|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2818#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 587 fasta sequence
[CGAGGTTTACCACGTTGGTGGCCTTCGTTCCTGGCTCACCGCTGTTCGCTTAGATTTCTTCCGAATAAGTCGGTCAGGAATATTCACAATGGCTTTCAAAGACACCGGTAAAGCACCTGTGGAGACCGAGGTGGCCATTCACCGCATCCGCATCACCCTCACCAGCCGCAATGTCAAATCTCTGGAGAAGGTCTGTGCCGACTTGATCCGAGGGGCCAAAGAGAAGAACCTGAAGGTGAAGGGACCGGTCCGCATGCCAACAAAGACTCTGCGCATCACCACCAGAAAGACCCCCTGTGGTGAAGGATCCAAGACCTGGGATCGCTTTCAGATGAGGATCCACAAGCGTCTGATTGATCTGCACAGTCCTTCCGAGATCGTCAAGCAGATCACCTCCATCAGCATCGAGCCTGGTGTCGAGGTGGAAGTCACCATCGCAGATGCATAAACGCTGCAGATGAATGAATAAAGATGAATGAAAACTGGCGCCTCTGTTGTGAATAAAGTCAGAGTGGATGAGATGAATAAAGAGATCAATCTGTTAGAACATTAGCAGGTCGAAATCCAACACTTCATTTCATCAAGAT]
[+] EMBL FR0056202 [CGAGGTTTACCACGTTGGTGGCCTTCGTTCCTGGCTCACCGCTGTTCGCTTAGATTTCTTCCGAATAAGTCGGTCAGGAATATTCACAATGGGTTTCAGAGACACCGGGAAAGCACCTGTGGCGACCGAGGTGGCCATTCACCGCATCCGCATCAGCCTCACGAGCCGCAATGTCAAATCTCTGGAGAAGGTCTGTGCCGACTTGATCCGAGGGGCCAAGGAGAAGA ]
[+] EMBL BU807840 [ TTTACCACGTTGGTGGCCTTCGTTCCTGGCTCACCGCTGTTCGCTTAGATTTCTTCCGAATAAGTCGGTCAGGAATATTCACAATGGCTTTCAAAGACACCGGTAAAGCACCTGTGGAGACCGAGGTGGCCATTCACCGCATCCGCATCACCCTCACCAGCCGCAATGTCAAATCTCTGGAGAAGGTCTGTGCCGACTTGATCCGAGGGGCCAAAGAGAAGAACCTGAAGGTGAAGGGACCGGTCCGCATGCCAACAAAGACTCTGCGCATCACCACCAGAAAGACCCCCTGTGGTGAAGGATCCAAGACCTGGGATCGCTTTCAGATGAGGATCCACAAGCGTCTGATTGATCTGCACAGTCCTTCCGAGATCGTCAAGCAGATCACCTCCATCAGCATCGAGCCTGGTGTCGAGGTGGAAGTCACCATCGCAGATGCATAAACGCTGCAGATGAATGAATAAAGATGAATGAAAACTGGCGCCTCTGTTGTGAATAAAGTCAGAGTGGATGAGATGAATAAAGAGATCAATCTGTTAGAACATTAGCAGGTCGAAATCCAACACTTCATTTCATCAAGAT]
[-] EMBL CA588693 [ GCCTTCGTTCCTGGCTCACCGCTGTTCGCTTAGATTTCTTCCGAATAAGTCGGTCAGGAATATTCACAATGGCTTTCAAAGACACCGGTAAAGCACCTGTGGAGACCGAGGTGGCCATTCACCGCATCCGCATCACCCTCACCAGCCGCAATGTCAAATCTCTGGAGAAGGTCTGTGCCGACTTGATCCGAGGGGCCAAAGAGAAGAACCTGAAGGTGAAGGGACCGGTCCGCATGCCAACAAAGACTCTGCGCATCACCACCAGAAAGACCCCCTGTGGTGAAGGATCCAAGACCTGGGATCGCTTTCAGATGAGGATCCACAAGCGTCTGATTGATCTGCACAGTCCTTCCG ]
[+] EMBL CA330819 [ CGTTCCTGGCTCACCGCTGTTCGCTTAGATTTCTTCCGAATAAGTCGGTCAGGAATATTCACAATGGCTTTCAAAGACACCGGTAAAGCACCTGTGGAGACCGAGGTGGCCATTCACCGCATCCGCATCACCCTCACCAGCCGCAATGTCAAATCTCTGGAGAAGGTCTGTGCCGACTTGATCCGAGGGGCCAAAGAGAAGAACCTGAAGGTGAAGGGACCGGTCCGCATGCCAACAAAGACTCTGCGCATCACCACCAGAAAGACCCCCTGTGGTGAAGGATCCAAGACCTGGGATCGCTTTCAGATGAGGATCCACAAGCGTCTGATTGATCTGCACAGTCCTTCTGAGATCGTCAAGCAGATCACCTCCATCAGCATCGAGCCTGGTGTCGAGGTGGAAGTCACCATCGCAGATGCATAAACGCTGCAGATGAATGAATAAAGAT ]
[+] EMBL FR0055586 [ CGTTCCTGGCTCACCGCTGTTCGCTTAGATTTCTTCCGAATAAGTCGGTCAGGAATATTCACAATGGCTTTCAAAGACACCGGTAAAGCACCTGTGGCGACCGAGGTGGCCATTCACCGCATCCGCATCACCCTCACCAGCCGCAATGTCAAATCTCTGGAGAAGGTCTGTGCCGACTTGATCCGAGGGGCCAAAGTGAAGACTCTGAAGGTGGACGGACCGGTCCGCATGCCAACAAAGACTCTGCGCATCACCACCAGAAAGACCCCCTGTGGTGAAGGATCCAAGACCTGGGATCGCTTTCAGATGAGGATCCACATGCGTCTGATTGATCTGCACAGTCCTTCCGAGATCGTCAAGCAGATCACCTCCATCAGCATCGAGCCTGGTGTCTAGGTGGGAGTCACCATCGCAGATGCAT ]
[+] EMBL CA333615 [ TTCCTGGCTCACCGCTGTTCGCTTAGATTTCTTCCGAATAAGTCGGTCAGGAATATTCACAATGGCTTTCAAAGACACCGGTAAAGCACCTGTGGAGACCGAGGTGGCCATTCACCGCATCCGCATCACCCTCACCAGCCGCAATGTCAAATCTCTGGAGAAGGTCTGTGCCAACTTGATCCGAGGGGCCAAAGAGAAGAACCTGAAGGTGAAGGGACCGGTCCGCATGCCAACAAAGACTCTGCGCATCACCACCAGAAAGACCCCCTGTGGTGAAGGATCCAAGACCTGGGATCGCTTTCAGATGAGGATCCACAAGCGTCTGATTGATCTGCACAGTCCTTCTGAGATCGTCAAGCAGATCACCTCCATCAGCATCGAGCCTGGTGTCGAGGTGGAAGTCACCATCGCAGATGCATAAACGCTGCAGATGAATGAATAAAGATGAATG ]
[+] EMBL CA845211 [ TCCTGGCTCACCGCTGTTCGCTTAGATTTCTTCCGAATAAGTCGGTCAGGAATATTCACAATGGCTTTCAAAGACACCGGTAAAGCACCTGTGGAGACCGAGGTGGCCATTCACCGCATCCGCATCACCCTCACCAGCCGCAATGTCAAATCTCTGGAGAAGGTCTGTGCCGACTTGATCCGAGGGGCCAAAGAGAAGAACCTGAAGGTGAAGGGACCGGTCCGCATGCCAACAAAGACTCTGCGCATCACCACCAGAAAGACCCCCTGTGGTGAAGGATCCAAGACCTGGGATCGCTTTCAGATGAGGATCCACAAGCGTCTGATTGATCTGCACAGTCCTTCCGAGATCGTCAAGCAGATCACCTCCATCAGCATCGAGCCTGGTGTCGAGGTGGAAGTCACCATCGCAGATGCATAAACGCTGCAGA ]
[+] EMBL FR0055497 [ cTCCTGGCTCACCGCTGTTCGCTTAGATTTCTTCCGAATAAGTCGGTCAGGACTATTCACAATGGCTTTCACAGACACCGGTAAAGCACCTGTGGCGACCGAGGTGGCCATTCACCGCATCCGCATCACCCTCACCAGCCGCACTGTCAAGTCTCTGGAGAAGGTCTGTGCCGACTTGGTCCGAGGTGCCAGAGAGAAGAACCTG ]
[+] EMBL FR0055546 [ ACCGCTGTTCGCTTAGATTTCTTCCGAATAAGTCGGTCAGGAATATTCACAATGGCTTTCAAAGACACCGGTAAAGCACCTGTGGCGACCGAGGTGGCCATTCACCGCATCCGCATCACCCTCACCAGTCGCAATGTCAAATCTCTGGAGAAGGTCTGTGCCGACTTGATCAGAGGGGCCAATGAGAAGAACCTGAAGGTGAAGGGACCGGTCCGCATGCCAACAGAGACTCTGCGCATCACCAACAGTAAGACCCCCTGTGGTGAAGGATCCAAGACCTGGGATCGCTTTCAGATGAGGATCCACATGCGTCTGATTGCTCTGCACAGTCCTTCCGAGATCGTCAAGCAGATCACCTCCATCAGCATCGAGCCTGGTGTCGACGTGGTAGTCACCA ]
[+] EMBL FR0056080 [ ATTTCTTCCGAATAAGTCGGTCAGGAATATTCACAATGGCTTTCAAAGACACCGGTAAAGCACCTGTGGAGACCGAGGTGGCCATTCACCGCATCCGCATCACCCTCACCAGCCGCAATGTCAAATCTCTGGAGAAGGTCTGTGCCGACTTGATCCGAGGGGCCAAAGAGAAGAACCTGAAGGTGAAGGGACCGGTCCGCATGCCAACAAAGACTCTGCGCATCACCACCAGAAAGACCCCCTGTGGTGAAGGATCCAAGACCTGGGATCGCTTTCAGATGAGGATCCACAAGCGTCTGATTGATCTGCACAGTCCTTCCGAGATCGTCAAGCAGATCACCTCCATCAGCATCGAGCCTGGTGTCGAGGTGGGAGTCACCATCGCAGATGCATAAACGCTGCAGATGA ]
[+] EMBL FR0055374 [ gTTTCTTCCGAGTAAGTCGGTCAGGAATATTCACAGTGGCTTTCAAAGACACCGGTAAAGCACCTGTGGAGACCGAGGTGGCCATTCACCGCATCCGCATCACCCTCACCAGCCGCAATGTCAAATCTCTGGAGAAGGTCTGTGCCGACTTGATCCGAGGGGCCAAAGAGAAGAACCTGAAGGTGAAGGGACCGGTCCGCATGCCAACAGAGACTCTGCGCATCACCACCAGAAAGACCCCCTGTGGTGAAGGATCCAAGACCTGGGATCGCTTTCAGATGAGGATCCACAGGCGTCTGATTGATCTGCACAGTCCTTCCGAGATCGTCAAGCAGATCACCTCCATCAGCATCGAGCCTGGTGTCGAGGTGGAAGTCACCATCGGAGATGCATA ]
[+] EMBL FR0058045 [ AAGTCGGTCAGGAATATTCACAATGGCTTTCAAAGACACCGGTAAAGCACCTGTGGAGACCGAGGTGGCCATTCACCGCATCCGCATCACCCTCACCAGCCGCAATGTCAAATCTCTGGAGAAGGTCTGTGCCGACTTGATCCGAGGGGCCAAAGAGAAGAACCTGAAGGTGAAGGGACCGGTCCGCATGCCAACAAAGACTCTGCGCATCACCACCAGAAAGACCCCCTGTGGTGAAGGATCCAAGACCTGGGATCGCTTTCAGATGAGGATCCACAAGCGTCTGATTGATCTGCACAGTCCTTCCGAGATCGTCAAGCAGATCACCTCCATCAGCATCG ]
[+] EMBL FR0056262 [ GAATATTCACAATGGCTTTCAAAGACACCGGTAAAGCACCTGTGGAGACCGAGGTGGCCATTCACCGCATCCGCATCACCCTCACCAGCCGCAATGTCAAATCTCTGGAGAAGGTCTGTGCCGACTTGATCCGAGGGGCCAAAGAGAAGAACCTGAAGGTGAAGGGACCGGTCCGCATGCCAACAAAGACTCTGCGCATCACCACCAGAAAGACCCCCTGTGGTGAAGGATCCAAGACCTGGGATCGCTTTCAGATGAGGATCCACAAGCGTCTGATTGATCTGCACAGTCCTTCCGAGATCGTCAAGCAGATC ]
[+] EMBL FR0055607 [ TATTCACAGTGGCTTTCATAGACACCGGTAAAGCACCTGTGGCGACCGAGGTGGCCATTCACCGCATCCGCATCACCCTCACCAGTCGCATTGTCAAATCTCTGAAGAAGGTCTGTGCCGACTTGATCCGAAGGGCCAATGAGAAGAACCTGAAGGTGAAGGGACCGGTCCGCATGCCAACAAAGACTCTGCGCATCACTACCAGAAAGACCCCCTGTGGTGAAGGATCCAAGACCTGGGATCGCTTTCAGATGAGGATCCACAAGCGTCTGATTGATCTGCACAGTCCTTCCGAGATCGTCAAGCAGATCACCTCTATCAGCATCGAGCCTGGTGTCGAGGTGGAAGTCACCATCGCAGATGCATAAACGTTGCAGATGAGTGACTA ]
[+] EMBL CA845343 [ AAGACACCGGTAAAGCACCTGTGGAGACCTTTGTGCCCATTCACCGCATCCGCATCACCCTCACCAGCCGCAATGTCAAATCTCTGGAGAAGGTCTGTGCCGACTTGATCCGAGGGGCCAAAGAGAAGAACCTGAAGGTGAAGGGACCGGTCCGCATGCCAACAAAGACTCTGCGCATCACCACCAGAAAGACCCCCTGTGGTGAAGGATCCAAGACCTGGGATCGCTTTCAGATGATGATCCACAAGCGTCTGATTGATCTGCACAGTCCTTCCGAGATCGTCAAGCAGATCACCTCCATCAGCATCGAGCCTGGTGTCGAGGTGGAAGTCACCATCGCAGATGCATAAACGCTGCAGATGAATGAATAAAGATGAATGAAA ]
consensusID : consensus_2818#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 468 fasta sequence
[CTCACCGCTGTTCGCTTAGATTTCTTCCGAATAAGTCGGTCAGGAATATTCACAATGGCTTTCAAAGACACCGGTAAAGCACCTGTGGAGACCGAGGTGGCCATTCACCGCATCCGCATCACCCTCACCAGCCGCAATGTCAAATCTCTGGAGAAGGTCTGTGCCGACTTGATCCGAGGGGCCAAAGAGAAGAACCTGAAGGTGAAGGGACCGGTCCGCATGCCAACAAAGACTCTGCGCATCACCACCAGAAAGAC-CCCCTGTGGTGAAGGATCCAAGACCTGGGATCGCTTTCAGATGAGGATCCACAAGCGTCTGATTGATCTGCACAGTCCTTCTGAGATCGTCAAG-CAGATCACCTCCATCAGCATCGAGCCTGGTGTCGAGGTGGAAGTCACCATCGCAGATGCATAAACGCTGCAGATGAATGAATAAAGATGAATGAAAACTGGGAAAAAAAAAANAAAA]
[+] EMBL FR0056938 [CTCACCGCTGTTCGCTTAGATTTCTTCCGAATAAGTCGGTCAGGAATATTCACAATGGCTTTCAAAGACACCGGTAAAGCACCTGTGGAGACCGAGGTGGCCATTCACCGCATCCGCATCACCCTCACCAGCCGCAATGTCAAATCTCTGGAGAAGGTCTGTGCCGACTTGATCCGAGGGGCCAAAGAGAAGAACCTGAAGGTGAAGGGACCGGTCCGCATGCCAACAAAGACTCTGCGCATCACCACCAGAAAGAC CCCCTGTGGTGAAGGATCCAAGACCTGGGATCGCTTTCAGATGAGGATCCACAAGCGTCTGATTGATCTGCACAGTCCTTCTGAGATCGTCAAG CAGATCACCTCCATCAGCATCGAGCCTGGTGTCGAGGTGGAAGTCACCATCGCAGATGCATAAACGCTGCAGATGAATGAATAAAGATGAATGAAAACTGGGAAAAAAAAAANAAAA]
[+] EMBL CA333362 [ TTAGATTTCTTCCGAATAAGTCGGTCAGGAATATTCACAATGGCTTTCAAAGACACCGGTAAAGCACCTGTGGAGACCGAGGTGGCCATTCACCGCATCCGCATCACCCTCACCAGCCGCAATGTCAAATCTCTGGAGAAGGTCTGTGCCGACTTGATCCGAGGGGCCAAAGAGAAGAACCTGAAGGTGAAGGGACCGGTCCGCATGCCAACAAAGACTCTGCGCATCACCACCAGAAAGAC CCCCTGTGGTGAAGGATCCAAGACCTGGGATCGCTTTCAGATGAGGATCCACAAGCGTCTGATTGATCTGCACAGTCCTTCTGAGATCGTCAAG CAGATCACCTCCATCAGCATCGAGCCTGGTGTCGAGGTGGAAGTCACCATCGCAGATGCATAAACGCTGCAGATGAATGAATAAAGATGAATGAAAA ]
[+] EMBL CA845502 [ GGTCAGG ATATTC CAATGGCTTTCAAAGACACCGGTAAAGCACCTGTGGAGACCGAGGTGGCCATTCACCGCATCCGCATCACCCTCACCAGCCGCAATGTCAAATCTCTGGAGAAGGTCTGTGCCGACTTGATCCGAGGGGCCAAAGAGAAGAACCTGAAGGTGAAGGGACCGGTCCGCATGCCAACAAAGACTCTGCGCATCACCACCAGAAAGACTCTCCTGTGGTGAAGGATCCAAGACCTGGGATCGCTTTCAGATGAGGATCCACAAGCGTCTGATTGATCTGCACAGTCCTTCTGAGATCGTCAAG CAGATCACCTCCATCAGCATCGAGCCTGGTGTCGAGGTGGAAGTCACCATTGCAGATGCATAAACGCTGCAGATGAATGAATAAAGATGAATGAAAAC ]
[-] EMBL CA588847 [ aattcgGCACGAGTGGAGACCGAGGTGGCCATTCACCGCATCCGCATCACCCTCACCAGCCGCAATGTCAAATCTCTGGAGAAGGTCTGTGCCGACTTGATCCGAGGGGCCAAAGAGAAGAACCTGAAGGTGAAGGGACCGGTCCGCATGCCAA ]
[+] EMBL CA845546 [ CACCGCATCCGCATCACCCTCACCAGCCGCAATGTCAAATCTCTGGAGAAGGTCTGTGCCGACTTGATCCGAGGGGCCAAAGAGAAGAACCTGAAGGTGAAGGGACCGGTCCGCATGCCAACAAAGACTCTGCGCATCACCACCAGAAAGAC CCCCTGTGGTGAAGGATCCAAGACCTGGGATCGCTTTCAGATGAGTCT CACAAGCGTCTGATTGATCTGCACAGTCCTTCTGAGATCGTCAAG CAGATCACCTCCATCAGCATCGAGCCTGGTGTCGAGGTGGAAGTCACCATTGCAGATGCATAAACGCTGCAGATGAATGAATAAAGATGAATGAAAACT ]
[+] EMBL CA330402 [ CAAGTTAGATCACCTCCATCAGCATCGAGCCTGGTGTCGAGGTGGAAGTCACCATCGCAGATGCATAAACGCTGCAGATGAATGAATAAAGATGAATG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2818#0 CGAGGTTTACCACGTTGGTGGCCTTCGTTCCTGGCTCACCGCTGTTCGCTTAGATTTCTT 60
consensus_2818#1 ----------------------------------CTCACCGCTGTTCGCTTAGATTTCTT 26
**************************
consensus_2818#0 CCGAATAAGTCGGTCAGGAATATTCACAATGGCTTTCAAAGACACCGGTAAAGCACCTGT 120
consensus_2818#1 CCGAATAAGTCGGTCAGGAATATTCACAATGGCTTTCAAAGACACCGGTAAAGCACCTGT 86
************************************************************
consensus_2818#0 GGAGACCGAGGTGGCCATTCACCGCATCCGCATCACCCTCACCAGCCGCAATGTCAAATC 180
consensus_2818#1 GGAGACCGAGGTGGCCATTCACCGCATCCGCATCACCCTCACCAGCCGCAATGTCAAATC 146
************************************************************
consensus_2818#0 TCTGGAGAAGGTCTGTGCCGACTTGATCCGAGGGGCCAAAGAGAAGAACCTGAAGGTGAA 240
consensus_2818#1 TCTGGAGAAGGTCTGTGCCGACTTGATCCGAGGGGCCAAAGAGAAGAACCTGAAGGTGAA 206
************************************************************
consensus_2818#0 GGGACCGGTCCGCATGCCAACAAAGACTCTGCGCATCACCACCAGAAAGACCCCCTGTGG 300
consensus_2818#1 GGGACCGGTCCGCATGCCAACAAAGACTCTGCGCATCACCACCAGAAAGACCCCCTGTGG 266
************************************************************
consensus_2818#0 TGAAGGATCCAAGACCTGGGATCGCTTTCAGATGAGGATCCACAAGCGTCTGATTGATCT 360
consensus_2818#1 TGAAGGATCCAAGACCTGGGATCGCTTTCAGATGAGGATCCACAAGCGTCTGATTGATCT 326
************************************************************
consensus_2818#0 GCACAGTCCTTCCGAGATCGTCAAGCAGATCACCTCCATCAGCATCGAGCCTGGTGTCGA 420
consensus_2818#1 GCACAGTCCTTCTGAGATCGTCAAGCAGATCACCTCCATCAGCATCGAGCCTGGTGTCGA 386
************ ***********************************************
consensus_2818#0 GGTGGAAGTCACCATCGCAGATGCATAAACGCTGCAGATGAATGAATAAAGATGAATGAA 480
consensus_2818#1 GGTGGAAGTCACCATCGCAGATGCATAAACGCTGCAGATGAATGAATAAAGATGAATGAA 446
************************************************************
consensus_2818#0 AACTGGCGCCTCTGTTGTGAATAAAGTCAGAGTGGATGAGATGAATAAAGAGATCAATCT 540
consensus_2818#1 AACTGG----------GAAAAAAAAAANAAAA---------------------------- 468
****** * ** *** * *
consensus_2818#0 GTTAGAACATTAGCAGGTCGAAATCCAACACTTCATTTCATCAAGAT 587
consensus_2818#1 -----------------------------------------------
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |