These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2775#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 523 fasta sequence [AATTCGGCACGAG---AGGCGAAGAAGGAAGTGGTCCCTGTCAAGACTGAAGCCAAGTCAAAGGCTCTGAAGGCCAAAAAGGCCGTGCTCAAGGGTGTACACAGCCAGAGGAGGAAGAAGATCAGGACTTCTCCAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCCCTGACTACAGAGTCTGCCATGAAGAAGATAGAGGATAATAACACACTTGTGTTCATCGTGGACGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGATGTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTCGTCTGGCACCAGATTACGAT-GCATTGGATGTTGCAAACAAGATTGGCATCATCTAAACTGGCAGAAAGGGCTTGAATAAATATTTGTATTGACTAAAAAGAAAAGAAA] [-] EMBL CA588807 [AATTCGGCACGAGCGAAGGCGAAGAAGGAAGTGGTCCCTGTCAAGACTGAAGCCAAGTCAAAGGCTCTGAAGGCCAAAAAGGCCGTGCTCAAGGGTGTACACAGCCAGAGGAGGAAGAAGATCAGGACTTCTCCAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCCCTGACTACAGAGTCTGCCATGAAGAAGATAGAGGATAATAACACACTTGTGTTCATCGTGGACGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGATGTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTC ] [+] EMBL CA340947 [ GCACGAG AGGCGAAGAAGGAAGTGGTTTCTGCCAAGACTGAAGCCAAGTCAAAGGCTCTGAAGGCCAAAAAGGCCGTGCTCAAGGGTGTACACAGCCAGAGGAGGAAGAAGATCAGGACTTCTCCAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCCCTGACTACAGAGTCTGCCATGAAGAAGATAGAGGATAATAACACACTTGTGTTCATCGTGGACGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGATGTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTCGTCTGGCACCAGATTACGAT GCATTGGATGTTGCAAACAAGATTGGCATCATCTAAACTGGCAGAAAGGGCTTGAATAAAT ] [+] EMBL CA330189 [ AAGGAAGTGGTCCCTGTCAAGACTGAAGCCAAGTCAAAGGCTCTGAAGGCCAAAAAGGCCGTGCTCAAGGGTGTACACAGCCAGAGGAGGAAGAAGATCAGGACTTCTCCAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCCCTGACTACAGAGTCTGCCATGAAGAAGATAGAGGATAATAACACACTTGTGTTCATCGTGGACGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGATGTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTCGTCTGGCACCAGATTACGAT GCATTGGATGTTGCAAACAAGATTGGCATCATCTAAACTGGCAGAAAGGGCTTGAATAAATATTTGTATTGA ] [+] EMBL CA330401 [ GAAGTGGTCCCTGTCAAGACTGAAGCCAAGTCAAAGGCTCTGAAGGCCAAAAAGGCCGTGCTCAAGGGTGTACACAGCCAGAGGAGGAAGAAGATCAGGACTTCTCCAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCCCTGACTACAGAGTCTGCCATGAATAATATAGAGGATAATAACACACTTGTGTTCATCGTGGACGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGATGTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTCGTCTGGCACCAGATTACGAT GCATTGGATGTTGCAAACAAGATTGGCATCATCTAAACTGG ] [+] EMBL FR0058008 [ AGTGGTCCCTGTCAAGACTGAAGCCAAGTCAAAGGCTCTGAAGGCCAAAAAGGCCGTGCTCAAGGGTGTACACAGCCAGAGGAGGAAGAAGATCAGGACTTCTCCAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCCCTGACTACAGAGTCTGCCATGAAGAAGATAGAGGATAATAACACACTTGTGTTCATCGTGGATGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGATGTTGCCAAAGTCAACACT ] [+] EMBL FR0057277 [ TGGTCCCTGTCAAGACTGAAGCCAAGTCAAAGGCTCTGAAGGCCAAAAAGGCCGTGCTCAAGGGTGTACACAGCCAGAGGAGGAAGAAGATCAGGACTTCTCCAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTAGCCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCCCTGACTACAGAGTCTGCCATGAAGAAGATAGAGGATAATAACACACTTGTGTTCATCGTGGATGTCAAGGCAGACATACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGAGGTTGCCAAAGTCAACACTCTAATCAGGCCTGACGGTGAAAACATAGGGTATGGTTCGCTGGCACCAGATTACGAT GCATTGGGT ] [+] EMBL CA341125 [ CCCTGTCAAGACTGAAGCCAAGTCAAAGGCTCTGAAGGCCAAAAAGGCCGTGCTCAAGGGTGTACACAGCCAGAGGAGGAAGAAGATCAGGACTTCTCCAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCCCTGACTACAGAGTCTGCCATGAAGAAGATAGAGGATAATAACACACTTGTGTTCATCGTGGACGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGATGTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTCGTCTGGCACCAGATTACGAT GCATTGGATGTTGCAAACAAGATTGGCATCATCTAAACTGGCAGAAAGGGCTTGAATAAATATTTGTATT ] [+] EMBL FR0056892 [ CAAGTCAAAGGCTCTGAAGGCCAAAAAGGCCGTGCTCAAGGGTGTACACAGCCAGAGGAGGAAGAAGATCAGGACTTCTCCAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCCCTGACTACAGAGTCTGCCATGAAGAAGATAGAGGATAATAACACACTTGTGTTCATCGTGGACGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGATGTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTCGTCTGGCACCAGATTACGAT GCATTGGATGTTGCANACAAGATTGGCATCATCTAAACTGGCAGAA ] [+] EMBL FR0055209 [ AGTCAAAGGCTCTGAAGGCCAAAAAGGCCGTGCTCAAGGGTGTACACAGCCAGAGGAGGAAGAAGATCAGGACTTCTCCAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCCTTGACTACAGAGTCTGCCATGAAGAAGATAGAGGATAATAACACACTTGTGTTCATCGTGGACGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGATGTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTCGTCTGGCACCAGATTACGAT GCATTGGATGTTGCAAACAAGATTGGCATCATCTAAACTGGCAGAAAGGGCTTGAATAAATATTTGTATTGACTAAACCGCAAAGAAA] [+] EMBL FR0056685 [ GGCTCTGAAGGCCAAAAAGGCCGTGCTCAAGGGTGTACACAGCCAGAGGAGGAAGAAGATCAGGACTTCTCCAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCCCTGACTACAGAGTCTGCCATGAAGAAGATAGAGGATAATAACACACTTGTGTTCATCGTGGACGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGATGTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTCGTCTGGCACCAGATTACGAT GCATTGGATGTTGCAAACAAGATTGGCATCATCTAGACTGGCAGAAAGGG ] [+] EMBL FR0055819 [ GGCTCTGAAGGCCAAAAGGGCCGTGCTCAAGGGTGTACACAGCCAGAGGAGGAAGAAGATCAGGACTTCTCCAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCCCTGACTACAGAGTCTGCCATGAAGAAGATAGAGGATAATAACACACTTGTGTTCATCGTGGACGTCAAGGCAAACAGACACCAGATCAAGCACGCTGTCAAGAAGCTGTAGGACATTGATGTTGCCAAAGTCAGCACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTCGTCTGGGAACAGATTACGATGGCATTGGAT ] [+] EMBL FR0057015 [ GGCCAAAAAGGCCGTGCTCAAGGGTGTACACAGCCAGAGGAGGAAGAAGATCAGGACTTCTCCAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCCCTGACTACAGAGTCTGCCATGAAGAAGATAGAGGATAATAACACACTTGTGTTCATCGTGGACGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGATGTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTCGTCTGGCACCAGATTACGAT GCATTGGATGTTGCAAACAAGAT ] [+] EMBL CA340965 [ GCCAAAAAGGCCGTGCTCAAGGGTGTACACAGCCAGAGGAGGAAGAAGATCAGGACTTCTCCAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCCCTGACTACAGAGTCTGCCATGAAGAAGATAGAGGATAATAACACACTTGTGTTCATCGTGGATGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGATGTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTCGTCTGGCACCAGATTACGAT GCATTGGATGTTGCAAACAAGATTGGCATCATCTAAACTGGCAGAAAGGGCTTGAATAAATAT ] [+] EMBL CA844854 [ GTGTACACAGCCAGGGGAGGAAGAAGATCAGGACTTCTCCAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCCCTGACTACAGAGTCTGCCATGAAGAAGATAGAGGTCAATAATTCACTTGTGTTCATCGTGGACGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGATGTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGCATGTTCGTCTGGTACCAGATTACGAT GCATTGGATGTTGCCAAC ] [+] EMBL CA330659 [ CAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCCCTGACTACAGAGTCTGCCATGAAGAAGATAGAGGATAATAACACACTTGTGTTCATCGTGGACGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGATGTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTCGTCTGGCACCAGATTACGAT GCATTGGATGTTGCAAACAAGATTGGCATCATCTAAACTGGCAGAAAGGGCTTGAATAAATATTTGTATT ] [+] EMBL CA330541 [ AAGTTGGATCACTATGCTATCATCAAGTTCCCCCTGACTACAGAGTCTGCCATGAAGAAGATAGAGGATAATAACACACTTGTGTTCATCGTGGATGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGATGTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTCGTCTGGCACCAGATTACGAT GCATTGGATGTTGCAAACAAGATTGGCATCATCTAAACTGGCAGAAAGGGCTTGAATAAATATTTGTATT ] [+] EMBL FR0056826 [ TAACACACTTGTGTTCATCGTGGACGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGATGTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTCGTCTGGCACCAGATTACGAT GCATTGGATGTTGCAAACAAGATTGGCATCATCTAAACTGGCAGAAAGGGCTTGAATAAATATTTGTATTGACTAAAAAAA ] [+] EMBL CA330365 [ AGCTGTATGACATTGATGTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTCGTCTGGCACCAGATTACGAT GCATTGGATGTTGCAAACAAGATTGGCATCATCTAAACTGGCAGAAAGGGCTTGAATAAATATTTGTATTG ] consensusID : consensus_2775#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence [NCAAGGGCGCACACAGCCAGAGGAGGAAGAAGANCAGGACTTCTCCCCCCCAAAAGGGCNCCCAAACTCTGCGNCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCCCCCCGGAGGAACAAGTCGGACCACTATGCTATCAACAAGGCCCCCCAGACGACAGAGCCCGCCATGAAGAAGATAGAGGATAATAACCCACTTGAGATCACCGTGGATGTCAAGGCAAACAAACACCAGATCAAGCACGCTGACAAGAAGCTGTATGACATTGATGTTGCCAAAGCCAACACTCCCAACAGACCAGACGGGGAAAAGAAGGCGCAAGGTCCTCTGGCCCCCCACAACGAAGCCCCGGACGAA] [+] EMBL CA846413 [NCAAGGGCGCACACAGCCAGAGGAGGAAGAAGANCAGGACTTCTCCCCCCCAAAAGGGCNCCCAAACTCTGCGNCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCCCCCCGGAGGAACAAGTCGGACCACTATGCTATCAACAAGGCCCCCCAGACGACAGAGCCCGCCATGAAGAAGATAGAGGATAATAACCCACTTGAGATCACCGTGGATGTCAAGGCAAACAAACACCAGATCAAGCACGCTGACAAGAAGCTGTATGACATTGATGTTGCCAAAGCCAACACTCCCAACAGACCAGACGGGGAAAAGAAGGCGCAAGGTCCTCTGGCCCCCCACAACGAAGCCCCGGACGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2775#0 AATTCGGCACGAGAGGCGAAGAAGGAAGTGGTCCCTGTCAAGACTGAAGCCAAGTCAAAG 60 consensus_2775#1 ------------------------------------------------------------ consensus_2775#0 GCTCTGAAGGCCAAAAAGGCCGTGCTCAAGGGTGTACACAGCCAGAGGAGGAAGAAGATC 120 consensus_2775#1 -------------------------NCAAGGGCGCACACAGCCAGAGGAGGAAGAAGANC 35 ****** * *********************** * consensus_2775#0 AGGACTTCTCCAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTAC 180 consensus_2775#1 AGGACTTCTCCCCCCCAAAAGGGCNCCCAAACTCTGCGNCTCCGCAGGCAGCCCAAGTAC 95 *********** ** ** ** ********** ********************* consensus_2775#0 CCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCC 240 consensus_2775#1 CCTCGCAAAAGTGCCCCCCGGAGGAACAAGTCGGACCACTATGCTATCAACAAGGCCCCC 155 ************** ***** ********** *** ************* **** **** consensus_2775#0 CTGACTACAGAGTCTGCCATGAAGAAGATAGAGGATAATAACACACTTGTGTTCATCGTG 300 consensus_2775#1 CAGACGACAGAGCCCGCCATGAAGAAGATAGAGGATAATAACCCACTTGAGATCACCGTG 215 * *** ****** * *************************** ****** * *** **** consensus_2775#0 GACGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGAT 360 consensus_2775#1 GATGTCAAGGCAAACAAACACCAGATCAAGCACGCTGACAAGAAGCTGTATGACATTGAT 275 ** ********************************** ********************** consensus_2775#0 GTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTCGTCTG 420 consensus_2775#1 GTTGCCAAAGCCAACACTCCCAACAGACCAGACGGGGAAAAGAAGGCGCAAGGTCCTCTG 335 ********** ******** * ****** ***** ************ * * ** **** consensus_2775#0 GCACCAGATTACGATGCATTGGATGTTGCAAACAAGATTGGCATCATCTAAACTGGCAGA 480 consensus_2775#1 GCCCCCCACAACGAAGCCCCGGACGAA--------------------------------- 362 ** ** * **** ** *** * consensus_2775#0 AAGGGCTTGAATAAATATTTGTATTGACTAAAAAGAAAAGAAA 523 consensus_2775#1 ------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |