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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2801#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 528 fasta sequence
[GCACGAGGGAAGATCTGTTCTGCATCCGCCTGGGAAAACAAGTGCTGACCCTCTGCAGACATGAGTGACAAACCAGACATCAA-AGAGGTCACAACCTTTGACAAGACCAAACTGAAGAAGACTGATACTCAGGAGAAAAACACATTGCCAACAAAAGAGACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC---TCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGT-AAAAAAGATGCTCAATAAAAATTTAAACTCGAAAAAAAAAAAAAAAAAAAAAAACCCGGGGGGGGCCCGGGACCCAAGTTTTGGGC]
[+] EMBL CA847263 [GCACGAGGGAAGATCTGTTCTGCATCCGCCTGGGAAAACCATTGCTGACCCTCTGCAGACATGAGTGACAAACCAGACATCAA AGAGGTCACAACCTTTGACAAGACCAAACTGAAGAAGACTGATACTCAGGAGAAAAACACATTGCCAACAAAAGAGACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGTAAAAAAAGATGCTCAATAAAAATT ]
[+] EMBL CA846767 [ CTGCATCCGCCTGGGAAAACAAGTGCTGACCCTCTGCAGACATGAGTGACAAACCAGACATCAA AGAGGTCACAACCTTTGACAAGACCAAACTGAAGAAGACTGATACTCAGGAGAAAAACACATTGCCAACAAAAGAGACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGTAAAAAAAGATGCTCAATAAAAATTT ]
[+] EMBL CA846432 [ CATCCGCCTGGGAAAACAAGTGCTGACCCTCTGCAGACATGAGTGACAAACCAGACATCAA AGAGGTCACAACCTTTGACAAGACCAAACTGAAGAAGACTGATACTCAGGAGAAAAACACATTGCCAACAAAAGAGACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGT AAAAAAGATGCTCAATAAAAATTTAAACTCGAAA ]
[+] EMBL CA844582 [ TCCGCCTGGGAAAACAAGTGCTGACCCTCTGCACATATGAGAGACAAACCAGACATCAA AGAGGTCACAACCTTTGACAAGACCAAACTGAAGAAGACTGATACTCAGGAGAAAAACACATTGCCAACAAAAGAGACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGT AAAAAAGATGCTCAATAAAAATTTAAACT ]
[+] EMBL CA330298 [ CGCCTGGGAAAACAAGTGCTGACCCTCTGCAGACATGAGTGACAAACCAGACATCAA AGAGGTCACAACCTTTGACAAGACCAAACTGAAGAAGACTGATACTCAGGAGAAAAACACATTGCCAACAAAAGAGACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGTAAAAAAAGATGCTCAATAAAAATTTAAA ]
[+] EMBL CA333528 [ GGGAAAACAAGTGCTGACCCTCTGCAGACATGAGTGACAAACCAGACATCAA AGAGGTCACAACCTTTGACAAGACCAAACTGAAGAAGACTGATACTCAGGAGAAAAACACATTGCCAACAAAAGAGACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGT AAAAAAGATGCTCAATAAAAATTTAAA ]
[+] EMBL CA847173 [ ctGGGAAACAAGTGCTGACCCTCTGCAGACATGAGTGACAAACCAGACATCAA AGAGGTCACAACCTTTGACAAGACCAAACTGAAGAAGACTGATACTCAGGAGAAAAACACATTGCCAACAAAAGAGACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGT AAAAAAGATGCTCAATAAAAATTTAAACTC ]
[+] EMBL FR0056287 [ ACAAGTGCTGACCCTCTGCAGACATGAGTGACAAACCAGACATCAA AGAGGTCACAACCTTTGACAAGACCAAACTGAAGAAGACTGATACTCAGGAGAAAAACACATTGCCAACAAAAGAGACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGT AAAAAAGATGCTCAATAAAAATTTAAACTCGAAAAAGAAAAAAAGAAGA ]
[+] EMBL FR0055634 [ ACAAGTGCTGAGCCTCTGCAGACATGAGTGCCAGACCAGACATCAC AGAGGTCACATGCTTTGACAGGACCATACTGGAGAAGACTGATACTCGGGAGAGCACCACATTGCCAGCANAAGAAACAGTCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAACATGACCCCTGGAACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGGCTCATCTGAGGGACCTACACTTTGGA ]
[+] EMBL FR0057596 [ GTGCTGACCCTCTGCAGACATGAGTGACAAACCAGACATCAA AGAGGTCACAACCTTTGACAAGACCAAGCTGAAGAAGACTGATACTCGGGAGAAAAACACATTGCCAACAAAAGAAACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAACTCTTCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTT ]
[+] EMBL FR0057203 [ GCTGACCCTCTGCAGACATGAGTGACAAACCAGACATCAA AGAGGTCACAACCTTTGACAAGACCAAACTGAAGAAGACTGATACTCAGGAGAAAAACACATTGCCAACAAAAGAGACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGT AAAAAAGATGCTCAATAAAAATTTAAACTCGAAAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL FR0057125 [ CCCTCTGCAGACATGAGTGACAAACCAGACATCAA AGAGGTCACAACCTTTGACAAGACCAAACTGAAGAAGACTGATACTCAGGAGAAAAACACATTGCCAACAAAAGAGACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGT AAAAAAGATGCTCAATAAAAATTTAAACTCGAAAAAAAAAAAAAAAAAAAAAACCCCGGGGGGGGCCCGGGACCCAAGTTTTGGGC]
[+] EMBL FR0062685 [ TCTGCAGACATGAGTGACAAACCAGACATCAA AGAGGTCACAACCTTTGACAAGACCAAACTGAAGAAGACTGATACTCAGGAGAAAAACACATTGCCAACAAAAGAGACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGGTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGGTGCTTGTAAATTAAGTTTCTTGAAGATCTGGAATACAAGTT ]
[+] EMBL FR0057486 [ AGACATGAGTGACAAACCAGACATCAA AGAGGTCACAACCTTTGACAAGACCAAACTGAAGAAGACTGATACTCAGGAGAAAAACACATTGCCAACAAAAGAGACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGT AAAAAAG ]
[+] EMBL FR0057421 [ ATGAGTGACAAACCAGACATCAA AGAGGTCACAACCTTTGACAAGACCAAACTGAAGAAGACTGATACTCAGGAGAAAAACACATTGCCAACAAAAGAGACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGTAAAAAAAGATGCTCAATAAAAATTTAAACTCGAAAAAAAAAAGAGAGGA ]
[+] EMBL FR0055572 [ CCAGACATCAATGGAGGTCACACCCTTTGACAGGACCAAACTGAAGAAGACTGATACTCGGGAGAACAACACATTGCCATCAGAAGAAACAATCGAACAGGAGAAGTCTGGATAATGCTCTGGTACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAACATGTCCCCTGGAACATTATGGAAGTGACCTGTCATGATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGGCTCATCTGAGGGACCTACACTTTGCACAACGCCTGGCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGC TAAAAAGATGCTC ]
[+] EMBL FR0057477 [ CCAGACATCAA GGAGGTCACAACCTTTGACAAGACCAAACTGAAGAAGACTGATACTCAGGAGAAAAACACATTGCCAACAAAAGAGACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGGATACAAGTTTGT AAAAAAGATGCTCAATAAAAATTTAAACTCGAAAAAAAAAAAAAA ]
[+] EMBL CA330418 [ AGAGACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGTTCTACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGT AAAAAAGATGCTCAATAAAAATTTAAAC ]
[+] EMBL CA845251 [ GACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGT AAAAAAGATGCTCAATAAAAATTTAAACTCG ]
[+] EMBL CA330372 [ GGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGT AAAAAAGATGCTCAATAAAAATTTAAAC ]
consensusID : consensus_2801#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 414 fasta sequence
[TTTTTCAGTGGTGGGTAAAGTATGTATTCTTTAGCAATGAGAAGTTTGGGTTTTTTCAGCTGAAACTTGTATATTATGCTGATGTACAGGAATAAACCTGAAAATCTCTTATGAATAAACAATCGAACAGGAGAAGTCAGCCTCAAGGGGGGGCCCGGTTTCCACATTGGGCACCCTTTTTCGTGAGGTATTCAGAATCATTCATCTAACTCAAGATGTGGCTTGCTAAAATGTCTCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGTAAAAGAGATGCTC]
[+] EMBL FR0056289 [TTTTTCAGTGGTGGGTAAAGTATGTATTCTTTAGCAATGAGAAGTTTGGGTTTTTTCAGCTGAAACTTGTATATTATGCTGATGTACAGGAATAAACCTGAAAATCTCTTATGAATAAACAATCGAACAGGAGAAGTCAGCCTCAAGGGGGGGCCCGGTTTCCACATTGGGCACCCTTTTTCGTGAGGTATTCAGAATCATTCATCTAACTCAAGATGTGGCTTGCTAAAATGTCTCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGTAAAAGAGATGCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2801#0 GCACGAGGGAAGATCTGTTCTGCATCCGCCTGGGAAAACAAGTGCTGACCCTCTGCAG-A 59
consensus_2801#1 -----------------------------------------------TTTTTCAGTGGTG 13
** * *
consensus_2801#0 CATGAGTGACAAACCAGACATCAAAGAGGTCACAACCTTTGACAAGACCAAACTGA---A 116
consensus_2801#1 GGTAAAGTATGTATTCTTTAGCAATGAGAAGTTTGGGTTTTTTCAGCTGAAACTTGTATA 73
* * * * * *** *** *** ** ***** *
consensus_2801#0 GAAGACTGATACTCAGGAGAAAAAC--ACATTGCCAACAAAAGAGACAATCGAACAGGAG 174
consensus_2801#1 TTATGCTGATGTACAGGAATAAACCTGAAAATCTCTTATGAATAAACAATCGAACAGGAG 133
* ***** ***** *** * * * * * ** * ***************
consensus_2801#0 AAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTC 234
consensus_2801#1 AAGTCAGCCTCAAGGGGGGGCCCGGTTTCCACATTGGGCACCCTTTTTCGTGAGGTATTC 193
***** * * * * ** ** * * ** ** *** * ***** * * ******
consensus_2801#0 AGAATCATTCATCTAACTCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAA 294
consensus_2801#1 AGAATCATTCATCTAACTCAAGATGTGGCTTGCTAAAATGTCTCCTGGCACAATAAGGAA 253
****************************************** *****************
consensus_2801#0 GTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGC 354
consensus_2801#1 GTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGC 313
************************************************************
consensus_2801#0 CTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGT 414
consensus_2801#1 CTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGT 373
************************************************************
consensus_2801#0 TTCTTGATGATCTGGAATACAAGTTTGTAAAAAAGATGCTCAATAAAAATTTAAACTCGA 474
consensus_2801#1 TTCTTGATGATCTGGAATACAAGTTTGTAAAAGAGATGCTC------------------- 414
******************************** ********
consensus_2801#0 AAAAAAAAAAAAAAAAAAAAAACCCGGGGGGGGCCCGGGACCCAAGTTTTGGGC 528
consensus_2801#1 ------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |