These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_318#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence [GGACTGCGCTCGCTCAGACTCGCTGAAAACCTCTGTCCAAACAGGCCGGGGTGCAACATGGACTTCCAGGCGCGCCTCTTGAAGGTAGGCAATGACCTGCGGAAGGATGAGGTGCGAGCTCTGGTCTTTCTCTGCTCCGACATCCTGGGCTGCAACCCGGCCGCGGTGCAGTCGGCCGGTGACCTCTTCTCCCGCCTGTCCGACCAGGACCACCTCTCCGAGGAGCAGCCCCACCTGCTGGTGGAGCTGCTCGGCATCATCCAGCGCACTAAGCTGCTCCGGGATCACAATCTCCCCCGTACTGGAGCGCAGGACCTCATCTCCCCTTACAGGAAGCTGCTGTACTCTCTGTCTGAGGAGCTGACTGCTGATGACTTGAAGGACATAAAGTTCCTGTTAAACAATAAACTTCCACGTGGAAAACTGGAGGAAGTTACAACACTGGAGGTCTTCATGGAGCTGGAACACAGGGCCCTCATCAGTGACACTGACCTCGGGTTCCTGGAGAGCATCATTCAACCAGTCTGCCCAGTGCTGCTAGAAAAAATCAACCAGTTCAATGCACAGAACTCAGCAATGAATCATGGATTGGTGGCTCAGGAAAC] [+] EMBL CA591031 [GGACTGCGCTCGCTCAGACTCGCTGAAAACCTCTGTCCAAACAGGCCGGGGTGCAACATGGACTTCCAGGCGCGCCTCTTGAAGGTAGGCAATGACCTGCGGAAGGATGAGGTGCGAGCTCTGGTCTTTCTCTGCTCCGACATCCTGGGCTGCAACCCGGCCGCGGTGCAGTCGGCCGGTGACCTCTTCTCCCGCCTGTCCGACCAGGACCACCTCTCCGAGGAGCAGCCCCACCTGCTGGTGGAGCTGCTCGGCATCATCCAGCGCACTAAGCTGCTCCGGGATCACAATCTCCCCCGTACTGGAGCGCAGGACCTCATCTCCCCTTACAGGAAGCTGCTGTACTCTCTGTCTGAGGAGCTGACTGCTGATGACTTGAAGGACATAAAGTTCCTGTTAAACAATAAACTTCCACGTGGAAAACTGGAGGAAGTTACAACACTGGAGGTCTTCATGGAGCTGGAACACAGGGCCCTCATCAGTGACACTGACCTCGGGTTCCTGGAGAGCATCATTCAACCAGTCTGCCCAGTGCTGCTAGAAAAAATCAACCAGTTCAATGCACAGAACTCAGCAATGAATCATGGATTGGTGGCTCAGGAAAC] consensusID : consensus_318#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence [CTCAGCAATGAATCATGGATTGGTGGCTCAGGAAACAGGCCGACCAATAGCTGAAACGGACCCCCAGCAGTCTACAGAGGTACGATCTTTTAATCTGCCTCCATCTCAGTGCTGCAGTGTTCAACACGCCTGCTGTGTGTCACATTTTAACCAGATGCCCTCTTTTAACCGCTGCGTCTCTGCTGGAGCAGGTAAGAAGTTTTCATCTGTGTTTTTGTTTAATTTAACAATTGAGGAAATGTTTCTAGATGACACACAAAGTGTGATGATAAATAGCTAGCATGCGGATATTTGGGTGTCAACCATTGGACACATGCAGAAGTTCTTTATTTTTGTTGTGGAACCCTAATGTATTTTTCTTCCCCCCTCTTTGGAATAATTTAGCCATAACAGAGGTAAGAACCTGTTATTTAAGCTTTATACCAAAGAAATCTTTACATTGTAATTGCATCATGCTTATATTTCCTCGCAGTCGTGCTCTTTCAACACCCTGCAGGGTGAGTGCTGTATTCGTTGTTTTTGTCAGACCTTTCTGTTTTAAGTGAGCCTGTCCTGAGTCCTCCT] [+] EMBL CA330637 [CTCAGCAATGAATCATGGATTGGTGGCTCAGGAAACAGGCCGACCAATAGCTGAAACGGACCCCCAGCAGTCTACAGAGGTACGATCTTTTAATCTGCCTCCATCTCAGTGCTGCAGTGTTCAACACGCCTGCTGTGTGTCACATTTTAACCAGATGCCCTCTTTTAACCGCTGCGTCTCTGCTGGAGCAGGTAAGAAGTTTTCATCTGTGTTTTTGTTTAATTTAACAATTGAGGAAATGTTTCTAGATGACACACAAAGTGTGATGATAAATAGCTAGCATGCGGATATTTGGGTGTCAACCATTGGACACATGCAGAAGTTCTTTATTTTTGTTGTGGAACCCTAATGTATTTTTCTTCCCCCCTCTTTGGAATAATTTAGCCATAACAGAGGTAAGAACCTGTTATTTAAGCTTTATACCAAAGAAATCTTTACATTGTAATTGCATCATGCTTATATTTCCTCGCAGTCGTGCTCTTTCAACACCCTGCAGGGTGAGTGCTGTATTCGTTGTTTTTGTCAGACCTTTCTGTTTTAAGTGAGCCTGTCCTGAGTCCTCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_318#0 GGACTGCGCTCGCTCA-GACTCGCTGAAAACCTCTGTCCAAACAGGCCGGGGTGCAACAT 59 consensus_318#1 -CTCAGCAATGAATCATGGATTGGTGGC--TCAGGAAACAGGCCGACCAATAGCTGAAAC 57 * ** * *** * * * ** * ** * * ** * * consensus_318#0 GGACTTCCAGGCGCGCCTCTTGAAGGTAGGCAATGACCTGCGGAAGGATGAGGTGCGAGC 119 consensus_318#1 GGACCCCCAG---CAGTCTACAGAGGTA--CGATCTTTTAATCTGCCTCCATCTCAGTGC 112 **** **** * ***** * ** * * * * ** consensus_318#0 TCTGGTCTTTCTCTGCTCCGACATCCTGGGCTGCAACCCGGCCGCGGTGCAGTCGGCCGG 179 consensus_318#1 TGCAGTGTT---CAACACGCCTGCTGTGTGTCACATTTTAACCA-GATGCCCTCTTTTAA 168 * ** ** * * * ** * ** ** * *** ** consensus_318#0 TGACCTCTTCTCCCGCCTGTCCGACCAGGACCACCTCTCCGAGGAGCAGCCCCACCTGCT 239 consensus_318#1 CCGCTGCGTCTCTGCTGGAGCAGGTAAGAAGTTTTCATCTGTGTTTTTGTTTAATTTAAC 228 * * **** * * ** * ** * * * * * consensus_318#0 GGTGGAGCTGCTCGGCATCATCCAGCGCACTAAGC-TGCTCCGGGATCACAATCTCCCCC 298 consensus_318#1 AATTGAGGAAAT-GTTTCTAGATGACACACAAAGTGTGATGATAAATAGCTAGCATGCGG 287 * *** * * * * *** *** ** * ** * * * * consensus_318#0 GTACTGGAGCGCAGGACCTCATCTCCCCTTACAGGAAGCTGCTGTACTCTCTGTCTGAGG 358 consensus_318#1 ATATTTGGGTGTCAACCATTGG--ACACATGCAGAAG--TTCTTTATTTTTGTTGTGGAA 343 ** * * * * * * * * * *** * * ** ** * * * ** consensus_318#0 AGCTGACTGCTGATGACTTGAAGGACATAAAGTTCCTGTTAAACAATAAACTTCCACGTG 418 consensus_318#1 CCCTAATGTATTTTTCTTCCCCCCTCTTTGGAATA--ATTTAGCCATAA---CAGAGGTA 398 ** * * * * * * * ** * * **** * ** consensus_318#0 GAAAACTGG-AGGAAGTTACAACACTGGAGGTCTTCATGGAGCTGGAACACAGGGCCCTC 477 consensus_318#1 AGAACCTGTTATTTAAGCTTTATACCAAAGAAATCTTTACATTGTAATTGCATCATGCTT 458 ** *** * * * ** ** * * * * ** ** consensus_318#0 ATCAGTGACACTGACCTCGGGTTCCTGGAGAGCATCATTCAACCAGTCTGCCCAGTGCTG 537 consensus_318#1 AT--ATTTCCTCGCAGTCGTGCTCTTTCAA--CACCCTGCAG--GGTGAGTGCTGTATTC 512 ** * * * *** * ** * * ** * * ** ** * * ** * consensus_318#0 CTAGAAAAAATCAACCAGTTCAATGCACAG-AACTCAGCAATGAATCATGGATTGGTGGC 596 consensus_318#1 GTTGTTTTTGTCAGACCTTTCTGTTTTAAGTGAGCCTGTCCTGAGTCCTCCT-------- 564 * * *** * *** * ** * * * *** ** * consensus_318#0 TCAGGAAAC 605 consensus_318#1 --------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |