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Takifugu rubripes
cluster # 366 cluster # 366       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_366#0 length = 531 sequences # 1  
 consensus_366#1 length = 476 sequences # 1  
consensusID : consensus_366#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 531
fasta sequence 
                              [TTGTTTACCAAAAGTTTTACAAAAACACTATTCTACAAGGGACCTTGTGTCACATTCTCACTGATTGGCGTACTAATACCAAATCCTTGCCAAATTAATAAATGGATCCTCTCTGCGCTTGTCACTCTTGGGTGCATCACCAGGAATGTGGCCTGCACCCCCACCACATATATTGCTCCCGAGAGCTTGCAGCACCGCTGCTTTTCGTAAGACTTCACGGGTGGATTTAAGAACGCACAACATTAGCTTTGCTAAATGTAACAAAAGACACAATTCGCACAGACACAGACAAGTGAGACGTGAAACACGGAATGTACACGCTGGGTCGGGGTGTCTTTGGGCTACCGTCAGCCGGCACCTTCCCGCTGTATATTATCCCGACAGATTCTAAAGATCTCTGTTGCAGGAGTATGAAAATAAAACCGCTACTTCTTTACAGTTTGATTTGAGTGGAGTGCTGAAGCTGGTGCGACCCGACGGCACCCTGTAGTGGTGAGACTACTCATCCGGCCCCTCGGGGGGTTCATATCC]

[+] EMBL CA331148             [TTGTTTACCAAAAGTTTTACAAAAACACTATTCTACAAGGGACCTTGTGTCACATTCTCACTGATTGGCGTACTAATACCAAATCCTTGCCAAATTAATAAATGGATCCTCTCTGCGCTTGTCACTCTTGGGTGCATCACCAGGAATGTGGCCTGCACCCCCACCACATATATTGCTCCCGAGAGCTTGCAGCACCGCTGCTTTTCGTAAGACTTCACGGGTGGATTTAAGAACGCACAACATTAGCTTTGCTAAATGTAACAAAAGACACAATTCGCACAGACACAGACAAGTGAGACGTGAAACACGGAATGTACACGCTGGGTCGGGGTGTCTTTGGGCTACCGTCAGCCGGCACCTTCCCGCTGTATATTATCCCGACAGATTCTAAAGATCTCTGTTGCAGGAGTATGAAAATAAAACCGCTACTTCTTTACAGTTTGATTTGAGTGGAGTGCTGAAGCTGGTGCGACCCGACGGCACCCTGTAGTGGTGAGACTACTCATCCGGCCCCTCGGGGGGTTCATATCC]




>consensus_366#0
TTGTTTACCAAAAGTTTTACAAAAACACTATTCTACAAGGGACCTTGTGTCACATTCTCA
CTGATTGGCGTACTAATACCAAATCCTTGCCAAATTAATAAATGGATCCTCTCTGCGCTT
GTCACTCTTGGGTGCATCACCAGGAATGTGGCCTGCACCCCCACCACATATATTGCTCCC
GAGAGCTTGCAGCACCGCTGCTTTTCGTAAGACTTCACGGGTGGATTTAAGAACGCACAA
CATTAGCTTTGCTAAATGTAACAAAAGACACAATTCGCACAGACACAGACAAGTGAGACG
TGAAACACGGAATGTACACGCTGGGTCGGGGTGTCTTTGGGCTACCGTCAGCCGGCACCT
TCCCGCTGTATATTATCCCGACAGATTCTAAAGATCTCTGTTGCAGGAGTATGAAAATAA
AACCGCTACTTCTTTACAGTTTGATTTGAGTGGAGTGCTGAAGCTGGTGCGACCCGACGG
CACCCTGTAGTGGTGAGACTACTCATCCGGCCCCTCGGGGGGTTCATATCC

consensusID : consensus_366#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 476
fasta sequence 
                              [TTGTTTATTTAAATTTTCACAATAACAATACTCTCAAGGACACTAAGCATCACTCCTGTAACCATTGGTGGAAGACTACCCTTTCCTGTCCTCTGCACATCTTCAATCCCTTTTTCTCAGTTCTGCCACTGGCTCTCCTCCCGCGCACCAAAGAGGTCTCCAACGCCATCGTTTGCTCCCAAGAACCGACACGCCGCTGCTTTTCGTAAGACTTCACGGGTGGATTTAAGAACGCACAACATTAGCTTTGCTAAATGTAACAAAAGACACAATTCGCACAGACACAGACAAGTGAGACGTGAAACACGGAATGTACACGCTGGGTCGGGGTGTCTTTGGGCTACCGTCAGCCGGCACCTTCCCGCTGTATATTATCCCGACAGATTCTAAAGATCTCTGTTGCAGGAGTATGAAAATAAAACCGCTACTTCTTTACAGTTTGATTTGAGTGGAGTGCTGAAGCTGGTGCGACCCGA]

[+] EMBL CA331213             [TTGTTTATTTAAATTTTCACAATAACAATACTCTCAAGGACACTAAGCATCACTCCTGTAACCATTGGTGGAAGACTACCCTTTCCTGTCCTCTGCACATCTTCAATCCCTTTTTCTCAGTTCTGCCACTGGCTCTCCTCCCGCGCACCAAAGAGGTCTCCAACGCCATCGTTTGCTCCCAAGAACCGACACGCCGCTGCTTTTCGTAAGACTTCACGGGTGGATTTAAGAACGCACAACATTAGCTTTGCTAAATGTAACAAAAGACACAATTCGCACAGACACAGACAAGTGAGACGTGAAACACGGAATGTACACGCTGGGTCGGGGTGTCTTTGGGCTACCGTCAGCCGGCACCTTCCCGCTGTATATTATCCCGACAGATTCTAAAGATCTCTGTTGCAGGAGTATGAAAATAAAACCGCTACTTCTTTACAGTTTGATTTGAGTGGAGTGCTGAAGCTGGTGCGACCCGA]




>consensus_366#1
TTGTTTATTTAAATTTTCACAATAACAATACTCTCAAGGACACTAAGCATCACTCCTGTA
ACCATTGGTGGAAGACTACCCTTTCCTGTCCTCTGCACATCTTCAATCCCTTTTTCTCAG
TTCTGCCACTGGCTCTCCTCCCGCGCACCAAAGAGGTCTCCAACGCCATCGTTTGCTCCC
AAGAACCGACACGCCGCTGCTTTTCGTAAGACTTCACGGGTGGATTTAAGAACGCACAAC
ATTAGCTTTGCTAAATGTAACAAAAGACACAATTCGCACAGACACAGACAAGTGAGACGT
GAAACACGGAATGTACACGCTGGGTCGGGGTGTCTTTGGGCTACCGTCAGCCGGCACCTT
CCCGCTGTATATTATCCCGACAGATTCTAAAGATCTCTGTTGCAGGAGTATGAAAATAAA
ACCGCTACTTCTTTACAGTTTGATTTGAGTGGAGTGCTGAAGCTGGTGCGACCCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_366#0      TTGTTTACCAAAAGTTTTACAAAAACACTATTCTACAAGGGACCTTGTGTCACATTCTCA 60
consensus_366#1      TTGTTTATTTAAATTTTCACAATAACAATACTCTCAAGGACACTAAGCATCACTCCTGTA 60
                     *******   *** *** **** **** ** ***  * *  **   *  ****      *

consensus_366#0      CTGATTGGCGTACTAATACCAAATCCTTGCCAAATTAATAAATGGATCCTCTCTGCGCTT 120
consensus_366#1      ACCATTGGTGGAAGACTACCCTTTCCTGTCCTCTGCACATCTTCAATCCCTTTTTCTCAG 120
                        ***** * *  * ****   ****  **     *     *  ****  * * * *  

consensus_366#0      GTCACTCTTGGGTGCATCACCAGGAATGTGGCCTGCACCCCCACCACATATATTGCTCCC 180
consensus_366#1      TTCTGCCACTGGCTCTCCTCCCGCGCACCAAAGAGGTCTCCAACGCCATCGTTTGCTCCC 180
                      **   *   **  *  * ** *           *  * ** **  ***   ********

consensus_366#0      GAGAGCTTGCAGCACCGCTGCTTTTCGTAAGACTTCACGGGTGGATTTAAGAACGCACAA 240
consensus_366#1      AAGAACCGACA-CGCCGCTGCTTTTCGTAAGACTTCACGGGTGGATTTAAGAACGCACAA 239
                      *** *   ** * **********************************************

consensus_366#0      CATTAGCTTTGCTAAATGTAACAAAAGACACAATTCGCACAGACACAGACAAGTGAGACG 300
consensus_366#1      CATTAGCTTTGCTAAATGTAACAAAAGACACAATTCGCACAGACACAGACAAGTGAGACG 299
                     ************************************************************

consensus_366#0      TGAAACACGGAATGTACACGCTGGGTCGGGGTGTCTTTGGGCTACCGTCAGCCGGCACCT 360
consensus_366#1      TGAAACACGGAATGTACACGCTGGGTCGGGGTGTCTTTGGGCTACCGTCAGCCGGCACCT 359
                     ************************************************************

consensus_366#0      TCCCGCTGTATATTATCCCGACAGATTCTAAAGATCTCTGTTGCAGGAGTATGAAAATAA 420
consensus_366#1      TCCCGCTGTATATTATCCCGACAGATTCTAAAGATCTCTGTTGCAGGAGTATGAAAATAA 419
                     ************************************************************

consensus_366#0      AACCGCTACTTCTTTACAGTTTGATTTGAGTGGAGTGCTGAAGCTGGTGCGACCCGACGG 480
consensus_366#1      AACCGCTACTTCTTTACAGTTTGATTTGAGTGGAGTGCTGAAGCTGGTGCGACCCGA--- 476
                     *********************************************************   

consensus_366#0      CACCCTGTAGTGGTGAGACTACTCATCCGGCCCCTCGGGGGGTTCATATCC 531
consensus_366#1      ---------------------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)