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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_412#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence
[TTTATGCTAATTTTATTCATACACAAAGCGCGAAGTTACATTAAACTTGCGTCTTCCTCGACACATACAGTATATTCCACCTGTCTCACTCTTACCTTTTCTGCTCGAGCGCCCCTAGCGGCCGATAGAAAAAATACATAAATAAGCCGCACTGTAGAATAAGCCACAGTGTTTAAAGTGTAGGAAAAAGTAGCGGCTTATAGTCCGGAAAATACGGTACTTTATATTTTAGTCATTAACTGACGCTTTTAGCATCAGGCCATTGAGACAAATGTGAATAAAATAGTGCCTTAAAATCCTAAATCACCCTGTACAAGGGCAACTAACAGTGCGGTGCTCTGCAGAGGAAGGCAAGAGGGATATAAATAAAAGCTCACCAAAGCTCCTTCCATCTGAAGCTGCTGATTCTTCCCCGCTCTCGTTTTTCAGGTGTAAAGATTGCAAAACTGTGTTTCATCTCACCTGCAAATCTACTCAAGACTCGTGTCCTCGCTGTCAGAGAATAAGGAGGTACCTGGAGAGGGACCTGCAGGACTGAGGACGCCTGTCCTGCATGGAGGCTACGAGGTCGAGGGACCAGGAAATGAACTCATGCCCTTTTATGTGACGTAACCCTAAGTGCA]
[+] EMBL CA589356 [TTTATGCTAATTTTATTCATACACAAAGCGCGAAGTTACATTAAACTTGCGTCTTCCTCGACACATACAGTATATTCCACCTGTCTCACTCTTACCTTTTCTGCTCGAGCGCCCCTAGCGGCCGATAGAAAAAATACATAAATAAGCCGCACTGTAGAATAAGCCACAGTGTTTAAAGTGTAGGAAAAAGTAGCGGCTTATAGTCCGGAAAATACGGTACTTTATATTTTAGTCATTAACTGACGCTTTTAGCATCAGGCCATTGAGACAAATGTGAATAAAATAGTGCCTTAAAATCCTAAATCACCCTGTACAAGGGCAACTAACAGTGCGGTGCTCTGCAGAGGAAGGCAAGAGGGATATAAATAAAAGCTCACCAAAGCTCCTTCCATCTGAAGCTGCTGATTCTTCCCCGCTCTCGTTTTTCAGGTGTAAAGATTGCAAAACTGTGTTTCATCTCACCTGCAAATCTACTCAAGACTCGTGTCCTCGCTGTCAGAGAATAAGGAGGTACCTGGAGAGGGACCTGCAGGACTGAGGACGCCTGTCCTGCATGGAGGCTACGAGGTCGAGGGACCAGGAAATGAACTCATGCCCTTTTATGTGACGTAACCCTAAGTGCA]
consensusID : consensus_412#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence
[ACAACTGCGTGTCTAATGCATGAATCATTTAGCTCAAATACAGTACACCCTAAAAGTGATGGTTCCTGCCCCTGAATCACAGACACAAGAGGAAAATCATGTCAATACAGAATAAGGCACAATCAAAAATTTGGTAATTAAGAACAAGTGAAGAGCCGTCGTCCGTCTTCCAGACCCCAAACTAAAGTCACTGCTGGGTGAATATGTAGCAGTTGCTGCAGACAGCAATAATAGAAAGATCCTCCTGCACCGGCGCTCCTTTATTTGGTTGAATTAGAAACGAGAGAGGTAATAAAGTTAGAGGCGATTAGCCTGGTCAGCATCATCAGGTCCACTTTGCCTTTACGCTAACAACGCTAATAATGCAGCCCCCTCCTCTGACACACCTTTCTCTCCATTCCTTTTATTTCTAAACTCATAATTGCACTTAGGGTTACGTCACATAAAAGGGCATGAGTTCATTTCC]
[+] EMBL CA331567 [ACAACTGCGTGTCTAATGCATGAATCATTTAGCTCAAATACAGTACACCCTAAAAGTGATGGTTCCTGCCCCTGAATCACAGACACAAGAGGAAAATCATGTCAATACAGAATAAGGCACAATCAAAAATTTGGTAATTAAGAACAAGTGAAGAGCCGTCGTCCGTCTTCCAGACCCCAAACTAAAGTCACTGCTGGGTGAATATGTAGCAGTTGCTGCAGACAGCAATAATAGAAAGATCCTCCTGCACCGGCGCTCCTTTATTTGGTTGAATTAGAAACGAGAGAGGTAATAAAGTTAGAGGCGATTAGCCTGGTCAGCATCATCAGGTCCACTTTGCCTTTACGCTAACAACGCTAATAATGCAGCCCCCTCCTCTGACACACCTTTCTCTCCATTCCTTTTATTTCTAAACTCATAATTGCACTTAGGGTTACGTCACATAAAAGGGCATGAGTTCATTTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_412#0 TTTATGCTAATTTTATTCATACACAAAGCGCGAAGTTACATTAAACTTGCGTCTTCCTCG 60
consensus_412#1 -----------------------------ACAACTGCGTGTCTAATGCATGAATCATTTA 31
* * * ** * * *
consensus_412#0 ACACATACAGTATATTCCACCTGTCTCACTCTTACCTTTTCTGCTCGAGCGCCCCTAGCG 120
consensus_412#1 GCTCA---AATACAGTACACC---CTAAAAGTGATGGTTCCTGCCCCTGAATCACAGACA 85
* ** * ** * * **** ** * * * ** **** * * * * *
consensus_412#0 GCCGATAGAAAAAATACATAAATAAGCCGCACTGTAGAATAAGCCACAGTGTTTAAAGTG 180
consensus_412#1 --CAAGAGGAAAATCATGTCAATACAGAATAAGGCACAATCA-----AAAATTTGGTAAT 138
* * ** **** * * **** * * * *** * * ***
consensus_412#0 TAGGAAAAAGTAGCGGCTTATAGTCCGGAAAATACGGTACTTTATATTTTAGTCATTAAC 240
consensus_412#1 TAAGAACAAGTGAAGAGCCGTCGTCCGTC---TTCCAGACCCCAAACTAAAGTCACTGCT 195
** *** **** * * ***** * * ** * * * ***** *
consensus_412#0 TGACGCTTTTAGCATCAGGCCATTGAGACAAATGTGAATAAAATAGTGCCTTAAAATCCT 300
consensus_412#1 GGGTG-----AATATGTAGCAGTTGCTGCAGACAGCAATAA----------TAGAA---- 236
* * * ** ** *** ** * ***** ** **
consensus_412#0 AAATCACCCTGTACAAGGGCAACTAACAGTGCGGTGCTCTGCAGAGGAAGGCAAGAGGGA 360
consensus_412#1 AGATCCTCCTGCACCGGCGC---------TCCTTTATTTGGTTGAATTAGAAACGAGAGA 287
* *** **** ** * ** * * * * * ** ** * *** **
consensus_412#0 TATAAATAAAAGCTCACCAAAGCTCCTTCCATCTGAAGCTGCTGATTCTTCCCCGCTCTC 420
consensus_412#1 GGTAA-TAAAG--TTAGAGGCGATTAGCCTGGTCAGCATCATCAGGTCCACTTTGCCTTT 344
*** **** * * * * * ** * ** *
consensus_412#0 GTTTTTCAGGTGTAAAGATTGCAAAACTGTGTTTCATCTCACCTGCAAATCTACTCAAGA 480
consensus_412#1 ACGCTAACAACGCTAATAATGCAGCCCCCTCCTCTGACACACCTTTCTCTCCATTCCT-- 402
* * ** * **** * * * * ***** ** * **
consensus_412#0 CTCGTGTCCTCGCT-GTCAGAGAATAAGGAGGTACCTGGAGAGGGACCTGCAGGACTGAG 539
consensus_412#1 TTTATTTCTAAACTCATAATTGCACTTAGGGTTACGTC-------ACATAAAAGGGCATG 455
* * ** ** * * * * * * *** * ** * * * *
consensus_412#0 GACGCCTGTCCTGCATGGAGGCTACGAGGTCGAGGGACCAGGAAATGAACTCATGCCCTT 599
consensus_412#1 AGTTCATTTCC------------------------------------------------- 466
* * ***
consensus_412#0 TTATGTGACGTAACCCTAAGTGCA 623
consensus_412#1 ------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |