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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2811#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1033 fasta sequence
[CACCAAGAGGGTCCGACGGCTGGAAAAGTCCTTCCTATCTCCACACTCTTATCTTCAAAGTAAAAAAAAAAAGTAATCAAGATGGCCAGAGCTAGAGGTACCGCAATTGGCATCGACCTGGGCACCACCTACTCCTGTGTGGGGGTTTTCCAGCATGGAAAAGTGGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTACGTCGCCTTCTCCGACACGGAGAGGCTCATCGGGGACGCGGCAAAGAACCAGGTGGCCTTGAACCCCAGCAACACCGTGTTTGATGC-TAAGAGACTGATTGGGAGAAGATTGGAGGATCCCACCGTTCAAGGTGACATGAAACACTGGCCATTCCAGGTGGTTGGAGATGGAGGGAGGCCCAAAATCCAGGTGGACTACAAAGGAGAGGAAAAGAGCTTCTACCCTGAGGAGATTTCCTCAATGGTTCTGGTGAAGATGAAGGAGATCTCAGAGGCCTACCTCGGTCAGAAGGTGTCTGATGCCGTCATCACGGTCCCGGCGTACTTCAACGACTCTCAGAGACAGGCGACCAAAGACGCCGGCGTCATCGCCGGATTGAACGTCCTGAGGATCATCAACGAGCCGACGGCTGCAGCCATCGCATACGGTCTGGACAAAGGCAAGTCTGGAGAACGCAACGTCCTGATCTTTGACCTGNGAGGAGGCACCTTTGACGTGTCCACCCTGACCATTGAAGACGGTATCTTTGAGGTCAAAGCCACGGCTGGAGACACTCACCTGGGTGGAGAGGACTTTGACAACCGCATGGTGAACCACTTTGTGGAGGAATTCAAGAGGAAGCAGAAGAAGGACATCAGCCAGAACAAGAGAGCCCTGAGGAGGTTGCGCACAGCTTGTGAGAGGGCCAAGAGAACCCTGTCCTCCAGCACCCAGGCCAGCATTGAGATCGATTCACTGTTTGAGGGCATCGACTTCTACACCTCCATCACCAGGGCTCGTTTTGAGGAGCTGTGCGGTGACCTTTTCAGAGGAACTCTGGATC]
[+] EMBL CA589006 [CACCAAGAGGGTCCGACGGCTGGAAAAGTCCTTCCTATCTCCACACTCTTATCTTCAAAGT AAAAAAAAAAGTAATCAAGATGGCCAGAGCTAGAGGTACCGCAATTGGCATCGACCTGGGCACCACCTACTCCTGTGTGGGGGTTTTCCAGCATGGAAAAGTGGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTACGTCGCCTTCTCCGACACGGAGAGGCTCATCGGGGACGCGGCAAAGAACCAGGTGGCCTTGAACCCCAGCAACACCGTGTTTGATGC TAAGAGACTGATTGGGAGAAGATTGGAGGATCCCACCGTTCAAGGTGACATGAAACACTGGCCATTCCAGGTGGTTGGAGATGGAGGGAGGCCCAAAATCCAGGTGGACTACAAAGGAGAGGAAAAGAGCTTCTACCCTGAGGAGATTTCCTCAATGGTTCTGGTGAAGATGAAGGAGATCTCAGAGGCCTACCTCGGTCAGAAGGTGTCTGATGCCGTCATCACGGTCCCGGCGTACTTCAACGACTCTCAGAGACAGGCGACCAAAGACGCCGGCGTCATCGCCGGATTGAACGTCCTGAGGATCATCAACGAGCCGACGGCTGCAG ]
[+] EMBL BU807962 [ ACCAAGAGGGTCCGACGGCTGGAAAAGTCCTTCCTATCTCCACACTCTTATCTTCAAAGTAAAAAAAAAAAGTAATCAAGATGGCCAGAGCTAGAGGTACCGCAATTGGCATCGACCTGGGCACCACCTACTCCTGTGTGGGGGTTTTCCAGCATGGAAAAGTGGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTACGTCGCCTTCTCCGACACGGAGAGGCTCATCGGGGACGCGGCAAAGAACCAGGTGGCCTTGAACCCCAGCAACACCGTGTTTGATGC TAAGAGACTGATTGGGAGAAGATTGGAGGATCCCACCGTTCAAGGTGACATGAAACACTGGCCATTCCAGGTGGTTGGAGATGGAGGGAGGCCCAAAATCCAGGTGGACTACAAAGGAGAGGAAAAGAGCTTCTACCCTGAGGAGATTTCCTCAATGGTTCTGGTGAAGATGAAGGAGATCTCAGAGGCCTACCTCGGTCAGAAGGTGTCTGATGCCGTCATCACGGTCCCGGCGTACTTCAACGACTCTCAGAGACAGGCGACCAAAGACGCCGGCGTCATCGCCGGATTGAACGTCCTGAGGATCATCAACGAGCCGACGGCTGCAGCCATCGCATACGGTCTGGACAAAGGCAAGTCTGGA ]
[+] EMBL BU808128 [ ACCAAGAGGGTCCGACGGCTGGAAAAGTCCTTCCTATCTCCACACTCTTATCTTCAAAGTAAAAAAAAAAAGTAATCAAGATGGCCAGAGCTAGAGGTACCGCAATTGGCATCGACCTGGGCACCACCTACTCCTGTGTGGGGGTTTTCCAGCATGGAAGAGTGGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTACGTCGCCTTCTCCGACACGGAGAGGCTCATCGGGGACGCGGCAAAGAACCAGGTGGCCTTGAACCCCAGCAACACCGTGTTTGATGC TAAGAGACTGATTGGGAGAAGATTGGAGGATCCCACCGTTCAAGGTGACATGAAACACTGGCCATTCCAGGTGGTTGGAGATGGAGGGAGGCCCAAAATCCAGGTGGACTACAAAGGAGAGGAAAAGAGCTTCTACCCTGAGGAGATTTCCTCAATGGTTCTGGTGAAGATGAAGGAGATCTCAGAGGCCTACCTCGGTCAGAAGGTGTCTGATGCCGTCATCACGGTCCCGGCGTACTTCAACGACTCTCAGAGACAGGCGACCAAAGACGCCGGCGTCATCGCCGGATTGAACGTCCTGAGGATCATCAACGAGCCGACGGCTGCAGCCATCGCATACG ]
[+] EMBL BU805740 [ ACCAAGAGGGTCCGACGGCTGGAAAAGTCCTTCCTATCTCCACACTCTTATCTTCAAAGTAAAAAAAAAAAGTAATCAAGATGGCCAGAGCTAGAGGTACCGCAATTGGCATCGACCTGGGCACCACCTACTCCTGTGTGGGGGTTTTCCAGCATGGAAAAGTGGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTACGTCGCCTTCTCCGACACGGAGAGGCTCATCGGGGACGCGGCAAAGAACCAGGTGGCCTTGAACCCCAGCAACACCGTGTTTGATGC TTAGAGACTGATTGGGAGAAGATTGGAGGATCCCACCGTTCAAGGTGACATGAAACACTGGCCATTCCAGGTGGTTGGAGATGGAGGGAGGCCCAAAATCCAGGTGGACTACAAAGGAGAGGAAAAGAGCTTCTACCCTGAGGAGATTTCCTCAATGGTTCTGGTGA ]
[+] EMBL BU808298 [ CAAGAGGGTCCGACGGCTGGAAAAGTCCTTCCTATCTCCACACTCTTATCTTCAAAGTAAAAAAAAAAAGTAATCAAGATGGCCAGAGCTAGAGGTACCGCAATTGGCATCGACCTGGGCACCACCTACTCCTGTGTGGGGGTTTTCCAGCATGGAAAAGTGGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTACGTCGCCTTCTCCGACACGGAGAGGCTCATCGGGGACGCGGCAAAGAACCAGGTGGCCTTGAACCCCAGCAACACCGTGTTTGATGC TAAGAGACTGATTGGGAGAAGATTGGAGGATCCCACCGTTCAAGGTGACATGAAACACTGGCCATTCCAGGTGGTTGGAGATGGAGGGAGGCCCAAAATCCAGGTGGACTACAAAGGAGAGGAAAAGAGCTTCTACCCTGAGGAGATTTCCTCAATGGTTCTGGTGAAGATGAAGGAGATCTCAGAGGCCTACCTCGGTCAGAAGGTGTCTGATGCCGTCATCACGGTCCCGGCGTACTTCAACGACTCTCAGAGACAGGCGACCAAAGACGCCGGCGTCATCGCCGGATTGAACGTCCTGAGGATCATCAACGAGCCGACGGCTGCAGCCATCGCATAC ]
[+] EMBL BU807843 [ CAAGAGGGTCCGACGGCTGGAAAGGTCCTTCCTATCTCCACACTCTTATCTTCAAAGTAAAAAAAAAAAGTAATCAAGATGGCCAGAGCTAGAGGTACCGCAATTGGCATCGACCTGGGCACCACCTACTCCTGTGTGGGGGTTTTCCAGCATGGAAAAGTGGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTACGTCGCCTTCTCCGACACGGAGAGGCTCATCGGGGACGCGGCAAAGAACCAGGTGGCCTTGAACCCCAGCAACACCGTGTTTGATGC TAAGAGACTGATTGGGAGAAGATTGGAGGATCCCACCGTTCAAGGTGACATGAAACACTGGCCATTCCAGGTGGTTGGAGATGGAGGGAGGCCCAAAATCCAGGTGGACTACAAAGGAGAGGAAAAGAGCTTCTACCCTGAGGAGATTTCCTCAATGGTTCTGGTGAAGATGAAGGAGATCTCAGAGGCCTACCTCGGTCAGAAGGTGTCTGATGCCGTCATCACGGTCCCGGCGTACTTCAACGACTCTCAGAGACAGGCGACCAAAGACGCCGGCGTCATCGCCGGATTGAACGTCCTGAGGATCATCAACGAGCCGACGGCTGCAGCCATCGCATAC ]
[+] EMBL CA845992 [ CAACAGTTTCCGACGGCTGGAAAAGTCCTTCCTATCTCCACACTCTCATCTTCAAAGTAAAAAAAAAAAGTAATCAAGATGGCCAGAGCTAGAGGTACCGCAATTGGCATCGACCTGGGCACCACCTACTCCTGTGTGGGGGTTTTCCAGCATGGAAAAGTGGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTACGTCGCCTTCTCCGACACGGAGAGGCTCATCGGGGACGCGGCAACGAACCAGGTGGCCTTGAACCCCAGCAACACCGTGTTTGATGC TAAGAGACTGATTGGGAGAAGATTGGAGGATCCCACCGTTCAAGGTGACATGAAACACTGGCCATTCCAGGTGGTTGGAGATGGAGGGAGGCCCAAAATCCAGGTGGACTACAAAGGAGAGGAAAAGAGCTTCTACCCTGAGGAGATTTCCTCAATGGTTCTGGTGAAGATGAAGGAGATCTCAGAGGCCTACCTCGGTCAGAAGGTGTCTGATGCCGTCATCACTGTCCCGGCGTACTTCAACGACTCTCAGAGACAGGCGACCAAAGACGCCGGCGTCATCGCCGGATTGAACGTCCTGAGGATCATCAACGAGCCGACGGCTGCAGCCATCGCATACGGTCTGGACAAAGGCAAGTCTGGAGAACGCAACGTCCTGATCTTTGACCTGNGAGGAGGCACCTTTGATGTGTCCACCCTAATCATTGAAGACGGTATCTTTGAGGTCAAAGCCACGGCTGGAGACACTCACCTGGGTGGAGAGGACTTTGACAACCGCATGGTGAACCACTTTGTGGAGGAATTCAAGAGGAAGCAGAAGAAGGAC ]
[+] EMBL CA589005 [ AGGGTCCGACGGCTGGAAAAGTCCTTCCTATCTCCACACTCTTATCTTCAAAGTAAAAAAAAAAAGTAATCAAGATGGCCAGAGCTAGAGGTACCGCAATTGGCATCGACCTGGGCACCACCTACTCCTGTGTGGGGGTTTTCCAGCATGGAAAAGTGGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTACGTCGCCTTCTCCGACACGGAGAGGCTCATCGGGGACGCGGCAAAGAACCAGGTGGCCTTGAACCCCAGCAACACCGTGTTTGATGC TAAGAGACTGATTGGGAGAAGATTGGAGGATCCCACCGTTCAAGGTGACATGAAACACTGGCCATTCCAGGTGGTTGGAGATGGAGGGAGGCCCAAAATCCAGGTGGACTACAAAGGAGAGGAAAAGAGCTTCTACCCTGAGGAGATTTCCTCAATGGTTCTGGTGAAGATGA ]
[+] EMBL CA588655 [ ttaGGCCGACGGCTGGAAAAGTCCTTCCTATCTCCACATCTTTAAAATCAAAGTAAAAAAAAAAAGTAATCAAGATGGCCAGAGCTAGAGGTACCGCAATTGGCATCGACCTGGGCACCACCTACTCCTGTGTGGGGGTTTTCCAGCATGGAAAAGTGGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTACGTCGCCTTCTCCGACACGGAGAGGCTCATCGGGGACGCGGCAAAGAACCAGGTGGCCTTGAACCCCAGCAACACCGTGTTTGATGC TAAGAGACTGATTGGGAGAAGATTGGAGGATCCCACCGTTCAAGGTGACATGTTTTACTGGCCATTCCAGGTGGTTGGAGATGGAGGGAGGCCCAAAATCCAGGGGGACTACAAAGGAGAGGAAAAGAGCTTCTACCCTGAGGAGATTTCCTCAATGGTTCTGGGGAAGATGAAGGAGATCTCAGAGGGCTACCTCGGGCAGAAGGTGTCTGATGCCGTCATCACGGTCCCGGGGTAACTAAACGACTCTCAGAGACAGGGGACCAAGAAg ]
[+] EMBL BU807048 [ CTTCCTATCGCCACACTCTTATCTTCAAAGT AAAAAAAAGTAATCAAGATGGCCAGAGCTAGAGGTACCGCAATTGGCATCGACCTGGGCACCACCTACTCCCGTGTGGGGGTTTTCCAGCATGGAAAAGTAGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTACGTGGCCTTCACCGACACGGAGAGGCTCATCGTTTATTTGGCAAAGAACCAGGTGGCCTTGAACCCCAGCAACACCGTGTTTGATGC TAAGAGACTGATTGGGAGAAGATTGGAGGATCCCACCGTTCAAGCTGACATAAAACACTGGCCATTCAATGTGGTTGGAGATGGAGGGAGGCCCAAAATCCAGGTGGAATACAAAGGAGAGGAAAAGAGCTTCTACCCTGAGGAGATTTCCTCTATGGTTCTGGTGAAGATGAAGGAGATCGCAGAGGCCTACCTCGGTCAGAAGGTGTCTGATGCCGTCATCACGGTCCCGGCGTACTTCAACGACTCTCAGAGACAGGCGACCAAAGACGCCGGCGTCATCGCCGGATTGAACGTCCTGAGGATCATCAACGAGCCGACGGCTG ]
[+] EMBL FR0061938 [ CTTCCTATCTCCACACTCTTATCTTCAAAGTAAAAAAAAAAGGGGATCAAGATGGCCAGTACTAGAGCTACCGCAATTGGCATCGACCTGGGCACCACCTACTCCTGTGGGGGGGTTTTCCAGCATGGAAAAGTGGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTACGTCGCCTTTTCCGACACGGAGAGGCTTATCGGGGACGCGGCAAAGAACCAGGTGGCCTTGAACCCCACCAACACCGTGTTTGATGCTTAAGAGACTGATTGGGAGAAGATTGGGGGATCCCACCG ]
[+] EMBL FR0061592 [ tAGGTAAAAAAAAAGGGAGTCAAGATGGCCAGAGCTAGAGGTACCGCAATTGGCATCGACCTGGGCACCACCTACTCCTGTGTGGGGGTTTTCCAGCATGGAAAAGTGGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTACGTCGCCTTCTCCGACACGGAGAGGCTCATCGGGGACGCGGCAAAGAACCAGGTGGCCTTGAACCCCAGCAACACCGTGTTTGATGC TAAGAGACTGATTGGGAGAAGATTGGAGGATCCCACCGTTCAAGGTGACATGAAACACTGGCCATTCCAGGTGGTTGGAGATGGAGGGAGGCCCAAAATCCAGGTGG ]
[+] EMBL CA846857 [ CCTGAGGAGATTTCCTCTATGGTTCTGGTGAAGATGAAGGAGATCGCAGAGGCCTACCTCGGTCAAAAGGTGTCCAGCGCCGTCATCACGGTCCCGGCGTACTTCAACGACTCTCAGAGACAGGCGACCAAAGACGCCGGCGTCATCGCCGGATTGAACGTGCTGAGGATTATCAACGAGCCGACGGCTGCAGCCATCGCGTACGGTCTGGACAAAGGCAAGTCGGCGGAACGCAACGTCCTGATCTTTGACCTGGGAGGAGGCACCTTTGACGTGTCCATCCTGACCATTGAAGACGGTATCTTTGAGGTCAAAGCCACGGCTGGAGACACTCACCTGGGTGGAGAGGACTTTGACAACCGCATGGTGAACCACTTTGTGGAGGAATTCAAGAGGAAGCAGAAGAAGGACATCAGCCAGAACAAGAGAGCCCTGAGGAGGTTGCGCACAGCTTGTGAGAGGGCCAAGAGAACCCTGTCCTCCAGCACCCAGGCCAGCATTGAGATCGATTCACTGTTTGAGGGCATCGACTTCTACACCTCCATCACCAGGGCTCGTTTTGAGGAGCTGTGCGGTGACCTTTTCAGAGGAACTCTGGATC]
consensusID : consensus_2811#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 872 fasta sequence
[ATTCAAGATTCAAGATTCAAGATAACTTTATTGATCCCTTTAGGGGGTGTCCACCAGGGA---GAAGAAGAGGTGAGACT--CCACTCAGA------GTC-ATCGCAACAA-TACACCAGTCTCCAGTGCAAATGTCTGCAGCTAAAGGTTTAGCGATTGGCATCGACCTGGGCACCACCTACTCCTGTGTGGGGGTTTTCCAGCATGGAAAAGTAGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTACGTGGCGTTCACCGACACGGAGAGGCTCATCGGGGACGCGGCAAAGAACCAGGTGGCCTTGAACCCCAGCAACACCGTGTTTGATGCTAAGAGACTGATTGGGAGAAGATTGGAGGATCCCACCGTTCAAGCTGACATAAAACACTGGCCATTCAAGGTGGTTGGAGATGGAGGGAAGCCCAAAATCCAGGTGGACTACAAAGGAGAGGAAAAGAGCTTCTACCCTGAGGAGATTTCCTCTATGGTTCTGGTGAAGATGAAGGAGATCGCAGAGGCCTACCTCGGTCAGAAGGTGTCCAGCGCCGTCATCACGGTCCCGGCGTACTTCAACGACTCTCAGAGACAGGCGACCAAAGACGCCGGCGTCATCGCCGGATTGAACGTGCTGAGGATCATCAACGAGCCGACGGCTGCAGCCATCGCGTACGGTCTGGACAATGGCAAGTCGGCGGAACGCAACGTCCTGATCTTTGACCTGGGAGGAGGCACCTTTGACGTGTCCATCCTGACCATTGAAGACGGTATCTTTGAGGTCAAAGCCACGGCTGGAGACACTCACCTGGGTGGAGAGGACTTTGACAACCGCATGGTGAACCACTTTGTGGAGGAATTCAAGCGGAAGCAG]
[+] EMBL CA591451 [ATTCAAGATTCAAGATTCACTATAACTTTATTGATCCCTTTAGGGGGTGTCCACCAGGGA AATCAAGAGGTTTTCCTCACCACTCAGA ATCGCCACTA TACACCAGTCTCCAGTGCAAATGTCTGCAGCTAAAGGTTTAGCGATTGGCATCGACCTGGGCACCACCTACTCCTGTGTGGGGGTTTTCCAGCATGGAAAAGTAGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTACGTGGCGTTCACTGACACAGAGAGGCTCATCGGGGACGCGGCAAAGAACCAGGTGGCCTTGAACCCCAGCAACACCGTGTTTGATGCTAAGAGACTGATTGGGAGAAGATTGGAGGATCCCACCGTTCAAGGTGACATAAAACACTGGCCATTCAAGGTGGTTGGAGATGGAGGGAAGCCCAAAATCCAGGTGGAATACA ]
[+] EMBL CA332846 [ CAAGATTCAAGATAACTTTATTGATCCCTTTAGGGGGTGTCCACCAGGGA AATCAAGAGGTTTTCCTCACCACTCAGA ATCGCCACTA TACACCAGTCTCCAGTGCAAATGTCTGCAGCTAAAGGTTTAGCGATTGGCATCGACCTGGGCACCACCTACTCCTGTGTGGGGGTTTTCCAGCATGGAAAAGTAGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTACGTGGCGTTCACTGACACAGAGAGGCTCATCGGGGACGCGGCAAAGAACCAGGTGGCCTTGAACCCCAGCAACACCGTGTTTGATGCTAAGAGACTGATTGGGAGAAGATTGGAGGATCCCACCGTTCAAGGTGACATAAAACACTGGCCATTCAAGGTGGTTGCAGATGGAGGGAAGCCCAAAATCCAGGTGGAATACAAAGGGGAGGAAAAGACCTTCTACCCTGAG ]
[+] EMBL FR0060691 [ atTCAACAGGAGAGCCGGAGAACAGGGGAGATT CTTTTCAGAACACACGTCGAACGCAACAACTACACCAGTCTCCAGTGCAAATGTCTGCAGCTAAAGGTTTAGCGATTGGCATCGACCTGGGAACCACCTACTCCTGTGTGGGGGTTTTCCAGCATGGAAAAGTAGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTACGTGGCCTTCACCGACACGGAGAGGCTCATCGGGGACGCGGCAAAGAACCAGGTGGCCTTGAACCCCAGCAACACCGTGGTTGATG ]
[+] EMBL CA588104 [ gaCCGCTA GAAGACGAAGAGAGACT CCACTCAGA GTC ATCACAACAC TATACCAGTCTCCAGTGCAAATGTCTGCAGCTAAAGGTTTAGCGATTGGCATCGACCTGGGCACCACCTACTCCTGTGTGGGGGTTTTTCAGCATGGAAAAGTAGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTACGTGGCCTTCACCGACACAGAGAGGCTCATCGGGGACGCGGCAAAGAACCAGGTGGCCTTGAACCCCAGCAACACCGTGTTTGATGCTAAGAGACTGATTGGGAGAAGATTGGAGGATCCCACCGTTCAAGCTGACATAAAACACTGGCCATTCAAGGTGGTTGGAGATGGAGGGAAGCCCAAAATCCAGGTGGACTACAAAGGAGAGGAAAAGAGCTTCTACCCTGAGGAGATTTCCTCTATGGTTCTGGTGAAGATGAAGGAGATCGCAGAGGCCTACCTCGGTCAGAAGGTGTCCAGCGCTGTCATCACGGTCCCAGCGTACTTCAACGACTCTCAGAGACAGGCGACCAAAGACGCCGGCGTCATCGCCGGATTAAACGTCCTGAGGATCATCAACGAGCCGACGGCTGCAGCCATCGCGTACGGTCTGGACAATGGCAAGTCGGCGGAACGCAACGTCCTGATCTTTGACCTGGGAGGAGGCACCTTTGACGTGTCCATCCTGACCATTGAAGACGGTATCTTTGAGGTCAAAGCCACGGCTGGAGACACTCACCTGGGTGGAGAGGACTTTGACAACCGCATGGTGAACCACTTTGTGGAGGAATTCAAGCGGAAGCAG]
[+] EMBL CA340911 [ gCT CCACTCAGA GTC ATCACAACAA TACACCAGTCTCCAGTGAAAATGTCTGCAGCTAAAGGTTTAGCGATTGGCATCGACCTGGGCACCACCTACTCCTGTGTGGGGGTTTTCCAGCATGGAAAAGTAGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTACGTGGCGTTCACTGACACGGAGAGGCTCATCGGGGACGCGGCAAAGAACCAGGTGGCCTTGAACCCCAGCAACACCGTGTTTGATGCTAAGAGACTGATTGGGAGAAGATTGGAGGATCCCACCGTTCAAGCTGACATAAAACACTGGCCATTCAAGGTGGTTGGAGATGGAGGGAAGCCCAAAATCCAGGTGGACTACAAAGGAGAGGAAAAGAGCTTCTACCCTGAGGAGATTTCCTCTATGGTTCTGGTGAAGATGAAGGAGATCGCAGAGGCCTACCTCGGTCAAAAGGTGTCCAGCGCCGTCATCACGGTCCCGGCGTACTTCAACGACTCTCAGAGACAGGCGACCAAAGACGCCGGCGTCATCGCCGGATTGAACGTGCTGAGGATTATCAACGAGCCGACGGCTGCAGCCATCGCGT ]
[+] EMBL FR0059003 [ tttTGCAAATGCTTCCAGCTAAAGG GGGGCGATTGTCATCGACCTGGNAACCACCTACTCCTGTGTGGGGGTTTTCCAGCATGGAAAAGTAGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTACGTGGCCTTCACCGACACGGAGAGGCTCATCGGGGACGCGGCAAAGAACCAGGTGGCCTTGAACCCCAGCAACACCGTGTTTGATGCTAAGAGACTGATTGGGAGAAGATTGGAGGATCCCACCGTTCAAGCTGACATAAAACACTGGCCATTCAAGGTGGTTGGAGATGGAGGGAAGCCCAAAATCCAGGTGGACTACAAAGGAGAGGAAAAGAGCTTCTACCCT ]
consensusID : consensus_2811#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence
[CCACCCAGGCCAGCATTGAGATCGATTCACTGTTTGAGGGCATCGACTTCTACACCTCCATCACCAGGGCTCGTTTTGAGGAGCTGTGCGGTGACCTTTTCAGAGGAACTCTGGATCCCGTGGAGAAAGCCCTGAGAGATGCCAAAATGGACAAAGGACAGATCAACGATATTGTCCTGGTCGGTGGCTCCACGAGAATCCTCTTTTTTCAGAAACTCCTGCAGGATTTCTTCAACGGCAGAGAGCTGAACAAGAGCATCAACCCAGACGAGGCGGTGGCTTACGGTGCTGCCGTCCAAGCCGCCATTCTGACAGGAGACACCTCGGGTAACGTTCAGGACCTGCTTCTGCTGGATGTGGCCCCTCTGTCGCTGGGTATCGAGACAGCAGGAGGAGTCATGACGGCCCTGATTAAACGCAACACCACCATCCCCACCAAGCAGACCCAGATCTTCAGCACCTATGCAGACAACCAGCCGGGGGTCCTCATCCAAGTGTATGAAGGAGAAAGAGCCATGACCAAGGACAACAACCTCCTGGGCAAGTTTGAGCTTGCGGGCCTCCCGGCTGCTCCCCGAGGGGGTCCGCAG]
[+] EMBL CA844807 [CCACCCAGGCCAGCATTGAGATCGATTCACTGTTTGAGGGCATCGACTTCTACACCTCCATCACCAGGGCTCGTTTTGAGGAGCTGTGCGGTGACCTTTTCAGAGGAACTCTGGATCCCGTGGAGAAAGCCCTGAGAGATGCCAAAATGGACAAAGGACAGATCAACGATATTGTCCTGGTCGGTGGCTCCACGAGAATCCTCTTTTTTCAGAAACTCCTGCAGGATTTCTTCAACGGCAGAGAGCTGAACAAGAGCATCAACCCAGACGAGGCGGTGGCTTACGGTGCTGCCGTCCAAGCCGCCATTCTGACAGGAGACACCTCGGGTAACGTTCAGGACCTGCTTCTGCTGGATGTGGCCCCTCTGTCGCTGGGTATCGAGACAGCAGGAGGAGTCATGACGGCCCTGATTAAACGCAACACCACCATCCCCACCAAGCAGACCCAGATCTTCAGCACCTATGCAGACAACCAGCCGGGGGTCCTCATCCAAGTGTATGAAGGAGAAAGAGCCATGACCAAGGACAACAACCTCCTGGGCAAGTTTGAGCTTGCGGGCCTCCCGGCTGCTCCCCGAGGGGGTCCGCAG]
consensusID : consensus_2811#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence
[GAAGATGAGAGTGTGGAGATAGGCAGGACTTTTCCAGCCGTCGGACCCTCTTGGTGGTTTCCGTACACTCGGAGATGCCCCTGGCGCAGACGGTATCTATGACTTTTCTGTCTCCCGCGAGGGTGATGCTTGAAGTGGCCCGTGGACCAATCACAGAGCAGCGCGCGGGTGTGGCCGTGGAAGTTTCTTCGGGGTTCTGTTTTTAATAAGGAATGGCGGGAGTTACAAAACAGTTACAAATCAGTTTTGCCACAGTCCCGGCACATCCATCTGCGGGCAACACGAGCAGCTCCACACCCGCGACCGGCGAGACGGCCGCGACCGCCACAAGAGAATTGTGTGGAAAAGCAGTCCAAAAATCCACGGTGTTTGTACAGCGCCCCCAGGCGCCACCCCCCGAGCCCCCGCAGCAAGAATGGTCTCCGGAGCCCCAAGCCAAACAGGGAGCCCTGGGCACGTGCCCCGCCACAAGACGGGGGAGCCGACTCTCCACCAGCGGGAAGAATCCTCCACCGAGGGGCCCATGCCGTCG]
[+] EMBL CA329627 [GAAGATGAGAGTGTGGAGATAGGCAGGACTTTTCCAGCCGTCGGACCCTCTTGGTGGTTTCCGTACACTCGGAGATGCCCCTGGCGCAGACGGTATCTATGACTTTTCTGTCTCCCGCGAGGGTGATGCTTGAAGTGGCCCGTGGACCAATCACAGAGCAGCGCGCGGGTGTGGCCGTGGAAGTTTCTTCGGGGTTCTGTTTTTAATAAGGAATGGCGGGAGTTACAAAACAGTTACAAATCAGTTTTGCCACAGTCCCGGCACATCCATCTGCGGGCAACACGAGCAGCTCCACACCCGCGACCGGCGAGACGGCCGCGACCGCCACAAGAGAATTGTGTGGAAAAGCAGTCCAAAAATCCACGGTGTTTGTACAGCGCCCCCAGGCGCCACCCCCCGAGCCCCCGCAGCAAGAATGGTCTCCGGAGCCCCAAGCCAAACAGGGAGCCCTGGGCACGTGCCCCGCCACAAGACGGGGGAGCCGACTCTCCACCAGCGGGAAGAATCCTCCACCGAGGGGCCCATGCCGTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2811#0 -------------------------------------CACCAAGAGG-GTCCGACGGCTG 22
consensus_2811#1 ATTCAAGATTCAAGATTCAAGATAACTTTATTGATCCCTTTAGGGGGTGTCCACCAGGGA 60
consensus_2811#2 ------------------------------------------------------------
consensus_2811#3 ------------------------------------------------------------
consensus_2811#0 GAAAAGTCCTTCCTATCTCCACACTCTTATCTTCAAAGTAAAAAAAAAAAGT--AATCAA 80
consensus_2811#1 GAAGAAGAGGTGAGA-CTCCACTCAGA-GTCATCGCAACAATACACCAGTCTCCAGTGCA 118
consensus_2811#2 ------------------------------------------------------------
consensus_2811#3 ------------------------------------------------------------
consensus_2811#0 GATGGCCAGAGCTAGAGGTACCGCAATTGGCATCGACCTGGGCACCACCTACTCCTGTGT 140
consensus_2811#1 AATGTCTGCAGCTAAAGGTTTAGCGATTGGCATCGACCTGGGCACCACCTACTCCTGTGT 178
consensus_2811#2 ------------------------------------------------------------
consensus_2811#3 ------------------------------------------------------------
consensus_2811#0 GGGGGTTTTCCAGCATGGAAAAGTGGAAATCATCGCCAACGACCAGGGCAACAGGACCAC 200
consensus_2811#1 GGGGGTTTTCCAGCATGGAAAAGTAGAAATCATCGCCAACGACCAGGGCAACAGGACCAC 238
consensus_2811#2 ------------------------------------------------------------
consensus_2811#3 ------------------------------------------------------------
consensus_2811#0 CCCCAGCTACGTCGCCTTCTCCGACACGGAGAGGCTCATCGGGGACGCGGCAAAGAACCA 260
consensus_2811#1 CCCCAGCTACGTGGCGTTCACCGACACGGAGAGGCTCATCGGGGACGCGGCAAAGAACCA 298
consensus_2811#2 -----------------------CCACCCAGGCCAGCATTGAGATCGATTCACTGTTTGA 37
consensus_2811#3 -------------------------GAAGATGAGAGTGTGGAGATAGGCAGGACTTTTCC 35
* * * * *
consensus_2811#0 GG---TGGCCTTGAACCCCAGCAACACCGTGTTTGATGCTAAGAGACTGATTGG-GAGAA 316
consensus_2811#1 GG---TGGCCTTGAACCCCAGCAACACCGTGTTTGATGCTAAGAGACTGATTGG-GAGAA 354
consensus_2811#2 GGGCATCGACTTCTACACCTCCATCACCAGGGCTCGTTTTGAGGAGCTGTGCGGTGACCT 97
consensus_2811#3 AGCCGTCGGACCCT--CTTGGTGGTTTCCGTACACTCGGAGATGCCCCTGGCGCAGACGG 93
* * * * * * * **
consensus_2811#0 GATTGGAGGATCCCACCGTTCAAGGTGACATGAAACACTGGCCATTCCAGGTGGTTGGAG 376
consensus_2811#1 GATTGGAGGATCCCACCGTTCAAGCTGACATAAAACACTGGCCATTCAAGGTGGTTGGAG 414
consensus_2811#2 TTTCAGAGGAACTCTGGATCCC--GTGGAGAAAGCCCTGAGAGATGCCAA--AATGGACA 153
consensus_2811#3 TATCT-ATGACTTTTCTGTCTCCCGCGAGGGTGATGCTTGAAGTGGCCCG----TGGACC 148
* * ** * * * * *
consensus_2811#0 ATGGAGGGAGGCCCAAAATCCAGGTGGACTACAAAGGAGAGGAAAAGAGCTTCTACCCTG 436
consensus_2811#1 ATGGAGGGAAGCCCAAAATCCAGGTGGACTACAAAGGAGAGGAAAAGAGCTTCTACCCTG 474
consensus_2811#2 AAGGACAGATCAACGATATTGTCCTGGT---CGGTGGCTCCACGAGAATCCTCTTTTTTC 210
consensus_2811#3 AATCACAGAGCAGCG-CGCGGGTGTGGCCGTGGAAGTTTCTTCGGGG---TTCTGTTTTT 204
* * ** * *** * *** *
consensus_2811#0 AGGAGATTTCCTCAATGGTTCTGGTGAAGATGAAGGAGATCTCAGAGGCCT--ACCTCGG 494
consensus_2811#1 AGGAGATTTCCTCTATGGTTCTGGTGAAGATGAAGGAGATCGCAGAGGCCT--ACCTCGG 532
consensus_2811#2 AGAAA--CTCCTGCAGGATTTCTTCAACGGCAGAGAGCTGAACAAGAGCATCAACCCAGA 268
consensus_2811#3 AATAA------------------GGAATGGCGG-GAGTTACAAAACAGTTACAAATCAGT 245
* * * * * * * * *
consensus_2811#0 TCAGAAGGTGTCTGATGCCGTCATCA-CGGTCCCGGCGTACTTCAACGACTCTCAGAGAC 553
consensus_2811#1 TCAGAAGGTGTCCAGCGCCGTCATCA-CGGTCCCGGCGTACTTCAACGACTCTCAGAGAC 591
consensus_2811#2 CGAGGCGGTGGCTTACGGTGCTGCCGTCCAAGCCGCCATTCTGACAGGAGACACCTCGGG 328
consensus_2811#3 TTTGCCACAGTCC--CGGCACATCCATCTG--CGGGCAACACGAGCAGCTCCACACCCGC 301
* * * * * * * * * * * *
consensus_2811#0 AGGCGACCAAAGACGCCGGCGTCATCGCCGGAT-TGAACGTCCTGAGGATCATCAACGAG 612
consensus_2811#1 AGGCGACCAAAGACGCCGGCGTCATCGCCGGAT-TGAACGTGCTGAGGATCATCAACGAG 650
consensus_2811#2 TAACGTTCAGG---ACCTGCTTC--TGCTGGATGTGGCCCCTCTGTCGCTGGGTATCGAG 383
consensus_2811#3 GACCGGCGAGA--CGGCCGCGAC--CGCCACAA--GAGAATTGTGTGGAAAAGCAGTCCA 355
** * * ** * ** * * ** * *
consensus_2811#0 CCGACGGCTGCAGCCATCGCATACGGTCTGGACAAAGGCAAGTCTGGAGAACGCAACGTC 672
consensus_2811#1 CCGACGGCTGCAGCCATCGCGTACGGTCTGGACAATGGCAAGTCGGCGGAACGCAACGTC 710
consensus_2811#2 ACAGCAGGAGGAGTCATGACG---GCCCTGATTAAACGCAACACCACCATCCCCACCAAG 440
consensus_2811#3 AAAATCCACGGTGTTTGTACA-GCGCCCC---CAGGCGCCACCCCCCGAGCCCCCGCAGC 411
* * * * * * ** * * * * *
consensus_2811#0 CTGATCTTTGACCTGNGAGGAGGCACCTTTGACGTGTCCACCCTGACCATTGAAGACGGT 732
consensus_2811#1 CTGATCTTTGACCTGGGAGGAGGCACCTTTGACGTGTCCATCCTGACCATTGAAGACGGT 770
consensus_2811#2 CAGACCCAGATCTTCAGCACCTATGCAGACAACCAGCCGGGGGTCCTCATCCAAGT--GT 498
consensus_2811#3 AAGAATGGTCTCCGGAGCCCCAAGCCAAACAGGGAGCCCTGGGCACGTGCCCC-GCCACA 470
** * * * * * *
consensus_2811#0 ATCTTTGAGGTCAAAGCCACGGCTGGAGACACTCA-CCTGGGTGGAGAGGACTTTGACAA 791
consensus_2811#1 ATCTTTGAGGTCAAAGCCACGGCTGGAGACACTCA-CCTGGGTGGAGAGGACTTTGACAA 829
consensus_2811#2 ATGAAGGAGAA-AGAGCCATGACCAAGGACAACAA-CCTCC-TGGGCAAGTTTGAGCTTG 555
consensus_2811#3 AGACGGGGGAGCCGACTCTCCACCAGCGGGAAGAATCCTCCACCGAGGGGCCCATGCCGT 530
* * * * * * * * * *** * * *
consensus_2811#0 CCGCATGGTGAACCACTTTGTGGAGGAATTCAAGAGGAAGCAGAAGAAGGACATCAGCCA 851
consensus_2811#1 CCGCATGGTGAACCACTTTGTGGAGGAATTCAAGCGGAAGCAG----------------- 872
consensus_2811#2 CGGGCCTCCCGGCTGCTCCCCGAGGGGGTCCGCAG------------------------- 590
consensus_2811#3 CG---------------------------------------------------------- 532
*
consensus_2811#0 GAACAAGAGAGCCCTGAGGAGGTTGCGCACAGCTTGTGAGAGGGCCAAGAGAACCCTGTC 911
consensus_2811#1 ------------------------------------------------------------
consensus_2811#2 ------------------------------------------------------------
consensus_2811#3 ------------------------------------------------------------
consensus_2811#0 CTCCAGCACCCAGGCCAGCATTGAGATCGATTCACTGTTTGAGGGCATCGACTTCTACAC 971
consensus_2811#1 ------------------------------------------------------------
consensus_2811#2 ------------------------------------------------------------
consensus_2811#3 ------------------------------------------------------------
consensus_2811#0 CTCCATCACCAGGGCTCGTTTTGAGGAGCTGTGCGGTGACCTTTTCAGAGGAACTCTGGA 1031
consensus_2811#1 ------------------------------------------------------------
consensus_2811#2 ------------------------------------------------------------
consensus_2811#3 ------------------------------------------------------------
consensus_2811#0 TC 1033
consensus_2811#1 --
consensus_2811#2 --
consensus_2811#3 --
|
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |