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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_333#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 578 fasta sequence
[ATAAAGTGCATGTGCAGCAAAAACAAGCTATTTGTTCCCAAAGAAAGATGTTGAAGCCTATCCTGCAGGTCTTGTATGGGAGTCAGACTGGCTCTGCTCAGGACACAGCCCACAGGGTCGCTCGGCAAGCTCGGAGAAAACAGATCCAGGTTCAGGTTCTACCACTGGATTCTTACAATGTAGCCAACCTGATCTCAGAGACTCTGGTTGTGTTCGTTTGTGCTACCACGGGCCAGGGAGACCCCCCAGACAACATGAAGAACTTCTGGAGGTTCATCTTCAAGAAATCTTTGCCCCTTGGCTCTTTGTCTCAGCTGGACTGCGCTGTTTTGGGCCTGGGGGACTCCTCATATGCAAAGTTCAATTTTGTGGCTAAGAAGCTGTATAAACGTCTGGTACAGCTGGGAGCAAGTATGCTTCTACCTGTCGGGTTGGCAGATGATCAGCATCACTTGGGGGCGGATGCTGTAATTTACCCATGGCTCACGGCACTGTGGGACAAATTCTATGCTCTATATCCATGTTTTTCTGATGTCATTCCACTGAGTGAATATGAACCGCTCCCTCCAACATACAAG]
[+] EMBL CA330803 [ATAAAGTGCATGTGCAGCAAAAACAAGCTATTTGTTCCCAAAGAAAGATGTTGAAGCCTATCCTGCAGGTCTTGTATGGGAGTCAGACTGGCTCTGCTCAGGACACAGCCCACAGGGTCGCTCGGCAAGCTCGGAGAAAACAGATCCAGGTTCAGGTTCTACCACTGGATTCTTACAATGTAGCCAACCTGATCTCAGAGACTCTGGTTGTGTTCGTTTGTGCTACCACGGGCCAGGGAGACCCCCCAGACAACATGAAGAACTTCTGGAGGTTCATCTTCAAGAAATCTTTGCCCCTTGGCTCTTTGTCTCAGCTGGACTGCGCTGTTTTGGGCCTGGGGGACTCCTCATATGCAAAGTTCAATTTTGTGGCTAAGAAGCTGTATAAACGTCTGGTACAGCTGGGAGCAAGTATGCTTCTACCTGTCGGGTTGGCAGATGATCAGCATCACTTGGGGGCGGATGCTGTAATTTACCCATGGCTCACGGCACTGTGGGACAAATTCTATGCTCTATATCCATGTTTTTCTGATGTCATTCCACTGAGTGAATATGAACCGCTCCCTCCAACATACAAG]
consensusID : consensus_333#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 376 fasta sequence
[TGAAACTTTGCCATCCACGTCGATCTGTTAACAAGGCAACGCCCGTGTCCTAAACAATACTCGGCATCCGTAGTTTGGAGGAAGTGACGTATACAGGAAAAAGGCGGGGTCTGCCTCAAACTTCGCATCGACTGTACTGGACACTATCAAACAAAGGAAAGATGTTGAAGCCTATCCTGCAGGTCTTGTATGGGAGTCAGACTGGCTCTGCTCAGGACACAGCCCACAGGGTCGCTCGGCAAGCTCGGAGAAAACAGATCCAGGTTCAGGTTCTACCACTGGATTCTTACAATGTAGCCAACCTGATCTCAGAGACTCTGGNTGTGTTCGTTTGTGCTACCACGGGCCAGGGAGACCCCCCAGACAACATGAAGAA]
[+] EMBL FR0060303 [TGAAACTTTGCCATCCACGTCGATCTGTTAACAAGGCAACGCCCGTGTCCTAAACAATACTCGGCATCCGTAGTTTGGAGGAAGTGACGTATACAGGAAAAAGGCGGGGTCTGCCTCAAACTTCGCATCGACTGTACTGGACACTATCAAACAAAGGAAAGATGTTGAAGCCTATCCTGCAGGTCTTGTATGGGAGTCAGACTGGCTCTGCTCAGGACACAGCCCACAGGGTCGCTCGGCAAGCTCGGAGAAAACAGATCCAGGTTCAGGTTCTACCACTGGATTCTTACAATGTAGCCAACCTGATCTCAGAGACTCTGGNTGTGTTCGTTTGTGCTACCACGGGCCAGGGAGACCCCCCAGACAACATGAAGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_333#0 ------------------------------------------------------------
consensus_333#1 TGAAACTTTGCCATCCACGTCGATCTGTTAACAAGGCAACGCCCGTGTCCTAAACAATAC 60
consensus_333#0 -------------------------------------------------------ATAAA 5
consensus_333#1 TCGGCATCCGTAGTTTGGAGGAAGTGACGTATACAGGAAAAAGGCGGGGTCTGCCTCAAA 120
***
consensus_333#0 GTGCATGTGCAGCAAAAACAAGCTATTTGTTCCCAAAGAAAGATGTTGAAGCCTATCCTG 65
consensus_333#1 CTTCGCAT-CGACTGTACTGGACACTATCAAACAAAGGAAAGATGTTGAAGCCTATCCTG 179
* * * * * * * * * * ** ***********************
consensus_333#0 CAGGTCTTGTATGGGAGTCAGACTGGCTCTGCTCAGGACACAGCCCACAGGGTCGCTCGG 125
consensus_333#1 CAGGTCTTGTATGGGAGTCAGACTGGCTCTGCTCAGGACACAGCCCACAGGGTCGCTCGG 239
************************************************************
consensus_333#0 CAAGCTCGGAGAAAACAGATCCAGGTTCAGGTTCTACCACTGGATTCTTACAATGTAGCC 185
consensus_333#1 CAAGCTCGGAGAAAACAGATCCAGGTTCAGGTTCTACCACTGGATTCTTACAATGTAGCC 299
************************************************************
consensus_333#0 AACCTGATCTCAGAGACTCTGGTTGTGTTCGTTTGTGCTACCACGGGCCAGGGAGACCCC 245
consensus_333#1 AACCTGATCTCAGAGACTCTGGNTGTGTTCGTTTGTGCTACCACGGGCCAGGGAGACCCC 359
********************** *************************************
consensus_333#0 CCAGACAACATGAAGAACTTCTGGAGGTTCATCTTCAAGAAATCTTTGCCCCTTGGCTCT 305
consensus_333#1 CCAGACAACATGAAGAA------------------------------------------- 376
*****************
consensus_333#0 TTGTCTCAGCTGGACTGCGCTGTTTTGGGCCTGGGGGACTCCTCATATGCAAAGTTCAAT 365
consensus_333#1 ------------------------------------------------------------
consensus_333#0 TTTGTGGCTAAGAAGCTGTATAAACGTCTGGTACAGCTGGGAGCAAGTATGCTTCTACCT 425
consensus_333#1 ------------------------------------------------------------
consensus_333#0 GTCGGGTTGGCAGATGATCAGCATCACTTGGGGGCGGATGCTGTAATTTACCCATGGCTC 485
consensus_333#1 ------------------------------------------------------------
consensus_333#0 ACGGCACTGTGGGACAAATTCTATGCTCTATATCCATGTTTTTCTGATGTCATTCCACTG 545
consensus_333#1 ------------------------------------------------------------
consensus_333#0 AGTGAATATGAACCGCTCCCTCCAACATACAAG 578
consensus_333#1 ---------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |