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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_442#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence
[CAGTGCTGGAACCTTCTGGATGTTTGCTTTTATGTGCATCTTCAATGTCATCTTCACCATAGCTTTCATCCCAGAGACAAAAGGCAAAACTCTGGAACAGATCGAAGCAACTTTCAGGGGAACATCGGGTCCCTGAATCCACATCCTCCTGACTCATCCACAAAAAGATAATCTCATGTTTCTGAACCAACTGACACTGTGAAAACAGATGTGGATTTTTTTGATACGTAAAACATTTTTTGGCTAAGCTAATACATACTAGTAGTTTTCAGGTAAATTCTTTAAAAAGTGTGCATTATTGTTTAATCTTTGTTCAGTGTCAGAGATCACACGCGGGTGTTTTCACGAGCGCGACACGCTGGCCTACCTCCAGAATGACAGGTGCACACTGCCCCCTGCTGGGATCTCCGTCGTAGCTCAGCTGCAGTTCTATCTGCACTATGGTTAATCTAAATCAAAAGGAAGGAGGACAATGAAAATCAGGTAAATAATTATGAAGGTTTTTTCTTCTGTCTGGATTTTTTCTTTGATTATCCAGAATTCTCACTACTAAAATCAATATTTAAAGAAAATAATTACTAAAATTATATTGATGGAATATTACTACTGATTGAAGT]
[+] EMBL CA846610 [CAGTGCTGGAACCTTCTGGATGTTTGCTTTTATGTGCATCTTCAATGTCATCTTCACCATAGCTTTCATCCCAGAGACAAAAGGCAAAACTCTGGAACAGATCGAAGCAACTTTCAGGGGAACATCGGGTCCCTGAATCCACATCCTCCTGACTCATCCACAAAAAGATAATCTCATGTTTCTGAACCAACTGACACTGTGAAAACAGATGTGGATTTTTTTGATACGTAAAACATTTTTTGGCTAAGCTAATACATACTAGTAGTTTTCAGGTAAATTCTTTAAAAAGTGTGCATTATTGTTTAATCTTTGTTCAGTGTCAGAGATCACACGCGGGTGTTTTCACGAGCGCGACACGCTGGCCTACCTCCAGAATGACAGGTGCACACTGCCCCCTGCTGGGATCTCCGTCGTAGCTCAGCTGCAGTTCTATCTGCACTATGGTTAATCTAAATCAAAAGGAAGGAGGACAATGAAAATCAGGTAAATAATTATGAAGGTTTTTTCTTCTGTCTGGATTTTTTCTTTGATTATCCAGAATTCTCACTACTAAAATCAATATTTAAAGAAAATAATTACTAAAATTATATTGATGGAATATTACTACTGATTGAAGT]
consensusID : consensus_442#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 472 fasta sequence
[TTTTTTTTACTATTGAGGTTGAATTCAAGTGTTTAATTAATCAGATTAATGCATGATACATAACTGGGGGGTGGGGGTAAAAACATCCCAGCTGAATGAAAATAAAATACTTTCTTCATCAACTGTTGAGTACCTTTAATGTGACTTCCCCCTTTGTGCCAAAATCCCAAAAATAATGACAAACAACCATTGTAATGCTAGTATGTTTCATTCTATTTTATATCACCAAATATATTGACTGGTCCAATGAAGACAGTTTGCACTGAATGTAAACAGACTCACTTCCCAAAAGAAACACAAAGCTCTAATTTTACAAATGTCAGCACTGTACCAACAGTGTATAAGGTTTCAGAAAATCCTCAGTCTCAATTACCCCTGAAAGTATATTCTACAGATAGTGATTTTGTAAAAAGTTTCAAAACTTCAATCAGTAGTAATATTCCATCAATATAATTTTAGTAATTATTTTCTT]
[+] EMBL CA331839 [TTTTTTTTACTATTGAGGTTGAATTCAAGTGTTTAATTAATCAGATTAATGCATGATACATAACTGGGGGGTGGGGGTAAAAACATCCCAGCTGAATGAAAATAAAATACTTTCTTCATCAACTGTTGAGTACCTTTAATGTGACTTCCCCCTTTGTGCCAAAATCCCAAAAATAATGACAAACAACCATTGTAATGCTAGTATGTTTCATTCTATTTTATATCACCAAATATATTGACTGGTCCAATGAAGACAGTTTGCACTGAATGTAAACAGACTCACTTCCCAAAAGAAACACAAAGCTCTAATTTTACAAATGTCAGCACTGTACCAACAGTGTATAAGGTTTCAGAAAATCCTCAGTCTCAATTACCCCTGAAAGTATATTCTACAGATAGTGATTTTGTAAAAAGTTTCAAAACTTCAATCAGTAGTAATATTCCATCAATATAATTTTAGTAATTATTTTCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_442#0 CAGTGCTGGAACCTTCTGGATGTTTGCTTTTATGTGCATCTTCAATGTCATCTTCACCAT 60
consensus_442#1 -----------------------------------------------------------T 1
*
consensus_442#0 AGCTTTCATCCCAGAGACAAAAGGCAAAACTCTGGAACAGATCGAAGCAACTTTCAGGGG 120
consensus_442#1 TTTTTTTACTATTGAGGTTGAATTCAAGTGTTT--AATTAATCAGATTAATGCATGATAC 59
*** * *** ** *** * * ** *** * **
consensus_442#0 AACATCGGGTCCCTGAATCCACATCCTCCTGACTCATCCACAAAAAGATAATCTCATGTT 180
consensus_442#1 ATAACTGGGGGGTGGGGGTAAAAACATCCCAGCTGAATGAAAATAAAATACT-------T 112
* * *** * * * * *** ** * * ** ** *** * *
consensus_442#0 TCTGAACCAACTGACACTGTGAAAACAGATGTGGATTTTTTTGATACGTAAAACATTTTT 240
consensus_442#1 TCTTCATCAACTGT-----------------TGAGTACCTTTAATGTGACTTCCCCCTTT 155
*** * ****** ** * *** ** * * ***
consensus_442#0 TGGCTAAGCTAATACATACTAGTAGTTTTCAGGTAAATTCTTTAAAAAGTGTGCATTATT 300
consensus_442#1 GTGCCAAA-------ATCCCAAAAATAATGACAAACAACCATTGTAATGCTAGTAT---- 204
** ** ** * * * * * * * * * ** ** * * **
consensus_442#0 GTTTAATCTTTGTTCAGTGTCAGAGATCACACGCGGGTGTTTTCACGAGCGCGACACGCT 360
consensus_442#1 GTTTCAT-TCTATTTTATATCACCAAATATAT-TGACTGGTCCAATGAA---GACAGTTT 259
**** ** * * ** * *** * * * * ** * * ** **** *
consensus_442#0 GGCCTACCTCCAGAATGACAGGTGCACACTGCCCCCTGCTGGGATCTCCGTCGTAGCTC- 419
consensus_442#1 GCACTGAATGTAAACAGAC---------TCACTTCCCAAAAGAAACACAA----AGCTCT 306
* ** * * * *** * ** * * * * *****
consensus_442#0 AGCTGCAGTTCTATCTGCACTATGGTTAATCTAAATCAAAAGGAAGGAGGACAATGAAAA 479
consensus_442#1 AATTTTACAAATGTCAGCACTGTACCAA---CAGTGTATAAGGTTTCAGAAAATCCTCAG 363
* * * * ** ***** * * * * **** ** * * *
consensus_442#0 TCAGGTAAATAATTATGAAGGTTTTTTCTTCTGTCTGGATTTTTTCTTTGATTATCCAGA 539
consensus_442#1 TC--TCAATTACCCCTGAAAGTATATTCTACAGA-TAGTGATTTTGTAAAAAGTTTCAAA 420
** ** ** **** ** * **** * * * * **** * * * ** *
consensus_442#0 ATTCTCACTACTAAAATCAATATTTAAAGAAAATAATTACTAAAATTATATTGATGGAAT 599
consensus_442#1 ACTTCAATCAGTAG---TAATATTCCATCAATATAATTTTAGTAATTATTTTCTT----- 472
* * * * ** ****** * ** ****** ****** ** *
consensus_442#0 ATTACTACTGATTGAAGT 617
consensus_442#1 ------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |