0 CCACACCGTACCCTGCAAGGTGACGGGCCGCTGCGGCTCGGTCCTGGTGCGTCTCATCCC 539
consensus_2773#1 ------------------------------------------------------------
consensus_2773#0 GGCACCCCGTGGTACTGGAATCGTGTCGGCTCCCGTGCCCAAGAAGCTGCTCATGATGGC 599
consensus_2773#1 ------------------------------------------------------------
consensus_2773#0 CGGTATTGATGACTGCTACACCTCCGCCCGAGGCTGCACAGCCACCCTTGGAAACTTTGC 659
consensus_2773#1 ------------------------------------------------------------
consensus_2773#0 CAAGGCCACCTTTGACGCCATCTCAAAGACGTACAGCTACTTGACCCCTGACCTGTGGAA 719
consensus_2773#1 ------------------------------------------------------------
consensus_2773#0 GGAGACCGTCTTCACCAAGTCTCCCTACCAGGAGTTCACGGACCATCTGGCCAAGACTCA 779
consensus_2773#1 ------------------------------------------------------------
consensus_2773#0 CACCAGGGTGTCTGTGCAGAGGGGACAGACCATGCAGGCACCCGCCTCATAAACACCGTT 839
consensus_2773#1 ------------------------------------------------------------
consensus_2773#0 GAGAACGGCTGAATAAAATCCTGAAAA 866
consensus_2773#1 ---------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |