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Takifugu rubripes
cluster # 335 cluster # 335       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_335#0 length = 400 sequences # 1  
consensus_335#1 length = 365 sequences # 1  

consensusID : consensus_335#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 400
fasta sequence
                              [TTTGCAGAGACAGAAGATTTTGGGGATTTATAGAGAAATGCTGAGGACGATACGTCAAGTACCAGAGGAGGGGGACAGGAAGTACCTGAAAGACTGGGCCAGAGACGAGTTCAAACGGAACAAGAGCGTCACAAACCAGGATGCTGTTCGCATGATGATCACACAGGCCAACAACCATCTGGAGGAGCTGAAGAAGTCTCTGGCCTTGGGCAAGAGTTAAGCATTGACCCGGGAGGTGCGCTAGAACCAGGAGGTGCACTGGATCCTGTTGGACTGATAACGCAGCTCTCCCAGCTTAAGAAGCCTTCAGAAGTGCTGCTGCCGATGTCGCTCCATTTGTCCCTGCCTTAGCGTCACCGAGCACGAGCACCTAGAGGAGGGACTATTGTCCACTGGGGGA]

[+] EMBL FR0057562            [TTTGCAGAGACAGAAGATTTTGGGGATTTATAGAGAAATGCTGAGGACGATACGTCAAGTACCAGAGGAGGGGGACAGGAAGTACCTGAAAGACTGGGCCAGAGACGAGTTCAAACGGAACAAGAGCGTCACAAACCAGGATGCTGTTCGCATGATGATCACACAGGCCAACAACCATCTGGAGGAGCTGAAGAAGTCTCTGGCCTTGGGCAAGAGTTAAGCATTGACCCGGGAGGTGCGCTAGAACCAGGAGGTGCACTGGATCCTGTTGGACTGATAACGCAGCTCTCCCAGCTTAAGAAGCCTTCAGAAGTGCTGCTGCCGATGTCGCTCCATTTGTCCCTGCCTTAGCGTCACCGAGCACGAGCACCTAGAGGAGGGACTATTGTCCACTGGGGGA]


>consensus_335#0 TTTGCAGAGACAGAAGATTTTGGGGATTTATAGAGAAATGCTGAGGACGATACGTCAAGT ACCAGAGGAGGGGGACAGGAAGTACCTGAAAGACTGGGCCAGAGACGAGTTCAAACGGAA CAAGAGCGTCACAAACCAGGATGCTGTTCGCATGATGATCACACAGGCCAACAACCATCT GGAGGAGCTGAAGAAGTCTCTGGCCTTGGGCAAGAGTTAAGCATTGACCCGGGAGGTGCG CTAGAACCAGGAGGTGCACTGGATCCTGTTGGACTGATAACGCAGCTCTCCCAGCTTAAG AAGCCTTCAGAAGTGCTGCTGCCGATGTCGCTCCATTTGTCCCTGCCTTAGCGTCACCGA GCACGAGCACCTAGAGGAGGGACTATTGTCCACTGGGGGA



consensusID : consensus_335#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 365
fasta sequence
                              [GGAAGTATTCTGACCCACTGGGCCAGAGACGAGTTCAAACGGAACAAGAGCGTCACAAACCAGGATGCTGTTCGCATGATGATCACACAAGCCAACAACCATCTGGAGGAGCTGAAGAAGTCTCTGGCCTTGGCCAAGAGTTAAGCATTGACCCGGGAGGTGCGCTAGAACCAGGAGGTGGACTGATAACGCAACTCTCCCAGCTTAAGAATTTTTCTTAAGTGCTGCTGCCGATGTCGCTCCATTTGTCTCTGCGTGAGCGTCACCGAGCACGAGCACCTAGAGGAGGGACTATTGTCCACTGGTGGATTCTCCCCTGTGAGTGTTCAACTGGAGGAGATAAAGAAACATCAATAAAGTAAAAT]

[+] EMBL CA330853             [GGAAGTATTCTGACCCACTGGGCCAGAGACGAGTTCAAACGGAACAAGAGCGTCACAAACCAGGATGCTGTTCGCATGATGATCACACAAGCCAACAACCATCTGGAGGAGCTGAAGAAGTCTCTGGCCTTGGCCAAGAGTTAAGCATTGACCCGGGAGGTGCGCTAGAACCAGGAGGTGGACTGATAACGCAACTCTCCCAGCTTAAGAATTTTTCTTAAGTGCTGCTGCCGATGTCGCTCCATTTGTCTCTGCGTGAGCGTCACCGAGCACGAGCACCTAGAGGAGGGACTATTGTCCACTGGTGGATTCTCCCCTGTGAGTGTTCAACTGGAGGAGATAAAGAAACATCAATAAAGTAAAAT]


>consensus_335#1 GGAAGTATTCTGACCCACTGGGCCAGAGACGAGTTCAAACGGAACAAGAGCGTCACAAAC CAGGATGCTGTTCGCATGATGATCACACAAGCCAACAACCATCTGGAGGAGCTGAAGAAG TCTCTGGCCTTGGCCAAGAGTTAAGCATTGACCCGGGAGGTGCGCTAGAACCAGGAGGTG GACTGATAACGCAACTCTCCCAGCTTAAGAATTTTTCTTAAGTGCTGCTGCCGATGTCGC TCCATTTGTCTCTGCGTGAGCGTCACCGAGCACGAGCACCTAGAGGAGGGACTATTGTCC ACTGGTGGATTCTCCCCTGTGAGTGTTCAACTGGAGGAGATAAAGAAACATCAATAAAGT AAAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_335#0      TTTGCAGAGACAGAAGATTTTGGGGATTTATAGAGAAATGCTGAGGACGATACGTCAAGT 60
consensus_335#1      ------------------------------------------------------------
                                                                                 

consensus_335#0      ACCAGAGGAGGGGGACAGGAAGTAC-CTGAAAGACTGGGCCAGAGACGAGTTCAAACGGA 119
consensus_335#1      -----------------GGAAGTATTCTGACCCACTGGGCCAGAGACGAGTTCAAACGGA 43
                                      *******  ****   ***************************

consensus_335#0      ACAAGAGCGTCACAAACCAGGATGCTGTTCGCATGATGATCACACAGGCCAACAACCATC 179
consensus_335#1      ACAAGAGCGTCACAAACCAGGATGCTGTTCGCATGATGATCACACAAGCCAACAACCATC 103
                     ********************************************** *************

consensus_335#0      TGGAGGAGCTGAAGAAGTCTCTGGCCTTGGGCAAGAGTTAAGCATTGACCCGGGAGGTGC 239
consensus_335#1      TGGAGGAGCTGAAGAAGTCTCTGGCCTTGGCCAAGAGTTAAGCATTGACCCGGGAGGTGC 163
                     ****************************** *****************************

consensus_335#0      GCTAGAACCAGGAGGTGCACTGGATCCTGTTGGACTGATAACGCAGCTCTCCCAGCTTAA 299
consensus_335#1      GCTAGAACCAGGAGGTG---------------GACTGATAACGCAACTCTCCCAGCTTAA 208
                     *****************               ************* **************

consensus_335#0      GAAGCCTTCAGAAGTGCTGCTGCCGATGTCGCTCCATTTGTCCCTGCCTTAGCGTCACCG 359
consensus_335#1      GAATTTTTCTTAAGTGCTGCTGCCGATGTCGCTCCATTTGTCTCTGCGTGAGCGTCACCG 268
                     ***   ***  ******************************* **** * **********

consensus_335#0      AGCACGAGCACCTAGAGGAGGGACTATTGTCCACTGGGGGA------------------- 400
consensus_335#1      AGCACGAGCACCTAGAGGAGGGACTATTGTCCACTGGTGGATTCTCCCCTGTGAGTGTTC 328
                     ************************************* ***                   

consensus_335#0      -------------------------------------
consensus_335#1      AACTGGAGGAGATAAAGAAACATCAATAAAGTAAAAT 365
                                                          




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)