cluster # 2798

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Takifugu rubripes
cluster # 2798 cluster # 2798 Sequences # 21 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2798#0 length = 381 sequences # 4

consensus_2798#1 length = 322 sequences # 16
consensus_2798#2 length = 161 sequences # 1

consensusID : consensus_2798#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 381
fasta sequence

                              [AATTCGGCACGAG-------GACAAGATGGGCCATCAGCAGCTCTATTGGAGTCACCCTAGAAAGTTCGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACAGACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAATCTACATGGAATAATTCAGC-ACTGCAAATAAATTGTTTTTTGTCCAAACTTAAAAAAAAAAAAAAAGAAAAGAAAAAAAAAAGAAAAATAAAAAAAAAATAGAAAAACCCCCCGGGGGGGGCCCCCAACCACTTTTTT]

[-] EMBL CA588767             [AATTCGGCACGAG       GACAAGATGGGCCATCAGCAGCTCTATTGGAGTCACCCTAGAAAGTTCGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACAGACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAAGGAAGTCCTGAATGCCAATCTACATGGAATAATTCACCTACAGCGAATAAA                                                                                                          ]
[-] EMBL CA588707             [AATTCGGCACGAGCGAACGAGACAAGATGGGCCATCAGCAGCTCTATTGGAGTCACCCTAGAAAGTTCGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACAGACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGT                                                                                                                                                       ]
[+] EMBL CA330590             [                             GGCCATCAGCAGCTCTATTGGAGTCACCCTAGAAAGTTCGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACAGACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAATCTACATGGAATATTTCTTC ACTGCAAATAAATTGTTTTTT                                                                                                 ]
[+] EMBL FR0055188            [                                                          TAGAAAGTTCGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACAGACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAATCTACATGGAATAATTCAGC ACTGCAAATAAATTGTTTTTTGTCCAAACTTAAAAAAAAAAAAAAAGAAAAGAAAAAAAAAAGAAAAATAAAAAAAAAATAGAAAAACCCCCCGGGGGGGGCCCCCAACCACTTTTTT]




>consensus_2798#0
AATTCGGCACGAGGACAAGATGGGCCATCAGCAGCTCTATTGGAGTCACCCTAGAAAGTT
CGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACAGACACGGACTGATCCGCAAATA
CGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAA
GCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGC
CAATCTACATGGAATAATTCAGCACTGCAAATAAATTGTTTTTTGTCCAAACTTAAAAAA
AAAAAAAAAGAAAAGAAAAAAAAAAGAAAAATAAAAAAAAAATAGAAAAACCCCCCGGGG
GGGGCCCCCAACCACTTTTTT

consensusID : consensus_2798#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 16
consensus length = 322
fasta sequence

                              [CCATCAGCAGCTCTATTGGAGTCACCCTAGAAAGTTCGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACA-GACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAAT-CTACATGGAATAATTCAGCACT--GCAAATAAATTGTTTTTTGTCCAAACTT---------AAAAAA-----AAAAAAAAAAAA--CC-CGGGGGGGGGCCCGGTACCCAGTTTTTGGCCC]

[+] EMBL FR0056959            [CCATCAGCAGCTCTATTGGAGTCACCCTAGAAAGTTCGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACA GACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACCGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAAT CTACATGGAATAATTCAGCACT  GCAAATAAATTGTTTTTTGTCCAAACTT         AAAAAA     AAAAAAAAAAAA  CCTCGAGGGGGGGCCCGGTACCAAGCTTTTGGC  ]
[+] EMBL FR0055558            [ CATCAGCAGCTCTATTGGAGTCACCCTAGAAAGTTCGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACA GACACGGGCTGATCCGCAAATACGGGCTGAGCATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGCGATGGATCCAGTGAAGTCCTGAGTGCCAAT CTACATGGAATAATTCAGCACT  GCACATAAATTGTTTTTTGTCCAAACTT         ACATGA     AATAAATCAGCA  CT CGAGGGGGGGCCCGGTACCCAGATTTT     ]
[+] EMBL CA844723             [ CATCAGCAGCTCTATTGGAGTCACCCTAGAAAGTTCCGTCAGGGATCCCGATCCTGCCGGGTATGCTCAAACA GACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAAT CTACATGGAATAATTCAGCACT  GCAAATAAATTGTTTTTTGTCCAAACTT         A                                                           ]
[+] EMBL CA847003             [          CTCTATTGGAGTCACCCTAGAAAGTTCGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACA GACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACCGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAAT CTACATGGAATAATTCAGCACT  GCAAATAAATTGTTTTTT                                                                               ]
[+] EMBL FR0056424            [                     TCACCCTAGAAAGTTCGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACA GACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAAT CTACATGGAATAATTCAGCACT  GCAAATAAATTGTTTTTTGTCCAAAAAA         AAAAAA     AAAAAAAAAAAAACCC CCGGGGGGGCCCCGGAACCCAATTTTTTGCC ]
[+] EMBL CA330553             [                      CACCCTAGAAAGTTCGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACA GACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAAT CTACATGGAATAATTCAGCACT  GCAAATAAATTGTTTTTTGTCCAAACT                                                                      ]
[+] EMBL CA845489             [                      CACCCTAGAAAGTTCGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACA GACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACCGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAAT CTACATGGAATAATTCAGCACT  GCAAATAAATTGTTTTTTGTCCAAA                                                                        ]
[+] EMBL FR0056055            [                        CCCTAGAAAGTTCGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACA GACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAAT CTACATGGAATAATTCAGCACT  GCAAATAAATTGTTTTTTGTCC               AAAAAA     AAAAAAAAAAAC  CC CGAGGGGGGCCCGGGTACCAAGTTTTGGTCCC]
[+] EMBL FR0056034            [                          CTAGAACGTTCGGTCAGGGATCCCGATCCTGCCGGATATGCTCACACATGACACGGACTGATCCGCAATTCCGGGCTGAGCATGTGCCGCCAGTGCTTCAGGCAGTACGCTTTAGGCATCGGCATCGTTAAGCTGGTCTGAACACTTTGGGCTGTCATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAAT CTACATGGAATAATTCAGCACT  GCAAATAAATTGGTTTTTGTCCAAACTT         AACAAA     AAGGAAAAAAAC  CC CGGGGGGGGCCCGGGCACCAAGTTTTGGTCC ]
[+] EMBL CA330482             [                             GAAAGTTCGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACA GACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAAT CTACATGGAATAATTCAGCACT  GCAAATAAATTGTTTTTTGTCCAA                                                                         ]
[+] EMBL FR0056028            [                               AAGTTCGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACA GACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAAT CTACATGGAATAATTCAGCACT  GCAAATAAATTGTTTTTTGTCCAAACTT         AAAAAAAAAACAAAAAAAAAAAA  CC CCGGGGGGGGCCCGGTTACCAATTTTTG    ]
[+] EMBL FR0056888            [                                 GTTCGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACA GACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAAT CTACATGGAATAATTCAGCACT  GCAAATAAATTGTTTTTTGTCCAAACTT         AAAAAA     AAAAAAAAAAAC  CT CGAGGGGGGGCCCGGTACCCAGCTTTTG    ]
[+] EMBL FR0056536            [                                          GGGATCCCGATCCTGCCGGGTATGCTCAAACA GACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAATCCTACATGGAATAATTCAGCACT  GCAAATAAATTGT                                                                                    ]
[+] EMBL FR0056687            [                                                CCGATCCTGCCGGGTATGCTCAAACA GACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGGTCCAATGAAATCCTGAATGGCAAT CTACATGGGATAATTCAACACTGGGAATATAAATTGTTTTTTGCCC                AAAAA     AGAGGAAAGAAC  CC CCGGGGGGGGCCCGGTACCCAATTTTTG    ]
[+] EMBL CA845321             [                                                           gcacgaGCTCAAACA GACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAAT CTACATGGAATAATTCAGCACT  GCAAATAAATTGTTTTTTGTCCAAACT                                                                      ]
[+] EMBL FR0056666            [                                                                                         CGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAAT CTACATGGAATAATTCAGCACT  GCAAATAAATTGTTTTTTGTCCAAACTTAAAAAAAAAAAAAAA     AAAAAAAAAAAA  CC CCGGGGGGGGCCCGGGACCCAATTTTTGGGCC]




>consensus_2798#1
CCATCAGCAGCTCTATTGGAGTCACCCTAGAAAGTTCGGCCAGGGATCCCGATCCTGCCG
GGTATGCTCAAACAGACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTG
CTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGA
CATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAATCTACATGGAATAATTCAGCA
CTGCAAATAAATTGTTTTTTGTCCAAACTTAAAAAAAAAAAAAAAAAACCCGGGGGGGGG
CCCGGTACCCAGTTTTTGGCCC

consensusID : consensus_2798#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 161
fasta sequence

                              [AGCAGCTCTATTGGAGTCACCCTAGAAAGTTCGGCCAGGGATCCCGATCCTGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAATCTACATGGAATAATTCAGCACTGCAAATAAATTGTTTTTTGTCCAA]

[+] EMBL CA330493             [AGCAGCTCTATTGGAGTCACCCTAGAAAGTTCGGCCAGGGATCCCGATCCTGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAATCTACATGGAATAATTCAGCACTGCAAATAAATTGTTTTTTGTCCAA]




>consensus_2798#2
AGCAGCTCTATTGGAGTCACCCTAGAAAGTTCGGCCAGGGATCCCGATCCTGCTGGACTG
AACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAATCTACA
TGGAATAATTCAGCACTGCAAATAAATTGTTTTTTGTCCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2798#0      AATTCGGCACGAGGACAAGATGGGCCATCAGCAGCTCTATTGGAGTCACCCTAGAAAGTT 60
consensus_2798#1      ------------------------CCATCAGCAGCTCTATTGGAGTCACCCTAGAAAGTT 36
consensus_2798#2      ------------------------------------------------------------
                                                                                  

consensus_2798#0      CGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACAGACACGGACTGATCCGCAAATA 120
consensus_2798#1      CGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACAGACACGGACTGATCCGCAAATA 96
consensus_2798#2      ------------------------------------------------------------
                                                                                  

consensus_2798#0      CGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACG-CTAAAGACATCGGCTTCGTTA 179
consensus_2798#1      CGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACG-CTAAAGACATCGGCTTCGTTA 155
consensus_2798#2      -----AGCAGCTCTATTGGAGTCACCCTAGAAAGTTCGGCCAGGGATCCCGATCCTG--- 52
                            * *  * *   *      *   **  *** ** * *  **   **     *   

consensus_2798#0      AGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATG 239
consensus_2798#1      AGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATG 215
consensus_2798#2      --CTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATG 110
                        **********************************************************

consensus_2798#0      CCAATCTACATGGAATAATTCAGCACTGCAAATAAATTGTTTTTTGTCCAAACTTAAAAA 299
consensus_2798#1      CCAATCTACATGGAATAATTCAGCACTGCAAATAAATTGTTTTTTGTCCAAACTTAAAAA 275
consensus_2798#2      CCAATCTACATGGAATAATTCAGCACTGCAAATAAATTGTTTTTTGTCCAA--------- 161
                      ***************************************************         

consensus_2798#0      AAAAAAAAAAGAAAAGAAAAAAAAAAGAAAAATAAAAAAAAAATAGAAAAACCCCCCGGG 359
consensus_2798#1      AAAAAAAAAA--AAACCCGGGGGGGGGCCCGGTACCCAGTTTTTGGCCC----------- 322
consensus_2798#2      ------------------------------------------------------------
                                                                                  

consensus_2798#0      GGGGGCCCCCAACCACTTTTTT 381
consensus_2798#1      ----------------------
consensus_2798#2      ----------------------

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)