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These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 413 cluster # 413       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_413#0 length = 578 sequences # 1  
 consensus_413#1 length = 272 sequences # 1  
consensusID : consensus_413#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 578
fasta sequence 
                              [GTCTTTATTGCAAAAAATAGTTCAGACACCGGTGCAGCATCCTAAAAACAGCGCTACACATTTAATGTGTAAATCCAACAAAAACAAAACAGAGACGTCTGATCCTGATACGCGAGTCGATGAGCGACTTCTCATTTGAGTCGGGGGATAAAAGATGCGCAACACAAAGGACATCAAAGGCTGAATATCTACAGGCGAGGAGGCGTGGTTTGCACATCAAAGCCAGGAGCTCAGTCTGAATCGCTGTCTCCGTCACTGTCCGCCTCCTTCACGTCGACGCCGAACTTGTACTCCTGGTCACAGCCCATGTAGGCGTCGCTCATGAAGTACAGCGTGTAGTTGTGGATGCCCATGGCCGGAGCAACAAAGTCCAGTTTCACCTTTGCTTTCTGCTGCAGCGTCAGCCTCTTGATGGAGATCAGGCTGTTGGACTTGGGGTCTCCGATCACCACCCACCAACCCTCCTCACGTTTCTGTGGGAACAGCGGTGCTATGACGGGCCCGGTCACCTCCTCCTCCCTCTCCAACTGAACCTGAACCAGGACCGGACTCCCGCTCTTGATGTTGTCCTTCTCCGC]

[+] EMBL CA331573             [GTCTTTATTGCAAAAAATAGTTCAGACACCGGTGCAGCATCCTAAAAACAGCGCTACACATTTAATGTGTAAATCCAACAAAAACAAAACAGAGACGTCTGATCCTGATACGCGAGTCGATGAGCGACTTCTCATTTGAGTCGGGGGATAAAAGATGCGCAACACAAAGGACATCAAAGGCTGAATATCTACAGGCGAGGAGGCGTGGTTTGCACATCAAAGCCAGGAGCTCAGTCTGAATCGCTGTCTCCGTCACTGTCCGCCTCCTTCACGTCGACGCCGAACTTGTACTCCTGGTCACAGCCCATGTAGGCGTCGCTCATGAAGTACAGCGTGTAGTTGTGGATGCCCATGGCCGGAGCAACAAAGTCCAGTTTCACCTTTGCTTTCTGCTGCAGCGTCAGCCTCTTGATGGAGATCAGGCTGTTGGACTTGGGGTCTCCGATCACCACCCACCAACCCTCCTCACGTTTCTGTGGGAACAGCGGTGCTATGACGGGCCCGGTCACCTCCTCCTCCCTCTCCAACTGAACCTGAACCAGGACCGGACTCCCGCTCTTGATGTTGTCCTTCTCCGC]




>consensus_413#0
GTCTTTATTGCAAAAAATAGTTCAGACACCGGTGCAGCATCCTAAAAACAGCGCTACACA
TTTAATGTGTAAATCCAACAAAAACAAAACAGAGACGTCTGATCCTGATACGCGAGTCGA
TGAGCGACTTCTCATTTGAGTCGGGGGATAAAAGATGCGCAACACAAAGGACATCAAAGG
CTGAATATCTACAGGCGAGGAGGCGTGGTTTGCACATCAAAGCCAGGAGCTCAGTCTGAA
TCGCTGTCTCCGTCACTGTCCGCCTCCTTCACGTCGACGCCGAACTTGTACTCCTGGTCA
CAGCCCATGTAGGCGTCGCTCATGAAGTACAGCGTGTAGTTGTGGATGCCCATGGCCGGA
GCAACAAAGTCCAGTTTCACCTTTGCTTTCTGCTGCAGCGTCAGCCTCTTGATGGAGATC
AGGCTGTTGGACTTGGGGTCTCCGATCACCACCCACCAACCCTCCTCACGTTTCTGTGGG
AACAGCGGTGCTATGACGGGCCCGGTCACCTCCTCCTCCCTCTCCAACTGAACCTGAACC
AGGACCGGACTCCCGCTCTTGATGTTGTCCTTCTCCGC

consensusID : consensus_413#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 272
fasta sequence 
                              [GGAAGTCCAGTTTCACCTACAGAGGGGTGGGGAAGGGGTGGGGGGCAACAGATGTGAAACAAGAGCCAGGCTAAAGAGCACTAATCACAGCGGACCCCCGTCACCCACCTTTGCTTTCTGCTGCAGCGTCAGCCTCTTGATGGAGATCAGGCTGTTGGACTTGGGGTCTCCGATCACCACCCACCAACCCTCCTCACGTTTCTGCAGGGCGGACAACAGTCAAACGTCAGTGTCGGGCCTCGGTACCTGCCAGGAACCGAGCTCCTCCATCC]

[+] EMBL FR0060891            [GGAAGTCCAGTTTCACCTACAGAGGGGTGGGGAAGGGGTGGGGGGCAACAGATGTGAAACAAGAGCCAGGCTAAAGAGCACTAATCACAGCGGACCCCCGTCACCCACCTTTGCTTTCTGCTGCAGCGTCAGCCTCTTGATGGAGATCAGGCTGTTGGACTTGGGGTCTCCGATCACCACCCACCAACCCTCCTCACGTTTCTGCAGGGCGGACAACAGTCAAACGTCAGTGTCGGGCCTCGGTACCTGCCAGGAACCGAGCTCCTCCATCC]




>consensus_413#1
GGAAGTCCAGTTTCACCTACAGAGGGGTGGGGAAGGGGTGGGGGGCAACAGATGTGAAAC
AAGAGCCAGGCTAAAGAGCACTAATCACAGCGGACCCCCGTCACCCACCTTTGCTTTCTG
CTGCAGCGTCAGCCTCTTGATGGAGATCAGGCTGTTGGACTTGGGGTCTCCGATCACCAC
CCACCAACCCTCCTCACGTTTCTGCAGGGCGGACAACAGTCAAACGTCAGTGTCGGGCCT
CGGTACCTGCCAGGAACCGAGCTCCTCCATCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_413#0      GTCTTTATTGCAAAAAATAGTTCAGACACCGGTGCAGCATCCTAAAAACAGCGCTACACA 60
consensus_413#1      ------------------------------------------------------------
                                                                                 

consensus_413#0      TTTAATGTGTAAATCCAACAAAAACAAAACAGAGACGTCTGATCCTGATACGCGAGTCGA 120
consensus_413#1      ------------------------------------------------------------
                                                                                 

consensus_413#0      TGAGCGACTTCTCATTTGAGTCGGGGGATAAAAGATGCGCAACACAAAGGACATCAAAGG 180
consensus_413#1      ------------------------------------------------------------
                                                                                 

consensus_413#0      CTGAATATCTACAGGCGAGGAGGCGTGGTTTGCACATCAAAGCCAGGAGCTCAGTCTGAA 240
consensus_413#1      ------------------------------------------------------------
                                                                                 

consensus_413#0      TCGCTGTCTCCGTCACTGTCCGCCTCCTTCACGTCGACGCCGAACTTGTACTCCTGGTCA 300
consensus_413#1      ----------------------------------GGAAGTCCAGTTTCACCTACAGAGGG 26
                                                        ** * * *  **   ** * *    

consensus_413#0      CAGCCCATGTAGGCGTCGCTCATGAAGTACAGCGTGTAGTTGTGGATGCCCATGGCCGGA 360
consensus_413#1      GTGGGGAAG-GGGTGGGGGGCAACAGATGTGAAACAAGAGCCAGGCTAAAGAGCACTAAT 85
                       *   * *  ** *  *  **  *  *               ** *    *   *    

consensus_413#0      -GCAACAAAGTCCAGTT--TCACCTTTGCTTTCTGCTGCAGCGTCAGCCTCTTGATGGAG 417
consensus_413#1      CACAGCGGACCCCCGTCACCCACCTTTGCTTTCTGCTGCAGCGTCAGCCTCTTGATGGAG 145
                       ** *  *  ** **    ****************************************

consensus_413#0      ATCAGGCTGTTGGACTTGGGGTCTCCGATCACCACCCACCAACCCTCCTCACGTTTCTGT 477
consensus_413#1      ATCAGGCTGTTGGACTTGGGGTCTCCGATCACCACCCACCAACCCTCCTCACGTTTCTGC 205
                     *********************************************************** 

consensus_413#0      GGGA---ACAGCGGTGCTATGACGGGCCCGGTCACCTCCTCCTCCCTCTCCAACTGAACC 534
consensus_413#1      AGGGCGGACAACAGTCAAACGTCAGTGTCGG--GCCTCGGTACCTGCCAGGAACCGAGCT 263
                      **    *** * **   * * * *   ***   ****     *   *   *** ** * 

consensus_413#0      TGAACCAGGACCGGACTCCCGCTCTTGATGTTGTCCTTCTCCGC 578
consensus_413#1      C---CTCCATCC-------------------------------- 272
                         *     **


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)