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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_404#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence
[CAATCTGACAGAGTGATCGCTTTTAACTTAAAAGTTGCATCATATGCTTTTCTTCTAGTATTTCCACGTTGATGAGGGTTAGTAAAAATGACTGATTCACAATAGTTGTACTAGTGCGCCACGGAAAAAAACATAAATAAGCCGTAGAATAAGCCGCAGTGTTTAAAGTGTAGGAAAAAAGTAGCAGCTTATAGTCCGGAAATTACGGTAGTCACAGGAAATACATGGATACAAAAATAAAGAAAAAGATCATTTTAATAATAAATCTCTTTGTGTACTTACACTTGAACCATACAGGAGATAAGGTTCCTTACCTGACATATGTCCCAAAGACTCCCAGCTCACAAAGACAGGTGCTGATTTTGAGAGGAGCGTCTCGCTTCAAAAGGATGTTTTGGACAGGAGTGGGATGAATTTTATCCATCAAAATGTAGGCCATCCTCTCCTCGCTCCCCTTGAC]
[+] EMBL CA588842 [CAATCTGACAGAGTGATCGCTTTTAACTTAAAAGTTGCATCATATGCTTTTCTTCTAGTATTTCCACGTTGATGAGGGTTAGTAAAAATGACTGATTCACAATAGTTGTACTAGTGCGCCACGGAAAAAAACATAAATAAGCCGTAGAATAAGCCGCAGTGTTTAAAGTGTAGGAAAAAAGTAGCAGCTTATAGTCCGGAAATTACGGTAGTCACAGGAAATACATGGATACAAAAATAAAGAAAAAGATCATTTTAATAATAAATCTCTTTGTGTACTTACACTTGAACCATACAGGAGATAAGGTTCCTTACCTGACATATGTCCCAAAGACTCCCAGCTCACAAAGACAGGTGCTGATTTTGAGAGGAGCGTCTCGCTTCAAAAGGATGTTTTGGACAGGAGTGGGATGAATTTTATCCATCAAAATGTAGGCCATCCTCTCCTCGCTCCCCTTGAC]
consensusID : consensus_404#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 326 fasta sequence
[CAAATTACAGCTCAACGGTGTGCAGCTTTATGTTATGACACTATTTTTCACTGTAGTACATTTGTACTTTGACATACAGCTGTAAGCATATTGGAATATCATTTAAAGGAGCAGCGGATTATCCAGCACGGCTACTCCTGCTGNCNAACCCCTCCGTCTGCATGCTCGGAACTCTTGGTCCTCAACAAATGCCCCGCGCACTTGTTCAGCACCATTTCTCTCCCTTTTCTAACATATGTCCCAAAGACTCCCAGCTCACAAAGACAGGTGCTGATTTTGAGAGGAGCGTCTCGCTTCAGAAGGATGTTTTGGACAGGAGTGGGATG]
[+] EMBL CA331517 [CAAATTACAGCTCAACGGTGTGCAGCTTTATGTTATGACACTATTTTTCACTGTAGTACATTTGTACTTTGACATACAGCTGTAAGCATATTGGAATATCATTTAAAGGAGCAGCGGATTATCCAGCACGGCTACTCCTGCTGNCNAACCCCTCCGTCTGCATGCTCGGAACTCTTGGTCCTCAACAAATGCCCCGCGCACTTGTTCAGCACCATTTCTCTCCCTTTTCTAACATATGTCCCAAAGACTCCCAGCTCACAAAGACAGGTGCTGATTTTGAGAGGAGCGTCTCGCTTCAGAAGGATGTTTTGGACAGGAGTGGGATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_404#0 CAATCTGACAGAGTGATCGCTTTTAACTTAAAAGTTGCATCATATGCTTTTCTTCTAGTA 60
consensus_404#1 ---------------------------------------------------CAAATTACA 9
* * *
consensus_404#0 TTTCCACGTTGATGAGGGTTAGTAAAAATGACTGATTCACAATAGTTGTACTAGTGCGCC 120
consensus_404#1 GCTCAACGGTGTGCAGCTTTATGTTATGACACTATTTTTCACT-GTAGTACATTTGTACT 68
** *** ** ** *** * *** ** ** * ** **** ** *
consensus_404#0 ACGGAAAAAAACATAAATAAGCCGTAGAATAAGCCGCAGTGTTTAAAGTGTAGGAAAAAA 180
consensus_404#1 TTG-------ACATAC---AGCTGTA-AGCATATTGGAATATC----ATTTA------AA 107
* ***** *** *** * * * * * * * ** **
consensus_404#0 GTAGCAGCTTATAGTCCGGAAATTACGGTAGTCACAGGAAATACATGGATACAAAAATAA 240
consensus_404#1 GGAGCAGCGGATTATCCAG----CACGGCTACTCCTGCTGNCNAACCCCTCCGTCTGCAT 163
* ****** ** *** * **** * * * * * *
consensus_404#0 AGAAAAAGATCATTTTAATAATAAATCTCTTTGTGTACTTACACTTGAACCATACAGGAG 300
consensus_404#1 GCTCGGAACTCTTGGTCCTCAACAAATGCCCCGCGCACTTGT-TCAGCACCAT------- 215
* ** * * * * ** * * * **** * *****
consensus_404#0 ATAAGGTTCCTTACCTGACATATGTCCCAAAGACTCCCAGCTCACAAAGACAGGTGCTGA 360
consensus_404#1 -TTCTCTCCCTTTTCTAACATATGTCCCAAAGACTCCCAGCTCACAAAGACAGGTGCTGA 274
* * **** ** *******************************************
consensus_404#0 TTTTGAGAGGAGCGTCTCGCTTCAAAAGGATGTTTTGGACAGGAGTGGGATGAATTTTAT 420
consensus_404#1 TTTTGAGAGGAGCGTCTCGCTTCAGAAGGATGTTTTGGACAGGAGTGGGATG-------- 326
************************ ***************************
consensus_404#0 CCATCAAAATGTAGGCCATCCTCTCCTCGCTCCCCTTGAC 460
consensus_404#1 ----------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |