These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_319#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence [CTATCCAGAGTGCCGCCCATTGCCGCCCGCCTGCGAAATGTCGGAGAGGAGCATCCTCAGCCGACTGGCCAGCAAGGGCACCGAGACGCACACGCCCCCGGTCAGCAGCCTGTTTCAAATCCACGCACCTTTATACCCCATACCTCCAGGACCTTACGCAACCAATCAGAACTACGGTGCCCCCTTCACCCCTGCCCCACCCAGTGCCCTCCACATGGGAGGGGCCAACTACAGCCAGATGCCTCCTGGATCCTTCATATCAGTGTTGAACGGGCCTCCCATGTCCGTGAAGAAGGAGCGGGAGGCAGAGTTCCTACACAGTCGGCGGGAGCAGCGAACCCGGGAGGTCATCTGCATTGATGACTAG] [+] EMBL FR0063433 [CTATCCAGAGTGCCGCCCATTGCCGCCCGCCTGCGAAATGTCGGAGAGGAGCATCCTCAGCCGACTGGCCAGCAAGGGCACCGAGACGCACACGCCCCCGGTCAGCAGCCTGTTTCAAATCCACGCACCTTTATACCCCATACCTCCAGGACCTTACGCAACCAATCAGAACTACGGTGCCCCCTTCACCCCTGCCCCACCCAGTGCCCTCCACATGGGAGGGGCCAACTACAGCCAGATGCCTCCTGGATCCTTCATATCAGTGTTGAACGGGCCTCCCATGTCCGTGAAGAAGGAGCGGGAGGCAGAGTTCCTACACAGTCGGCGGGAGCAGCGAACCCGGGAGGTCATCTGCATTGATGACTAG] consensusID : consensus_319#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 320 fasta sequence [ATGCTTTGGAACGTCCAACGGGAGTTACAAGTGAAAAGGAGATTCTATTAAGGAATGTCTTTGTTCGCTTTACATGATGGGGCAAATGGTTCCTTCTGACATCCGCATACCTTTAGCAAACCTTCCATTTACTTGATGCTGCTGCATATTTGGCACATTCACACACTTGCCATTAATGGTGTCTCACTGTTGTGTTCCTCCAGTGTTGAACGGGCCTCCCATGTCCGTGAAGAAAGAGCGGGAGGCAGAGTTCCTACACAGTCGGCGGGGAGCAGCGAACCCGGGGAGGGCATCTGCATTGATGACTAGGGCCGAATGCA] [+] EMBL FR0060192 [ATGCTTTGGAACGTCCAACGGGAGTTACAAGTGAAAAGGAGATTCTATTAAGGAATGTCTTTGTTCGCTTTACATGATGGGGCAAATGGTTCCTTCTGACATCCGCATACCTTTAGCAAACCTTCCATTTACTTGATGCTGCTGCATATTTGGCACATTCACACACTTGCCATTAATGGTGTCTCACTGTTGTGTTCCTCCAGTGTTGAACGGGCCTCCCATGTCCGTGAAGAAAGAGCGGGAGGCAGAGTTCCTACACAGTCGGCGGGGAGCAGCGAACCCGGGGAGGGCATCTGCATTGATGACTAGGGCCGAATGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_319#0 CTATCCAGAGTGCCGCCCATTGCCGCCCGCCTGCGAAATGTCGGAGAGGAGCATCCTCAG 60 consensus_319#1 --------------------------ATGCTT-TGGAACGTCCAACGGGAGT---TACAA 30 ** * * ** *** * **** ** consensus_319#0 CCGACTGGCCAGCAAGGGCACCGAGACGCACACGCCCCCGGTCAGCAGCCTGTTTCAAAT 120 consensus_319#1 GTGAAAAG---GAGATTCTATTAAGGAATGTCTTTGTTCGCTTTACATGATGGGGCAAAT 87 ** * * * * ** ** * ** ** ***** consensus_319#0 CCACGCACCTTTATACCCCATACCTCCAGGACCTTACGCAACCAATCAGAACTACGGTGC 180 consensus_319#1 GGTTCCTTCTGACATCCGCATACCTTTAGCAAACCTTCCATTTACTTGATGCTG------ 141 * ** ** ******* ** * ** * * ** consensus_319#0 CCCCTTCACCCCTGCCCCACCCAGTGCCCTCCACATGGGAGGGGCCAACTACAGCCAGAT 240 consensus_319#1 ---CTGCATATTTGGCACATTCA-CACACTTGCCATTAATGGTGTC--TCACTGTTGTGT 195 ** ** ** * ** ** * ** *** ** * * ** * * consensus_319#0 GCCTCCTGGATCCTTCATATCAGTGTTGAACGGGCCTCCCATGTCCGTGAAGAAGGAGCG 300 consensus_319#1 TCCTCC---------------AGTGTTGAACGGGCCTCCCATGTCCGTGAAGAAAGAGCG 240 ***** ********************************* ***** consensus_319#0 GGAGGCAGAGTTCCTACACAGTCGGCGGG-AGCAGCGAACCCGGG-AGGTCATCTGCATT 358 consensus_319#1 GGAGGCAGAGTTCCTACACAGTCGGCGGGGAGCAGCGAACCCGGGGAGGGCATCTGCATT 300 ***************************** *************** *** ********** consensus_319#0 GATGACTAG----------- 367 consensus_319#1 GATGACTAGGGCCGAATGCA 320 ********* |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |