These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_333#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 578 fasta sequence [ATAAAGTGCATGTGCAGCAAAAACAAGCTATTTGTTCCCAAAGAAAGATGTTGAAGCCTATCCTGCAGGTCTTGTATGGGAGTCAGACTGGCTCTGCTCAGGACACAGCCCACAGGGTCGCTCGGCAAGCTCGGAGAAAACAGATCCAGGTTCAGGTTCTACCACTGGATTCTTACAATGTAGCCAACCTGATCTCAGAGACTCTGGTTGTGTTCGTTTGTGCTACCACGGGCCAGGGAGACCCCCCAGACAACATGAAGAACTTCTGGAGGTTCATCTTCAAGAAATCTTTGCCCCTTGGCTCTTTGTCTCAGCTGGACTGCGCTGTTTTGGGCCTGGGGGACTCCTCATATGCAAAGTTCAATTTTGTGGCTAAGAAGCTGTATAAACGTCTGGTACAGCTGGGAGCAAGTATGCTTCTACCTGTCGGGTTGGCAGATGATCAGCATCACTTGGGGGCGGATGCTGTAATTTACCCATGGCTCACGGCACTGTGGGACAAATTCTATGCTCTATATCCATGTTTTTCTGATGTCATTCCACTGAGTGAATATGAACCGCTCCCTCCAACATACAAG] [+] EMBL CA330803 [ATAAAGTGCATGTGCAGCAAAAACAAGCTATTTGTTCCCAAAGAAAGATGTTGAAGCCTATCCTGCAGGTCTTGTATGGGAGTCAGACTGGCTCTGCTCAGGACACAGCCCACAGGGTCGCTCGGCAAGCTCGGAGAAAACAGATCCAGGTTCAGGTTCTACCACTGGATTCTTACAATGTAGCCAACCTGATCTCAGAGACTCTGGTTGTGTTCGTTTGTGCTACCACGGGCCAGGGAGACCCCCCAGACAACATGAAGAACTTCTGGAGGTTCATCTTCAAGAAATCTTTGCCCCTTGGCTCTTTGTCTCAGCTGGACTGCGCTGTTTTGGGCCTGGGGGACTCCTCATATGCAAAGTTCAATTTTGTGGCTAAGAAGCTGTATAAACGTCTGGTACAGCTGGGAGCAAGTATGCTTCTACCTGTCGGGTTGGCAGATGATCAGCATCACTTGGGGGCGGATGCTGTAATTTACCCATGGCTCACGGCACTGTGGGACAAATTCTATGCTCTATATCCATGTTTTTCTGATGTCATTCCACTGAGTGAATATGAACCGCTCCCTCCAACATACAAG] consensusID : consensus_333#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 376 fasta sequence [TGAAACTTTGCCATCCACGTCGATCTGTTAACAAGGCAACGCCCGTGTCCTAAACAATACTCGGCATCCGTAGTTTGGAGGAAGTGACGTATACAGGAAAAAGGCGGGGTCTGCCTCAAACTTCGCATCGACTGTACTGGACACTATCAAACAAAGGAAAGATGTTGAAGCCTATCCTGCAGGTCTTGTATGGGAGTCAGACTGGCTCTGCTCAGGACACAGCCCACAGGGTCGCTCGGCAAGCTCGGAGAAAACAGATCCAGGTTCAGGTTCTACCACTGGATTCTTACAATGTAGCCAACCTGATCTCAGAGACTCTGGNTGTGTTCGTTTGTGCTACCACGGGCCAGGGAGACCCCCCAGACAACATGAAGAA] [+] EMBL FR0060303 [TGAAACTTTGCCATCCACGTCGATCTGTTAACAAGGCAACGCCCGTGTCCTAAACAATACTCGGCATCCGTAGTTTGGAGGAAGTGACGTATACAGGAAAAAGGCGGGGTCTGCCTCAAACTTCGCATCGACTGTACTGGACACTATCAAACAAAGGAAAGATGTTGAAGCCTATCCTGCAGGTCTTGTATGGGAGTCAGACTGGCTCTGCTCAGGACACAGCCCACAGGGTCGCTCGGCAAGCTCGGAGAAAACAGATCCAGGTTCAGGTTCTACCACTGGATTCTTACAATGTAGCCAACCTGATCTCAGAGACTCTGGNTGTGTTCGTTTGTGCTACCACGGGCCAGGGAGACCCCCCAGACAACATGAAGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_333#0 ------------------------------------------------------------ consensus_333#1 TGAAACTTTGCCATCCACGTCGATCTGTTAACAAGGCAACGCCCGTGTCCTAAACAATAC 60 consensus_333#0 -------------------------------------------------------ATAAA 5 consensus_333#1 TCGGCATCCGTAGTTTGGAGGAAGTGACGTATACAGGAAAAAGGCGGGGTCTGCCTCAAA 120 *** consensus_333#0 GTGCATGTGCAGCAAAAACAAGCTATTTGTTCCCAAAGAAAGATGTTGAAGCCTATCCTG 65 consensus_333#1 CTTCGCAT-CGACTGTACTGGACACTATCAAACAAAGGAAAGATGTTGAAGCCTATCCTG 179 * * * * * * * * * * ** *********************** consensus_333#0 CAGGTCTTGTATGGGAGTCAGACTGGCTCTGCTCAGGACACAGCCCACAGGGTCGCTCGG 125 consensus_333#1 CAGGTCTTGTATGGGAGTCAGACTGGCTCTGCTCAGGACACAGCCCACAGGGTCGCTCGG 239 ************************************************************ consensus_333#0 CAAGCTCGGAGAAAACAGATCCAGGTTCAGGTTCTACCACTGGATTCTTACAATGTAGCC 185 consensus_333#1 CAAGCTCGGAGAAAACAGATCCAGGTTCAGGTTCTACCACTGGATTCTTACAATGTAGCC 299 ************************************************************ consensus_333#0 AACCTGATCTCAGAGACTCTGGTTGTGTTCGTTTGTGCTACCACGGGCCAGGGAGACCCC 245 consensus_333#1 AACCTGATCTCAGAGACTCTGGNTGTGTTCGTTTGTGCTACCACGGGCCAGGGAGACCCC 359 ********************** ************************************* consensus_333#0 CCAGACAACATGAAGAACTTCTGGAGGTTCATCTTCAAGAAATCTTTGCCCCTTGGCTCT 305 consensus_333#1 CCAGACAACATGAAGAA------------------------------------------- 376 ***************** consensus_333#0 TTGTCTCAGCTGGACTGCGCTGTTTTGGGCCTGGGGGACTCCTCATATGCAAAGTTCAAT 365 consensus_333#1 ------------------------------------------------------------ consensus_333#0 TTTGTGGCTAAGAAGCTGTATAAACGTCTGGTACAGCTGGGAGCAAGTATGCTTCTACCT 425 consensus_333#1 ------------------------------------------------------------ consensus_333#0 GTCGGGTTGGCAGATGATCAGCATCACTTGGGGGCGGATGCTGTAATTTACCCATGGCTC 485 consensus_333#1 ------------------------------------------------------------ consensus_333#0 ACGGCACTGTGGGACAAATTCTATGCTCTATATCCATGTTTTTCTGATGTCATTCCACTG 545 consensus_333#1 ------------------------------------------------------------ consensus_333#0 AGTGAATATGAACCGCTCCCTCCAACATACAAG 578 consensus_333#1 --------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |