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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_437#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence
[TAGATTTAATTCAGTTTAATACAAGGCAATAAAACATACAAACAACTTACACAACACGACCCAGAACAATAATAAAATGTATTATTAGTGACTAAGGAATTAAAATGTCATCCCAGCCCCACCCCTGATGTAACTGTCAAGCTGAGAGCTATAAAGTGCGTCCCTGCTGTATGTAATCACCAAAAAGGCAGCTATTTCAGTATTTTTTTCTAAAGAAAGTTGAATATTTTAGGCACTAAAGGAGCCTTGTGATCACTTAAAAAACAAAAGCTCTGTTCCAAATACACAATATTTATCAGCCTTTTAATTTGTCAAAAGCTATTATTCACAGCAACTCAAAATCCACTTTACTTTCAACATTCAGGTGATCGAAACCGTATCTTCCCTTGCATTGCAAATATAGTATTAAAAAGCATCCAGCAGTTTTGTCTGTGATCAACACATCAGCATTTTTGTCCTATGGAGCAGTCAGTTCTTCCCTCTGGCAGCAAAGGTCCCCTTGATGATTCCAAGACCTCATAGGTGGTTCCTGTCCAGAACTGCCTCATCTCTTTCCTGTAGCCAGCCACTGCAGCGGCGGTGATCAGGGTGAAGGGAACCAGGTA]
[+] EMBL CA331805 [TAGATTTAATTCAGTTTAATACAAGGCAATAAAACATACAAACAACTTACACAACACGACCCAGAACAATAATAAAATGTATTATTAGTGACTAAGGAATTAAAATGTCATCCCAGCCCCACCCCTGATGTAACTGTCAAGCTGAGAGCTATAAAGTGCGTCCCTGCTGTATGTAATCACCAAAAAGGCAGCTATTTCAGTATTTTTTTCTAAAGAAAGTTGAATATTTTAGGCACTAAAGGAGCCTTGTGATCACTTAAAAAACAAAAGCTCTGTTCCAAATACACAATATTTATCAGCCTTTTAATTTGTCAAAAGCTATTATTCACAGCAACTCAAAATCCACTTTACTTTCAACATTCAGGTGATCGAAACCGTATCTTCCCTTGCATTGCAAATATAGTATTAAAAAGCATCCAGCAGTTTTGTCTGTGATCAACACATCAGCATTTTTGTCCTATGGAGCAGTCAGTTCTTCCCTCTGGCAGCAAAGGTCCCCTTGATGATTCCAAGACCTCATAGGTGGTTCCTGTCCAGAACTGCCTCATCTCTTTCCTGTAGCCAGCCACTGCAGCGGCGGTGATCAGGGTGAAGGGAACCAGGTA]
consensusID : consensus_437#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence
[CATTACAAAGGATTAAATCACACAAGTGAGAAAGAGAAGTGTTCCTCATTTGCTGCCACCATAATTGACAAAAATATCTCTGTCATGTGATTTCTGTTTCCTCTTTTGTTTCTTCTCTGTTCATCTGTGTATTTATCTCATCAGTAGGTCAGCGTGCGCTATATGAGCCATGTAAATTTGTGTATCTACTGCTCAGCTCAGCCTGACACCATGTTTCCAAAGCAGATGTGCAGAAATGTCTGCTACACCAGCGTGAACAGTCAGAGTCACGACAAGCTTTGTCTCCCCAGCTGCCGGTGGTGATGCGTGTGCCGCGCTTCTCGGCCTGGGCTCTGAACATGTGCGGGATGCAGTTCTCCATTCTTGGTTTTGGAGATATCATCGTTCCAGGTCTCTTGGTAGCCTACTGCAGCAGATTTGACGTCCGGATCAACAGCAGAAACAAGGTCTACTTCATCAGCTCCTGCATAGCTTATCTGCTGGGAATAATCATGACATTTGCTGTGATGCTGCTGTCTGGAATGGGCCAGCCTGCCTTGCTCTACCTGGTTCCCTTCACCCTGATC]
[+] EMBL CA846775 [CATTACAAAGGATTAAATCACACAAGTGAGAAAGAGAAGTGTTCCTCATTTGCTGCCACCATAATTGACAAAAATATCTCTGTCATGTGATTTCTGTTTCCTCTTTTGTTTCTTCTCTGTTCATCTGTGTATTTATCTCATCAGTAGGTCAGCGTGCGCTATATGAGCCATGTAAATTTGTGTATCTACTGCTCAGCTCAGCCTGACACCATGTTTCCAAAGCAGATGTGCAGAAATGTCTGCTACACCAGCGTGAACAGTCAGAGTCACGACAAGCTTTGTCTCCCCAGCTGCCGGTGGTGATGCGTGTGCCGCGCTTCTCGGCCTGGGCTCTGAACATGTGCGGGATGCAGTTCTCCATTCTTGGTTTTGGAGATATCATCGTTCCAGGTCTCTTGGTAGCCTACTGCAGCAGATTTGACGTCCGGATCAACAGCAGAAACAAGGTCTACTTCATCAGCTCCTGCATAGCTTATCTGCTGGGAATAATCATGACATTTGCTGTGATGCTGCTGTCTGGAATGGGCCAGCCTGCCTTGCTCTACCTGGTTCCCTTCACCCTGATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_437#0 TAGATTTAATTCAGTTTAATACAAGGCAATAAAACATACAAACAACTTACACAACACGAC 60
consensus_437#1 ----------------CATTACAAAGGATTAAATCACACAAGTGAGAAAGAGAA-GTGTT 43
* ***** * * **** ** **** * * * ** *
consensus_437#0 CCAGAACAATAATAAAATGTATTATTAGTGACTAAGGAATTAAAATGTCATCCCAGCCCC 120
consensus_437#1 CCTCATTTGCTGCCAC---CATAATTGACAAAAATATCTCTGTCATGTGATTTCTGTTTC 100
** * * ** *** * * * **** ** * * *
consensus_437#0 ACCCCTGATGTAA---CTGTCAAGCTGAG-AGCTATAAAGTGCGTCCCTGCTGTATGTAA 176
consensus_437#1 CTCTTTTGTTTCTTCTCTGTTCATCTGTGTATTTATCTCATCAGTAGGT-CAGCGTGCGC 159
* * * * **** * *** * * *** * ** * * * **
consensus_437#0 T-CACCAAAAAGGCAGCTATTTCAGTATTTTTTTCTAAAGAAAGTTGAATATTTTAGGCA 235
consensus_437#1 TATATGAGCCATGTAA--ATTTGTGTATCTACTGCTCAGCTCAGCCTGACACCAT-GTTT 216
* * * * * * **** **** * * ** * ** * * * *
consensus_437#0 CTAAAGGAGCCTTGTGATCACTTAAAAAACAAAAGCTCTGTT--CCAAATACACAATATT 293
consensus_437#1 CCAAAGCAGATGTGCAGAAATGTCTGCTACACCAGCGTGAACAGTCAGAGTCACGACAAG 276
* **** ** ** * * *** *** ** * *** * *
consensus_437#0 TATCAGCCTTTTAATTTGTCAAAAGCTAT-TATTCACAGCAACTCAAAATCCACTTTACT 352
consensus_437#1 CTTT-GTCTCCCCAGCTGCCGGTGGTGATGCGTGTGCCGCGCTTCTCGGCCTG---GGCT 332
* * ** * ** * * ** * * ** ** * **
consensus_437#0 TTCAACATTCAGGTGATCGAAACCGTATCTTCCCTTGCATTGCAAATATAGT-ATTAAAA 411
consensus_437#1 CTGAACATGTGCGGGATGCAGTTCT--CCATTCTTGGTTTTGGAGATATCATCGTTCCAG 390
* ***** * *** * * * * * * * *** * **** * ** *
consensus_437#0 AGCATCCAGCAGTTTTGT-CTGTGATCAACACATCAGCATTTTTGTCCTATGGAGCAGTC 470
consensus_437#1 GTCTCTTGGTAGCCTACTGCAGCAGATTTGACGTCCGGATCAACAGCAGAAACAAGGTCT 450
* * ** * * * * ** ** * ** * * *
consensus_437#0 AGTTCTTCC-CTCTGGCAGCAAAGGTCCCCTTG--ATGATTCCAAGACCTCATAGGTGGT 527
consensus_437#1 ACTTCATCAGCTCCTGCATAGCTTATCTGCTGGGAATAATCATGACATTTGCTGTGATGC 510
* *** ** *** *** ** ** * ** ** * * * * * *
consensus_437#0 TCCTGTCCAGAACTGCCTCATCT-CTTTCCTGTAGCCAGCCACTGCAGCGGCGGTGATCA 586
consensus_437#1 TGCTGTCTGGAATGGGCCAGCCTGCCTTGCTCTACCTGGTTCCCTTCACCCTGATC---- 566
* ***** *** * * ** * ** ** ** * * * * * *
consensus_437#0 GGGTGAAGGGAACCAGGTA 605
consensus_437#1 -------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |