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These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 452 cluster # 452       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_452#0 length = 597 sequences # 1  
consensus_452#1 length = 305 sequences # 1  

consensusID : consensus_452#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 597
fasta sequence
                              [AAAAATAATTTATTCTCTATAGTTAATGTATCAAGTGATTGTGAAGTTTTCCTTTTATATGGAGTCAACTAGAACGTACAAAAGCATTATTTTCCTTTACATTAATAGCATTATTTTTGGTTTTGCAGGTAAAAAATAAAAAAAATCACATTTCATGTATCTTGCCAGCAGAAATGGGAGGAGCTTGTTTATTGCTTTTGCCCCTTTCAGGGTGTGTTTGCACGGAGTCGTCCTCTCCTCTAGCCCAGGCTGATCTGCCCCCCAAACACGGTGATCATCAGAATGATGGTGAAGCCGCTGAGCATCCCCAGGTTCTGGATCAGGAAGAAGACCATCTTGGAGGAGGCGTGGGCCGGGTCCTGGGCTATGCTGTCCATCTCAGGGAACATGTCTGCCAGGGCAATGTACAGGAACATTCCTCCAGCAATGGCAAAGATCACACCAGGGGGAAAGGTGCTTCCGATCATGATCCCTAAAACCAGGCCGATGTAGCACGACATCGCAGACAGCAGGTTGAAGAAAATGGCCTGTGGGACGCTCATGCCAGCGTTCAGCAGGATCACCAAATCCTCCCAGTTCGTGGGGAAACTCCTCACA]

[+] EMBL CA331932             [AAAAATAATTTATTCTCTATAGTTAATGTATCAAGTGATTGTGAAGTTTTCCTTTTATATGGAGTCAACTAGAACGTACAAAAGCATTATTTTCCTTTACATTAATAGCATTATTTTTGGTTTTGCAGGTAAAAAATAAAAAAAATCACATTTCATGTATCTTGCCAGCAGAAATGGGAGGAGCTTGTTTATTGCTTTTGCCCCTTTCAGGGTGTGTTTGCACGGAGTCGTCCTCTCCTCTAGCCCAGGCTGATCTGCCCCCCAAACACGGTGATCATCAGAATGATGGTGAAGCCGCTGAGCATCCCCAGGTTCTGGATCAGGAAGAAGACCATCTTGGAGGAGGCGTGGGCCGGGTCCTGGGCTATGCTGTCCATCTCAGGGAACATGTCTGCCAGGGCAATGTACAGGAACATTCCTCCAGCAATGGCAAAGATCACACCAGGGGGAAAGGTGCTTCCGATCATGATCCCTAAAACCAGGCCGATGTAGCACGACATCGCAGACAGCAGGTTGAAGAAAATGGCCTGTGGGACGCTCATGCCAGCGTTCAGCAGGATCACCAAATCCTCCCAGTTCGTGGGGAAACTCCTCACA]


>consensus_452#0 AAAAATAATTTATTCTCTATAGTTAATGTATCAAGTGATTGTGAAGTTTTCCTTTTATAT GGAGTCAACTAGAACGTACAAAAGCATTATTTTCCTTTACATTAATAGCATTATTTTTGG TTTTGCAGGTAAAAAATAAAAAAAATCACATTTCATGTATCTTGCCAGCAGAAATGGGAG GAGCTTGTTTATTGCTTTTGCCCCTTTCAGGGTGTGTTTGCACGGAGTCGTCCTCTCCTC TAGCCCAGGCTGATCTGCCCCCCAAACACGGTGATCATCAGAATGATGGTGAAGCCGCTG AGCATCCCCAGGTTCTGGATCAGGAAGAAGACCATCTTGGAGGAGGCGTGGGCCGGGTCC TGGGCTATGCTGTCCATCTCAGGGAACATGTCTGCCAGGGCAATGTACAGGAACATTCCT CCAGCAATGGCAAAGATCACACCAGGGGGAAAGGTGCTTCCGATCATGATCCCTAAAACC AGGCCGATGTAGCACGACATCGCAGACAGCAGGTTGAAGAAAATGGCCTGTGGGACGCTC ATGCCAGCGTTCAGCAGGATCACCAAATCCTCCCAGTTCGTGGGGAAACTCCTCACA



consensusID : consensus_452#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 305
fasta sequence
                              [TGATACATTAACTATAGAGAATAAATTGGTTTTTCAGCCTTTTATTGTGTGAAATACCTCATCGGTGCTTCAGTGGAAACTGGCATAAGATGTGTTTTTATGTGGACAGCAGATTTACGACCTCTGTGACATTCATAAGTGCTGCTTTTAGATTCTACTGTGCCGATTACACCTTTGAGAATCTTCTACTGTCAGATTTAACATCACATTTCTACACAATAAGGCCTTAAATTTGATCGCTTGATGGTTTGTGATCGTGTTGTGAAGCTGGTATCACCAGGGGTCTGACATGTGCCTTGTGTTGT]

[+] EMBL FR0059576            [TGATACATTAACTATAGAGAATAAATTGGTTTTTCAGCCTTTTATTGTGTGAAATACCTCATCGGTGCTTCAGTGGAAACTGGCATAAGATGTGTTTTTATGTGGACAGCAGATTTACGACCTCTGTGACATTCATAAGTGCTGCTTTTAGATTCTACTGTGCCGATTACACCTTTGAGAATCTTCTACTGTCAGATTTAACATCACATTTCTACACAATAAGGCCTTAAATTTGATCGCTTGATGGTTTGTGATCGTGTTGTGAAGCTGGTATCACCAGGGGTCTGACATGTGCCTTGTGTTGT]


>consensus_452#1 TGATACATTAACTATAGAGAATAAATTGGTTTTTCAGCCTTTTATTGTGTGAAATACCTC ATCGGTGCTTCAGTGGAAACTGGCATAAGATGTGTTTTTATGTGGACAGCAGATTTACGA CCTCTGTGACATTCATAAGTGCTGCTTTTAGATTCTACTGTGCCGATTACACCTTTGAGA ATCTTCTACTGTCAGATTTAACATCACATTTCTACACAATAAGGCCTTAAATTTGATCGC TTGATGGTTTGTGATCGTGTTGTGAAGCTGGTATCACCAGGGGTCTGACATGTGCCTTGT GTTGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_452#0      AAAAATAATTTATTCTCTATAGTTAATGTATCAAGTGATTGTGAAGTTTTCCTTTTATAT 60
consensus_452#1      ---------------------------------------------------------TGA 3
                                                                              *  

consensus_452#0      GGAGTCAACTAGAACGTACAAAAGCATTATTTTCCTTTACATTAATAGCATTATTT--TT 118
consensus_452#1      TACATTAACTATAGAGAATAAATTGGTTTTTCAGCCTTTTATTGTGTGAAATACCTCATC 63
                         * ***** *  * * ***    ** **   * **  ***    * * **  *  * 

consensus_452#0      GGTTTTGCAGGTAAAAAATAAAAAAAATCACATTTCATGTATCTTGCCAGCAGAAATGGG 178
consensus_452#1      GGTGCTTCAG-TGGAAACTGGCATAAGATGTGTTTT---TATGTGGACAGCAGATTTACG 119
                     ***  * *** *  *** *   * **      ***    *** * * *******  *  *

consensus_452#0      AGGAGCTTGTTTATTGCTTTTGCCCCTTTCAGGGTGTGTTTGCACGGAGTCGTCCTCTCC 238
consensus_452#1      ACCTCTGTGACATTCATAAGTGCTGCTTTTAGATTCTACT-GTGCCGA-TTACACCTTTG 177
                     *      **    *      ***  **** **  * *  * *  * ** *    *  *  

consensus_452#0      TCTAGCCCAGGCTGATCTGCCCCCCAAACACGGTGATCATCAGAATGATGGTGAAGCCGC 298
consensus_452#1      AGAATCTTCTACTG-TCAGATTTAACATCACATT--TCTACACAATAAGGCCTTAAAT-T 233
                        * *     *** ** *       * ***  *  **  ** *** * *    *     

consensus_452#0      TGAGCATCCCCAGGTTCTGGATCAGG--AAGAAGACCATCTTGGAGGAGGCGTGGGCCGG 356
consensus_452#1      TGATCGCTTGATGGTTTGTGATCGTGTTGTGAAGCTGGTATCACCAGGGGTCTGACATGT 293
                     *** *       ****   ****  *    ****    * *     * **  **    * 

consensus_452#0      GTCCTGGGCTATGCTGTCCATCTCAGGGAACATGTCTGCCAGGGCAATGTACAGGAACAT 416
consensus_452#1      GCCTTGTGTTGT------------------------------------------------ 305
                     * * ** * * *                                                

consensus_452#0      TCCTCCAGCAATGGCAAAGATCACACCAGGGGGAAAGGTGCTTCCGATCATGATCCCTAA 476
consensus_452#1      ------------------------------------------------------------
                                                                                 

consensus_452#0      AACCAGGCCGATGTAGCACGACATCGCAGACAGCAGGTTGAAGAAAATGGCCTGTGGGAC 536
consensus_452#1      ------------------------------------------------------------
                                                                                 

consensus_452#0      GCTCATGCCAGCGTTCAGCAGGATCACCAAATCCTCCCAGTTCGTGGGGAAACTCCTCAC 596
consensus_452#1      ------------------------------------------------------------
                                                                                 

consensus_452#0      A 597
consensus_452#1      -
                      




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)