Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 2856 cluster # 2856       Sequences # 29       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2856#0 length = 732 sequences # 25  
consensus_2856#1 length = 724 sequences # 1  
consensus_2856#2 length = 251 sequences # 3  

consensusID : consensus_2856#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 25
consensus length = 732
fasta sequence
                              [ACCAAAAATTGGGACCGGGGCCCCCCCCGGGGTTTTTTTTTTTTTTTTTTCCAAGGAAATTGTCCAAATTTATTTGTTAGAAAGCAAACGCGTTTAACGGTTGGACTTGGCAACTCTCTCCAACTCGTCCTTCTTCTTGATCGCGTAAGAGTTAGATGAGCCCTTGGCTGCATTGAT-CAGCTCATCGGCCAGACACTCTGCAATCGTCTTGATGTTCCTGAACGCAGCTTCTCGTGCTCCTGTGCACAGCAGCCAGATGGCCTGGTTGACTCTCCGGAGGGGGGACACATCCACAGCCTGCCTCCTGACCGTACCTGCACGACCAATACGGGTGGAATCCTCACGGGGCCCGCTGTTGATGATGGCATTGACCAAGACCTGGAGGGGATTCTCTCCAGTCAGCAGATGGATGATCTCGAAGGCGTGCTTGACAATGCGTACAGTCATCAGTTTCTTGCCGTTGTTGCGGCCGTGCATCATCATGG-AGTTGGTCAGACGCTCCACGATGGGACACTGGGCCTTGCGGAAGCGTTTGGCAGCATAACGTCCTGCAGAGTGTGGCAGGTACTTGGCGTATTTCTCCTTCACAGCAATGTAATCCTGCAGGGAGATGTCATTAATCTGGACATCATCGGTGCTCCATTTGCCAAAGAGCTTAATCTCAGGGGTCTCAGCCACGGCCGTGGTATTGTCCCAGTCAGTCATGCTGTCTGCCGTTCTGTACCACACTTC]

[-] EMBL FR0057212            [ACCAAAAATTGGTACCGGGGCCCCCCCCGGGGTTTTTTTTTTTTTTTTT      GAAATTGTCCAAATTTATTTGTTAGAAAGCAAACGCGTTTAACGGTTGGACTTGGCAACTCTCTCCAACTCGTCCTTCTTCTTGATCGCGTAAGAGTTAGATGAGCCCTTGGCTGCATTGAT CAGCTCATCGGCCAGACACTCTGCAATCGTCTTGATGTTCCTGAACGCAGCTTCTCGTGCTCCTGTGCACAGCAGCCAGATGGCCTGGTTGACTCTCCGGAGGGGGGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL FR0057202            [ CCAAAACTTGGGACCGGGGCCCCCCCCGGGGCTTTTTTTCTTTTTTTT      GAAATTGTCCAAATTTATTTGTTAGAAAGCAAACGCGTTTAACGGTTGGACTTGGCAACTCTCTCCAACTCGTCCTTCTTCTTGATCGCGTAAGAGTTAGATGAGCCCTTGGCTGCATTGAT CAGCTCATCGGCCAGACACTCTGCAATCGTCTTGATGTTCCTGAACGCAGCTTCTCGTGCTCCTGTGCACAGCAGCCAGATGGCCTGGTTGACTCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL FR0057109            [                       CCTGGGGTTTTTTTTTTTTTTTTTTTTCCAAGGAAATTGTCCAAATTTATTTGTTAGAAAGCAAACGCGTTTAACGGTTGGACTTGGCAACTCTCTCCAACTCGTCCTTCTTCTTGATCGCGTAAGAGTTAGATGAGCCCTTGGCTGCATTGAT CAGCTCATCGGCCAGACACTCTGCAATCGTCTTGATGTTCCTGAACGCAGCTTCTCGTGCTCCTGTGCACAGCAGCCAGATGGCCTGGTTGACTCTCCGGAGGGGGGACACATCCACAGCCTGCCTCCTGACCGTACCTGCACGACCAATACGGGTGGAATCCTCACGGGGCCCGCTGTTGATGATGGCATTGACCAAGACCTGGAGGGGATTCTCTCCAGTCAGCAGATGGATGATCTCGAAGGCGTGCTTGACAATGCGTACAGTCATCAGTTTCTTGCCGTTGTTGCGGCCGTGCA                                                                                                                                                                                                                                                                 ]
[-] EMBL CA846820             [                                                 TCCAAGGAAATTGTCCAAATTTATTTGTTAGAAAGCAAACGCGTTTAACGGTTGGACTTGGCAACTCTCTCCAACTCGTCCTTCTTCTTGATCGCGTAAGAGTTAGATGAGCCCTTGGCTGCATTGAT CAGCTCATCGGCCAGACACTCTGCAATCGTCTTGATGTTCCTGAACGCAGCTTCTCGTGCTCCTGTGCACAGCAGCCAGATGGCCTGGTTGACTCTCCGGAGGGGGGACACATCCACAGCCTGCCTCCTGACCGTACCTGCACGACCAATACGGGTGGAATCCTCACGGGGCCCGCTGTTGATGATGGCATTGACCAAGACCTGGAGGGGATTCTCTCCAGTCAGCAGATGGATGATCTCGAAGGCGTGCTTGACAATGCGTACAGTCATCAGTTTCTTGCCGTTGTTGCGGCCGTGCATCATCATGG AGTTGGTCAGACGCTCCACGATGGGACACTGGGCCTTGCGGAAGCGTTTGGCAGCATAACGTCCTGCAGAGTGTGGCAGGTACTTGGCGTATTTCTCCTTCACAGCAATGTAATCCTGCAGGGAGATGTCATTAATCTGGACATCATCGGTGCTCgtgc                                                                                        ]
[+] EMBL CA329681             [                                                           TTGTCCAAATTTATTTGTTAGAAAGCAAACGCGTTTAACGGTTGGACTTGGCAACTCTCTCCAACTCGTCCTTCTTCTTGATCGCGTAAGAGTTAGATGAGCCCTTGGCTGCATTGAT CAGCTCATCGGCCAGACACTCTGCAATCGTCTTGATGTTCCTGAACGCAGCTTCTCGTGCTCCTGTGCACAGCAGCCAGATGGCCTGGTTGACTCTCCGGAGGGGGGACACATCCACAGCCTGCCTCCTGACCGTACCTGCACGACCAATACGGGTGGAATCCTCACGGGGCCCGCTGTTGATGATGGCATTGACCAAGACCTGGAGGGGATTCTCTCCAGTCAGCAGATGGATGATCTCGAAGGCGTGCTTGACAATGCGTACAGTCATCAGTTTCTTGCCGTTGTTGCGGCCGTGCATCATCATGG AGTTGGTCAGACGCTCCACGATGGGACACTGGGCCTTGCGGAAGCGTTTGGCAGCATAACGTCCTGCAGAGTGTGGCAGGTACTTGGCGTATTTCTCCTTCACAGCAATGTAATCCTGCAGGGAGATGTCATTAATCTGGACATCATCGGTGCTCCATTTGCCAAAGAGCTTAATCTCAGGGGTCTCAGCCACGGGCGTGGT                                             ]
[-] EMBL CA844933             [                                                           TTGTCCAAATTTATTTGTTAGAAAGCAAACGCGTTTAACGGTTGGACTTGGCAACTCTCTCCAACTCGTCCTTCTTCTTGATCGCGTAAGAGTTAGATGAGCCCTTGGCTGCATTGAT CAGCTCATCGGCCAGACACTCTGCAATCGTCTTGATGTTCCTGAACGCAGCTTCTCGTGCTCCTGTGCACAGCAGCCAGATGGCCTGGTTGACTCTCCGGAGGGGGGACACATCCACAGCCTGCCTCCTGACCGTACCTGCACGACCAATACGGGTGGAATCCTCACGGGGCCCGCTGTTGATGATGGCATTGACCAAGACCTGGAGGGGA                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CA332215             [                                                               CCAAATTTATTTGTTAAAAAGCAAACGCGTTTAACGGTTGGACTTGGCAACTCTCTCCAACTCGTCCTTCTTCTTGATCGCGTAAGAGTTAGATGAGCCCTTGGCTGCATTGAT CAGCTCATCGGCCAGACACTCTGCAATCGTCTTGATGGTCCTGAACGCAGCTTCTCGTGCTCCTGTGCACAGCAGCCAGATGGCCTGGTTGACTCTCCGGAGGGGGGACACATCCTCAGCCTGCCTCCTGACCGTACCTGCACGACCAATACGGGTGGAATCCTCACGGGGCCCGCTGGTGATGATGGCATTGACCAAGACCTGGAGGGGATTCTCTCCAGACAGCAGATGGATGATCTCGAAGGCGTGCTTGACAATGCGTACAGGCATCAGTTTCTTGCCGTTGGTGCGGCCGTGCATCATCATGG AGTTGGTCAGACGCTCCACGATGGGACACTGGGCCTTGCGGAAGCGTTTGGCAGCATAACGTCCTGCAGAGTGTGGCAGGTACTTGGCGTATTTCTCCTTCACAGCAATGTAATCCTGCAGGGAGATGTCATTAATCTGGACATCATCGGTGCTCCATTTGCCAAAGAGCTTAATCTCATGGGTCTC                                                            ]
[-] EMBL FR0056068            [                                                                                                 CGGTTTGACTTGGCAACTCTCTCCAACTCGTCTTTCTTCTTGATCGCGTAAGAGTTAGATGAGCCCTTGGCTGCATTGAT CAGCTCATCGGCCAGACACTCTGCAATCGTCTTGATGTTCCTGAACGCAGCTTCTCGTGCTCCTGTGCACAGCAGCCAGATGGCCTGGTTGACTCTCCGGAGGGGGGACACATCCACAGCCTGCCTCCTGACCGTACCTGCACGACCAATACGGGTGGAATCCTCACGGGGCCCGCTGTTGATGATGGCATTGACCAAGACCTGGAGGGGATTCTCTCCAGTCAGCAGATGGATGATCTCGAAGGCGTGCTTGACAATGCGTACAGTCATCAGTTTCTTGCCGTTGTTGCGGCCGTGCATCATCATGG AGTTGGTCAGACGCTCCACGATGGGACACTGGGCCTTGCGGAAGCGTTTGGCA                                                                                                                                                                                                  ]
[-] EMBL BU805686             [                                                                                                            GGCAACTCTCTCCAACTCGTCCTTCTTCTTGATCGCGTAAGAGTTAGATGAGCCCTTGGCTGCATTGAT CAGCTCATCGGCCAGACACTCTGCAATCGTCTTGATGTTCCTGAACGCAGCTTCTCGTGCTCCTGTGCACAGCAGCCAGATGGCCTGGTTGACTCTCCGGAGGGGGGACACATCCACAGCCTGCCTCCTGACCGTACCTGCACGACCAATACGGGTGGAATCCTCACGGGGCCCGCTGTTGATGATGGCATTGACCAAGACCTGGAGGGGATTCTCTCCAGTCAGCAGATGGATGATCTCGAAGGCGTGCTTGACAATGCGTACAGTCATCAGTTTCTTGCCGTTGTTGCGGCCGTGCATCATCATGG AGTTGGTCAGACGCTCCACGATGGGACACTGGGCCTTGCGGAAGCGTTTGGCAGCATAACGTCCTGCAGAGTGTGGCAGGTACTTGGCGTATTTCTCCTTCACAGCAATGTAATCCTGCAGGGAGATGTCATTAATCTGGACATCATCGGTGCTCCATTTGCCAAAGAGCTTAATCTCAGGGGTCTCAGCCACGGCCGTGGTATTGTCCCAGTCAGTCATGCTGTCTGCCGTTCTGTACCACACT  ]
[-] EMBL BU807885             [                                                                                                               AACTCTCTCCAACTCGTCCTTCTTCTTGATCGCGTAAGAGTTAGATGAGCCCTTGGCTGCATTGAT CAGCTCATCGGCCAGACACTCTGCAATCGTCTTGATGTTCCTGAACGCAGCTTCTCGTGCTCCTGTGCACAGCAGCCAGATGGCCTGGTTGACTCTCCGGAGGGGGGACACATCCACAGCCTGCCTCCTGACCGTACCTGCACGACCAATACGGGTGGAATCCTCACGGGGCCCGCTGTTGATGATGGCATTGACCAAGACCTGGAGGGGATTCTCTCCAGTCAGCAGATGGATGATCTCGAAGGCGTGCTTGACAATGCGTACAGTCATCAGTTTCTTGCCGTTGTTGCGGCCGTGCATCATCATGG AGTTGGTCAGACGCTCCACGATGGGACACTGGGCCTTGCGGAAGCGTTTGGCAGCATAACGTCCTGCAGAGTGTGGCAGGTACTTGGCGTATTTCTCCTTCACAGCAATGTAATCCTGCAGGGAGATGTCATTAATCTGGACATCATCGGTGCTCCATTTGCCAAAGAGCTTAATCTCAGGGGTCTCAGCCACGGCCGTGGTATTGTCCCAGTCAGTCATGCTGTCTGCCGTTCTGTACCACACTTC]
[-] EMBL CA330112             [                                                                                                               AACTCTCTCCAAGTAGTCATTCTTCTTGATAGCGTAAGAGTTAGATGAGCCCTTGGCTGCATTGAT CAGCTCATCGGCCAGACACTATGCAATCGTCTTGATGTTCCTGAAAGCAGCTTGTCGTGCTCCTGTGCACAGCAGCCAGATGGCCTGGTTGACTCTCCGGAGGGGGTTCACATCCTCAGCATACGTCGAGTTGGTGCTTc                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CA588959             [                                                                                                                  TCTCTCCAACTCGTCCTTCTTCTTGATCGCGTAAGAGTTAGATGAGCCCTTGGCTGCATTGAT CAGATCATCGGCCAGACACTATGCAATCGTCTTGATGTTCCTGAACGCAGCTTCTCGTGCTCCTGTGCACAGCAGCCAGATGCCCTGGTTGACTCTCCGGAGGGGGGACACATCCACAGCCTGCCTCTTGACCGTACCTGCACGACCAATACGGGTGGAATCCTCCCGGGGCCCGCTGTTGATGATGGCATTGACCAAGACCTGGAGGGGATTCTCTCCAGTCAGCAGATGGATGATCTCGAAGGCGTGCTTGACAATGCGTACAGTCATCAGTTTCTTGCCGTTGTTGCGGCCGTGCATCATCATGG AGTTGGTCAGACGCTCCACGATGGGACACTGGGCCTTGCGGAAGCGTTTGGCAGCATAACGTCCTGCAGAGTGTGGCAGGTACTCGGCGTATTTCTCCTTCTCAGCAATGTAATCCTGCAGGGAGATGTCATTAATCTGGACATCATCGGTGCTCCATTTGCCAAAGAGCTTAATCTCAGGGGTCT                                                             ]
[-] EMBL CA591284             [                                                                                                                     CTCCAACTCGTCCTTCTTCTTGATCGCGTAAGAGTTAGATGAGCCCTTGGCTGCATTGAT CAGCTCATCGGCCAGACACTCTGCAATCGTCTTGATGTTCCTGAACGCAGCTTCTCGTGCTCCTGTGCACAGCAGCCAGATGGCCTGGTTGACTCTCCGGAGGGGGGACACATCCACAGCCTGCCTCCTGACCGTACCTGCACGACCAATACGGGTGGAATCCTCACGGGGCCCGCTGTTGATGATGGCATTGACCAAGACCTGGAGGGGATCCTCTCCAGTCAGCAGATGGATGATCTCGAAGGCGTGCTTGACAATGCGTACAGTCATCAGTTTCTTGCCGTTGTTGCGGCCGTGCATCATCATGG AGTTGGTCAGACGCTCCACGATGGGACACTGGGCCTTGCGGAAGCGTTTGGCAGCATAACGTCCTGCAGAGTGTGGCAGGTACTTGGCGTATTTCTCCTTCACAGCAATGTAATCCTGCAGGGAGATGTCATTAATCTGGACATCATCGGTGCTCCATTTGCCAAAGAGCTTAATCTCAGGGGTCTCAGCCACGGCCGTGGTATTGTCCCAGTTAGTCATGCTGTCTGCCGTTCTGTACCACACTTC]
[+] EMBL CA588799             [                                                                                                                          ACTCGTCCTTCTTCTTGATCGCGTAAGAGTTAGATGAGCCCTTGGCTGCATTGAT CAGCTCATCGGCCAGACACTCTGCAATCGTCTTGATGTTCCTGAACGCAGCTTCTCGTGCTCCTGTGCACAGCAGCCAGATGGCCTGGTTGACTCTCCGGAGGGGGGACACATCCACAGCCTGCCTCCTGACCGTACCTGCACGACCAATACGGGTGGAATCCTCACGGGGCCCGCTGTTGATGATGGCATTGACCAAGACCTGGAGGGGATTCTCTCCAGTCAGCAGATGGATGATCTCGAAGGCGTGCTTGACAATGCGTACAGTCATCAGTTTCTTGCCGTTGTTGCGGCCGTGCATCATCATGG AGTTGGTCAGACGCTCCACGATGGGACACTGGGCCTTGCGGAAGCGTTTGGCAGCATAACGTCCTGCAGAGTGTGGCAGGT                                                                                                                                                                      ]
[+] EMBL CA588881             [                                                                                                                                     TTCTTGATCGCGTAAGAGTTAGATGAGCCCTTGGCTGCATTGAT CAGCTCATCGGCCAGACACTCTGCAATCGTCTTGATGTTCCTGAACGCAGCTTCTCGTGCTCCTGTGCACAGCAGCCAGATGGCCTGGTTGACTCTCCGGAGGGGGGACACATCCACAGCCTGCCTCCTGACCGTACCTGCACGACCAATACGGGTGGAATCCTCACGGGGCCCGCTGTTGATGATGGCATTGACCAAGACCTGGAGGGGATTCTCTCCAGTCAGCAGATGGATGATCT                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CA844919             [                                                                                                                                       CTTGATCGCGTAAGAGTTAGATGAGCCTTTGGCTGCATTGAT CAGCTCATCGGCCAGACACTCTGCAATCGTCTTGATGTTCCTGAACGCAGCTTCTCGTGCTCCTGTGCACAGCAGCCAGATGGCCTGGTTGACTCTCCGGAGGGGGGACACATCCACAGCCTGCCTCCTGACCGTACCTGCACGACCAATACGGGTGGAATCCTCACGGGGCCCGCTGTTGATGATGGCATTGACCAAGACCTGGAGGGGATTCTCTCCAGTCAGCAGATGGATGATCTCGAAGGCGTGCTTGACAATGCGTACAGTCATCAGTTTCTTGCCGTTGTTGCGGCCGTGCATCATCATGG AGTTGGTCAGACGCTCCACGATGGGACACTGGGCCTTGCGGAAGCGTTTGGCAGCATAACGTCCTGCAGAGTGTGGCAGGTACTTGGCGTATTTCTCCTTCACAGCAATGTAATCCTGCAGGGAGATGTCATTAATCTGGACATCATCGGTGCTCCATTTGCCAAAGAGCTTAATCTCAGGGGTCTCAGCCACGGCCGTGGTATT                                          ]
[+] EMBL CA588878             [                                                                                                                                     cctTTGAGCGCGTAAGAGTTAGATGAGCCCTTGGCTGCATTGAT CAGCTCATCGGCCAGACACTCTGCAATCGTCTTGATGTTCCTGAACGCAGCTTCTCGTGCTCCTGTGCACAGCAGCCAGATGGCCTGGTTGACTCTCCGGAGGGGGGACACATCCACAGCCTGCCTCCTGACCGTACCTGCACGACCAATACGGGTGGAATCCTCACGGGGCCCGCTGTTGATGATGGCATTGACCAAGACCTGGAGGGGATTCTCTCCAGTCAGCAGATGGATGATCTCGAAGGCGTGCTTGACAATGCGTACAGTCATCAGTTTCTTGCCGTTGTTGCGGCCGTGCATCATCATGG AGTTGGTCAGACGCTCCACGATGGGACACTGGGCCTTGCGGAAGCGTTTGGCAGCATAA                                                                                                                                                                                            ]
[-] EMBL FR0055913            [                                                                                                                                            TCGCGTAAGAGTTAGATGAGCCCTTGGCTGCATTGATCCAGCTCATCGCCCAGACACTCTGCAATCGTCGTGATGTTCCTGAACGCAGCTTCTCGTGCTCCTGTGCACAGCAGCCAGATGCCCTGGTTGACTCTCCGGAGGGGGGACACATCCACAGCCTGCCTCCTGACCGTACCTGCACGACCAATACGGGTGGAATCCTCACGGGGCCCGCTGTTGATGATGGCATTGACCAAGACCTGGAGGGGATTCTCTCCAGTCAGCAGATGGATGATCTCGAAGGCGTGCTTGACAATGCGTACAGTCATCAGTTTCTTGCCGTTGTTGCGGCCGTGCATCATCATGG AGTTGGTCAGACGCTCCACGATGGGACACTGGGCCTTGCGGAAGCGTTTGGCAGCATAACGTCCTGCAGAGTGTGGCAGGTACTTGGCGTATTTCTCCTTCACAGCAATGTA                                                                                                                                       ]
[-] EMBL CA844846             [                                                                                                                                                GTAAGAGTTAGATGAGCCCTTGGCTGCATTGAT CAGCTCATCGGCCAGACACTCTGCAATCGTCTTGATGTTCCTGAACGCAGCTTCTCGTGCTCCTGTGCACAGCAGCCAGATGGCCTGGTTGACTCTCCGGAGGGGGGACACATCCACAGCCTGCCTCCTGACCGTACCTGCACGACCAATACGGGTGGAATCCTCACGGGGCCCGCTGTTGATGATGGCATTGACCAAGACCTGGAGGGGATTCTCTCCAGTCAGCAGATGGATGATCTCGAAGGCGTGCTTGACAATGCGTACAGTCATCAGTTTCTTGCCGTTGTTGCGGCCGTGCATCATCATAA AGTTGGTCAGACGCTCCACGATGGGACACTGGGCCTTGCGGAAGCGTTTGGCAGCATAACGTCCTGCAGAGTGTGGCAGGTACTTGGCGTATTTCTCCTTCACAGCAATGTAATCCTGCAGGGAGATGTCATTAATCTGGACATCATCGGTGCTCCATTTGCCAAAGAGCTTAATCTCAGGGGTCTCAGCCACGGCCGTGGTA GGTCCCAGTCAGTCATG                          ]
[-] EMBL FR0055287            [                                                                                                                                                   AGAGTTAGATGAGCCCTTGGCTGCATTGCT CAGCTCATCGGCCAGACACTCTGCAATCGTCTTGATGTTCCTGAACGCAGCTTCTCGTGCTCCTGTGCACAGCAGCCAGATGGCCTGGTTGACTCTCCGGAGGGGTGACACATCCACAGCCTGCCTCCTGACCGTACCTGCACGACCAATACGGGTGGAATCCTCACGGGGCCCGCTGTTGATGATGGCATTGACCAAGACCTGGAGGGGATTCTCTCCAGTCAGCAGATGGATGATCTCGAAGGCGTGCTTGACAATGCGTACAGTCATCAGTTTCTTGCCGTTGTTGCGGCCGTGCATCATCATGG AGTTGGTCAGACGCTCCACGATGGGACACTGGGCCTTGCGGAAGCGTTTGGCAGCATAACGTCCTGCAGAGTGTGGCAGGTACTTGGCGTATTTCTCCTTCACAGCAATGTAATCCTGCAGGGAGATGTCATTAATCTGGACATCATCGGTGCGC                                                                                            ]
[-] EMBL FR0055854            [                                                                                                                                                                    TGGCTGCATTGAT CAGCTCATCGGCCAGACACTCTGCAATCGTCTTGATGTTCCTGAACGCAGCTTCTCGTGCTCCTGTGCACAGCAGCCAGATGGCCTGGTTGACTCTCCGGAGGGGGGACACATCCACAGCCTGCCTCCTGACCGTACCTGCACGACCAATACGGGTGGAATCCTCACGGGGCCCGCTGTTGATGATGGCATTGACCAAGACCTGGAGGGGATTCTCTCCAGTCAGCAGATGGATGATCTCGAAGGCGTGCTTGACAATGCGTACAGTCATCAGTTTCTTGCCGTTGTTGCGGCCGTGCATCATCATGG AGTTGGTCAGACGCTCCACGATGGGACACTGGGCCTTGCGGAAGCGTTTGGCAGCATAACGTCCTGCAGAGTGTGGCAGGTACTTGGCGTATTTCTCCTTCACAGCAATGTAATCCTGCAGGGAGATGTCATTA                                                                                                                 ]
[-] EMBL FR0055933            [                                                                                                                                                                                            GCCAGACACTCTGCAATCGTCTTGATGTTCCTGAACGCAGCTTCTCGTGCTCCTGTGCACAGCAGCCAGATGGCCTGGTTGACTCTCCGGAGGGGNGACACATCCACAGCCTGCCTCCTGACCGTACCTGCACGACCAATACGGGTGGAATCCTCACGGGGCCCGCTGTTGATGATGGCATTGACCAAGACCTGGAGGGGATTCTCTCCAGTCAGCAGATGGATGATCTCGAAGGCGTGCTTGACAATGCGTACAGTCATCAGTTTCTTGCCGTTGTTGCGGCCGTGCATCATCATGG AGTTGGTCAGACGCTCCACGATGGGACACTGGGCCTTGCGGAAGCGTTTGGCAGCATAACGTCCTGCAGAGTGTGGCAGGTACTTGGCGTATTTCTCCTTCACAGCAATGTAATCCTGCAGGGAGATGTCATTAATCTGGACATCATCGGTGCTCCATTTGCCAAAGAGCTTAATCTCAGGGGT                                                               ]
[-] EMBL FR0056132            [                                                                                                                                                                                              CAGACACTCTGCAATCGTCTTGATGTTCCTGAACGCAGCTTCTCGTGCTCCTGTGCACAGCAGCCAGATGGCCTGGTTGACTCTCCGGAGGGGGG CACATCCACAGCCTGCCTCCTGACCGTACTTGCACGACCAATACGGGTGGAATCCTCACGGGGCCCGCTGTTGATGATGGCATTGACCAAGACCTGGAGGGGATTCTCTCCAGTCAGCAGATGGATGATCTCGAAGGCGTGCTTGACAATGCGTACAGTCATCAGTTTCTTGCCGTTGTTGCGGCCGTGCATCATCATGG AGTTGGTCAGACGCTCCACGATGGGACACTGGGCCTTGCGGAAGCGTTTGGCAGCATAACGTCCTGCAGAGTGTGGCAGGTACTTGGCGTATTTCTCCTTCACAGCAATGTAATCCTGCAGGGAGATGTCATTAATCTGGACATCATCGGTGCTCCATTTGCCAAAGAGCTTAATCTCAGGGGTCTCAGCCACG                                                     ]
[-] EMBL FR0055636            [                                                                                                                                                                                                       TGCAATCGTCATGATGTNCCTGACCGCAGCTTCTCGTGCTCCTGTGCACAGCAGCCAGATGGCCTGGTTGACTCTCCGGAGGGGGGACACATCCACAGCCTGCCTCCTGACCGTACCTGCACGACCAATACGGGTGGAATCCTCACGGGGCCCGCTGTTGATGATGGCATTGACCAAGACCTGGAGGGGATTCTCTCCAGTCAGCAGATGGATGATCTCGAAGGCGTGCTTGACAATGCGTACAGTCATCAGTTTCTTGCCGTTGTTGCGGCCGTGCATCATCATGGAAGTTGGTCAGACGCTCCACGATGGGACACTGGGCCTTGCGGAAGCGTTTGGCAGCATAACGTCCTGCAGAGTGTGGCAGGTACTTGGCGTATTTCTCCTTCACAGCAATGTAATCCTGCAGGGAGATGTCATTAATCTGGACATCATCGGTGCTCCATTTGCCAAAGAGCTTAATCTCAGGGGTCT                                                             ]
[-] EMBL FR0058020            [                                                                                                                                                                                                                                                                                                CATCCACAGCCTGCCTCCTGACCGTACCTGCACGACCAATACGGGTGGAATCCTCACGGGGCCCGCTGTTGATGATGGCATTGACCAAGACCTGGAGGGGATTCTCTCCAGTCAGCAGATGGATGATCTCGAAGGCGTGCTTGACAATGCGTACAGTCATCAGTTTCTTGCCGTTGTTGCGGCCGTGCATCATCATGG AGTTGGTCAGACGCTCCACGATGGGACACTGGGCCTTGCGGAAGCGTTTGGCAGCATAACGTCCTGCAGAGTGTGGCAGGTACTTGGCGTATTTCTCCTTCACAGCAATGTAATCCTGCAGGGAGATGTCATTAATCTGGACATCATCGGTGCTCCATTTGCCAAAGAGCTTAATCTCAGGGGTCTCAGCCACGGCCGTGGTATTGTCCCAGT                                  ]


>consensus_2856#0 ACCAAAAATTGGGACCGGGGCCCCCCCCGGGGTTTTTTTTTTTTTTTTTTCCAAGGAAAT TGTCCAAATTTATTTGTTAGAAAGCAAACGCGTTTAACGGTTGGACTTGGCAACTCTCTC CAACTCGTCCTTCTTCTTGATCGCGTAAGAGTTAGATGAGCCCTTGGCTGCATTGATCAG CTCATCGGCCAGACACTCTGCAATCGTCTTGATGTTCCTGAACGCAGCTTCTCGTGCTCC TGTGCACAGCAGCCAGATGGCCTGGTTGACTCTCCGGAGGGGGGACACATCCACAGCCTG CCTCCTGACCGTACCTGCACGACCAATACGGGTGGAATCCTCACGGGGCCCGCTGTTGAT GATGGCATTGACCAAGACCTGGAGGGGATTCTCTCCAGTCAGCAGATGGATGATCTCGAA GGCGTGCTTGACAATGCGTACAGTCATCAGTTTCTTGCCGTTGTTGCGGCCGTGCATCAT CATGGAGTTGGTCAGACGCTCCACGATGGGACACTGGGCCTTGCGGAAGCGTTTGGCAGC ATAACGTCCTGCAGAGTGTGGCAGGTACTTGGCGTATTTCTCCTTCACAGCAATGTAATC CTGCAGGGAGATGTCATTAATCTGGACATCATCGGTGCTCCATTTGCCAAAGAGCTTAAT CTCAGGGGTCTCAGCCACGGCCGTGGTATTGTCCCAGTCAGTCATGCTGTCTGCCGTTCT GTACCACACTTC



consensusID : consensus_2856#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 724
fasta sequence
                              [CAGCACCAAGATGGCCTGGTTGCCTCTCGGGAGGGGGGACACATCCCCAGCCTGCCTCCTGACCGTACCTGCACGACCAATACGGGTGGAATCCTCACGGGGCCCGCTGTTGAGGAGGGCATGGACCAAGACCTGGAGGGGATTCTCTCCAGTCAGCAGATGGATGATCTCGAAGGCGTGCTTGACAATGCGTACAGTCATCAGTTTCTTGCCGTTGTTGCGGCCGTGCATCATCATGGAGTTGGTCAGACGCTCCACGATGGGACACTGGGCCTTGCGGAAGCGTTTGGCAGCATAACGTCCTGCAGAGTGTGGCAGGTACTTGGCGTATTTCTCCTTCACAGCAATGTAATCCTGCAGGGAGATGTCATTAATCTGGACATCATCGGTGCTCCATTTGCCAAAGAGCTTAATCTCAGGGGTTTCAGCCACGGCCGTGGTATTGTAACAGTCAGTCATGCTGCTCGTGCCGAATTCGGCACGAGCTCGTGCNGAATTCGGCACGAGCGGCACGAGCTCTGTTCGATGGTCCTTTTGTTCTACTTCTTGTCCATTTTAACAGCCAGAGGCCCAGTGTGTCCACTCACAGTGTGTGTCAGGAGCTCAGCACTACAGCTTCATTGTCAAACTCTGCACTTCCAACTGAAAAAGACAAACCACTTAGTAACAACAGCACAAACCAGGAGCCAGACCCGACTATTCTTTAGCGGCATTCCCATTGACC]

[-] EMBL CA588872             [CAGCACCAAGATGGCCTGGTTGCCTCTCGGGAGGGGGGACACATCCCCAGCCTGCCTCCTGACCGTACCTGCACGACCAATACGGGTGGAATCCTCACGGGGCCCGCTGTTGAGGAGGGCATGGACCAAGACCTGGAGGGGATTCTCTCCAGTCAGCAGATGGATGATCTCGAAGGCGTGCTTGACAATGCGTACAGTCATCAGTTTCTTGCCGTTGTTGCGGCCGTGCATCATCATGGAGTTGGTCAGACGCTCCACGATGGGACACTGGGCCTTGCGGAAGCGTTTGGCAGCATAACGTCCTGCAGAGTGTGGCAGGTACTTGGCGTATTTCTCCTTCACAGCAATGTAATCCTGCAGGGAGATGTCATTAATCTGGACATCATCGGTGCTCCATTTGCCAAAGAGCTTAATCTCAGGGGTTTCAGCCACGGCCGTGGTATTGTAACAGTCAGTCATGCTGCTCGTGCCGAATTCGGCACGAGCTCGTGCNGAATTCGGCACGAGCGGCACGAGCTCTGTTCGATGGTCCTTTTGTTCTACTTCTTGTCCATTTTAACAGCCAGAGGCCCAGTGTGTCCACTCACAGTGTGTGTCAGGAGCTCAGCACTACAGCTTCATTGTCAAACTCTGCACTTCCAACTGAAAAAGACAAACCACTTAGTAACAACAGCACAAACCAGGAGCCAGACCCGACTATTCTTTAGCGGCATTCCCATTGACC]


>consensus_2856#1 CAGCACCAAGATGGCCTGGTTGCCTCTCGGGAGGGGGGACACATCCCCAGCCTGCCTCCT GACCGTACCTGCACGACCAATACGGGTGGAATCCTCACGGGGCCCGCTGTTGAGGAGGGC ATGGACCAAGACCTGGAGGGGATTCTCTCCAGTCAGCAGATGGATGATCTCGAAGGCGTG CTTGACAATGCGTACAGTCATCAGTTTCTTGCCGTTGTTGCGGCCGTGCATCATCATGGA GTTGGTCAGACGCTCCACGATGGGACACTGGGCCTTGCGGAAGCGTTTGGCAGCATAACG TCCTGCAGAGTGTGGCAGGTACTTGGCGTATTTCTCCTTCACAGCAATGTAATCCTGCAG GGAGATGTCATTAATCTGGACATCATCGGTGCTCCATTTGCCAAAGAGCTTAATCTCAGG GGTTTCAGCCACGGCCGTGGTATTGTAACAGTCAGTCATGCTGCTCGTGCCGAATTCGGC ACGAGCTCGTGCNGAATTCGGCACGAGCGGCACGAGCTCTGTTCGATGGTCCTTTTGTTC TACTTCTTGTCCATTTTAACAGCCAGAGGCCCAGTGTGTCCACTCACAGTGTGTGTCAGG AGCTCAGCACTACAGCTTCATTGTCAAACTCTGCACTTCCAACTGAAAAAGACAAACCAC TTAGTAACAACAGCACAAACCAGGAGCCAGACCCGACTATTCTTTAGCGGCATTCCCATT GACC



consensusID : consensus_2856#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 251
fasta sequence
                              [GGAAATTGTCCAAATTTATTTGTTAGAAAGCAAACGCGTTTAACGGTTGGACTTGGCAACTCTCTCCAACTCGTCCTTCTTCTTGATCGCGTAAGAGTTAGATGAGCCCTTGGCTGCATTGATCAGCTCATCGGCCAGACACTCTGCAATCGTCTTGATGTTCCTGAACGCAGCTTCTCGTGCTCCTGTGCACAGCAGCCAGATGGCCTGGTTGACTCTCCGGAGGGGGGACACACTCGTGCCGAATTCGG]

[-] EMBL CA329949             [GGAAATTGTCCAAATTTATTTGTTAGAAAGCAAACGCGTTTAACGGTTGGACTTGGCAACTCTCTCCAACTCGTCCTTCTTCTTGATCGCGTAAGAGTTAGATGAGCCCTTGGCTGCATTGATCAGCTCATCGGCCAGACACTCTGCAATCGTCTTGATGTTCCTGAACGCAGCTTCTCGTGCTCCTGTGCACAGCAGCCAGATGGCCTGGTTGACTCTCCGGAGGGGGGACACACTCGTGCCGAATTCGG]
[-] EMBL CA330708             [GGAAATTGTCCAAATTTATTTGTTAGAAAGCAAACGCGTTTAACGGTTGGACTTGG                                                                                                                                                                                                   ]
[-] EMBL CA330215             [GGAAATTGTCCAAATTTATTTGTTAGAAAGCAAACGCGTTTAACGGTTGGACTTG                                                                                                                                                                                                    ]


>consensus_2856#2 GGAAATTGTCCAAATTTATTTGTTAGAAAGCAAACGCGTTTAACGGTTGGACTTGGCAAC TCTCTCCAACTCGTCCTTCTTCTTGATCGCGTAAGAGTTAGATGAGCCCTTGGCTGCATT GATCAGCTCATCGGCCAGACACTCTGCAATCGTCTTGATGTTCCTGAACGCAGCTTCTCG TGCTCCTGTGCACAGCAGCCAGATGGCCTGGTTGACTCTCCGGAGGGGGGACACACTCGT GCCGAATTCGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2856#0      ------------------------------------------------------------
consensus_2856#2      ------------------------------------------------------------
consensus_2856#1      CAGCACCAAGATGGCCTGGTTGCCTCTCGGGAGGGGGGACACATCCCCAGCCTGCCTCCT 60
                                                                                  

consensus_2856#0      -----------------------ACCAAAAATTGGGACCGGGGCCCCCCCCGGGGTTTTT 37
consensus_2856#2      ------------------------------------------------------------
consensus_2856#1      GACCGTACCTGCACGACCAATACGGGTGGAATCCTCACGGGGCCCGCTGTTGAGGAGGGC 120
                                                                                  

consensus_2856#0      TTTTTTTTTTTTTCCAAGGAAATTGTCCAAATTTATTTGTTAGAAAGC-----AAACGCG 92
consensus_2856#2      -----------------GGAAATTGTCCAAATTTATTTGTTAGAAAGC-----AAACGCG 38
consensus_2856#1      ATGGACCAAGACCTGGAGGGGATTCTCTCCAGTCAGCAGATGGATGATCTCGAAGGCGTG 180
                                       **  *** **   * * *   * * **         *  ** *

consensus_2856#0      TTTAACGGTTGGACTTGGCAACTCTCTCCAAC--TCGTCCTTCTTCTTGATCGCGTAAGA 150
consensus_2856#2      TTTAACGGTTGGACTTGGCAACTCTCTCCAAC--TCGTCCTTCTTCTTGATCGCGTAAGA 96
consensus_2856#1      CTTGACAATGCGTACAGTCATCAGTTTCTTGCCGTTGTTGCGGCCGTGCATCATCATGGA 240
                       ** **  *  *    * ** *  * **   *  * **        *  ***      **

consensus_2856#0      GTTAGATGAGCCCTTGGCTGCATTGATCAGCTCATCGGCCAGACACTCTGCAAT----CG 206
consensus_2856#2      GTTAGATGAGCCCTTGGCTGCATTGATCAGCTCATCGGCCAGACACTCTGCAAT----CG 152
consensus_2856#1      GTTGGTCAGACGCTCCACGATGGGACACTGGGCCTTGCGGAAGCGTTTGGCAGCATAACG 300
                      *** *     * **   *         * *  * * *   *  *  *  ***      **

consensus_2856#0      TCTTGATGTTCCTGAACGCAGCTTCTCGTGCTCCTG-TGCACAGCAGCCAGATGGCCTGG 265
consensus_2856#2      TCTTGATGTTCCTGAACGCAGCTTCTCGTGCTCCTG-TGCACAGCAGCCAGATGGCCTGG 211
consensus_2856#1      TCCTGCAGAGTGTGGCAGGTACTTGGCGTATTTCTCCTTCACAGCAATGTAATCCTGCAG 360
                      ** **  *    **   *   ***  ***  * **  * *******     **      *

consensus_2856#0      TTGACTCTCCGGAGGGGGGACA-CATCCACAGCCTGCCTCCTGACCGTACCTGCACGACC 324
consensus_2856#2      TTGACTCTCCGGAGGGGGGACA-CACTCGTG--CCGAATTCGG----------------- 251
consensus_2856#1      GGAGATGTCATTAATCTGGACATCATCGGTGCTCCATTTGCCAAAGAGCTTAATCTCAGG 420
                           * **   *    ***** **        *    * *                   

consensus_2856#0      AATACGGGTGGAATCCTCACGGGGCCCGCTGTTGATGATGGCATTGACCAAGACCTGGAG 384
consensus_2856#2      ------------------------------------------------------------
consensus_2856#1      GGTTTCAGCCACGGCCGTGGTATTGTAACAGTCAGTCATGCTGCTCGTGCCGAATTCGGC 480
                                                                                  

consensus_2856#0      GGGATTCTCTCCAGTCAGCAGATGGATGATCTCGAAGGCGTGCTTGACAATGCGTACAGT 444
consensus_2856#2      ------------------------------------------------------------
consensus_2856#1      ACGAGCTCGTGCNGAATTCGGCACGAGCGGCACGAGCTCTGTTCGATGGTCCTTTTGTTC 540
                                                                                  

consensus_2856#0      CATCAGTTTCTTGCCGTTGTTGCGGCCGTGCATCATCATGGAGTTGGTCAGACGCTCCAC 504
consensus_2856#2      ------------------------------------------------------------
consensus_2856#1      TACTTCTTGTCCATTTTAACAGCCAGAGGCCCAGTGTGTCCACTCACAGTGTGTGTCAGG 600
                                                                                  

consensus_2856#0      GATGGGACACTGGGCCTTGCGGAAGCGTTTGGCAGCATAACGTCCTGCAGAGTGTGGCAG 564
consensus_2856#2      ------------------------------------------------------------
consensus_2856#1      AGCTCAGCACTACAGCTTCATTGTCAAACTCTGCACTTCCAACTGAAAAAGACAAACCAC 660
                                                                                  

consensus_2856#0      GTACTTGGCGTATTTCTCCTTCACAGCAATGTAATCCTGCAGGGAGATGTCATTAATCTG 624
consensus_2856#2      ------------------------------------------------------------
consensus_2856#1      TTAGTAACAACAGCACAAACCAGGAGCCAGACCCGACTATTCTTTAGCGGCATTCCCATT 720
                                                                                  

consensus_2856#0      GACATCATCGGTGCTCCATTTGCCAAAGAGCTTAATCTCAGGGGTCTCAGCCACGGCCGT 684
consensus_2856#2      ------------------------------------------------------------
consensus_2856#1      GACC-------------------------------------------------------- 724
                                                                                  

consensus_2856#0      GGTATTGTCCCAGTCAGTCATGCTGTCTGCCGTTCTGTACCACACTTC 732
consensus_2856#2      ------------------------------------------------
consensus_2856#1      ------------------------------------------------
                                                                      




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)