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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_453#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 753 fasta sequence
[CATTCGCTAAGATGAGCCAATTGAAGTGAGTTGTCTGGACCTGTATCCCTTTAAGAGATCCAAGAAACCAGACGCTAGGAGGTTTGGCACGTCCGCTGAATCTTCACACATGAATCTGGTGCCTGTGAAAGGAGCAAAGTCAGCTTCACGGCCATCAACAAGATCTTCGCCAGCCTCTCTTGAGGAAGCAAAAAGGGAAATTGACAAATGTTTAGAAGAGATTTGGCTTCTTCCTGAAGGGGAACGGAACAAAGCCTTTAAGCGCTTGTACCTGAGGTGGCACCCGGACAAAAACATCAACTGCCACAATCTCGCCACTGAAGCCTTCAAATACTTGAAAAACCGAATTGATGATCTGCTCAACGGCAGAGCTCAAAACGCAGGCTCGGCCCATCGAGGGACAAATCAAGATTTTAGAAATTTCTACGGCAGTTGGAATCAGGAGGCCAATTATCACAGGCGGGGCTGGGAGAGATTCTACGGAGCTCACCGCCATTACAACTTTTGGGCCTTTAATCGAAATGTTCCACAGCCCAACAGAAAGGAGGCCCAGCGGTGGTGTCGGCAGGCTCGCTGCGATCTCCAGGCAGCACGCAAAGATGTGGACGGAAGCAGTACAGAATGGTGCCTGTTCAAAGTCCATCAGGCGGTGGAGAAGTCGCTCATAGCCGCAGTGTATAAAAGACAAGGTCAGCATCCCAACAGCTCCATTACAGACATGGCCACGCAAGTGTCCCACTACAGCGACCTGCT]
[+] EMBL CA845968 [CATTCGCTAAGATGAGCCAATTGAAGTGAGTTGTCTGGACCTGTATCCCTTTAAGAGATCCAAGAAACCAGACGCTAGGAGGTTTGGCACGTCCGCTGAATCTTCACACATGAATCTGGTGCCTGTGAAAGGAGCAAAGTCAGCTTCACGGCCATCAACAAGATCTTCGCCAGCCTCTCTTGAGGAAGCAAAAAGGGAAATTGACAAATGTTTAGAAGAGATTTGGCTTCTTCCTGAAGGGGAACGGAACAAAGCCTTTAAGCGCTTGTACCTGAGGTGGCACCCGGACAAAAACATCAACTGCCACAATCTCGCCACTGAAGCCTTCAAATACTTGAAAAACCGAATTGATGATCTGCTCAACGGCAGAGCTCAAAACGCAGGCTCGGCCCATCGAGGGACAAATCAAGATTTTAGAAATTTCTACGGCAGTTGGAATCAGGAGGCCAATTATCACAGGCGGGGCTGGGAGAGATTCTACGGAGCTCACCGCCATTACAACTTTTGGGCCTTTAATCGAAATGTTCCACAGCCCAACAGAAAGGAGGCCCAGCGGTGGTGTCGGCAGGCTCGCTGCGATCTCCAGGCAGCACGCAAAGATGTGGACGGAAGCAGTACAGAATGGTGCCTGTTCAAAGTCCATCAGGCGGTGGAGAAGTCGCTCATAGCCGCAGTGTATAAAAGACAAGGTCAGCATCCCAACAGCTCCATTACAGACATGGCCACGCAAGTGTCCCACTACAGCGACCTGCT]
consensusID : consensus_453#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence
[GACAATGACTGCCTTTATTTTAAAGTTGTAGAATGATAATACAAGTAAACTTGATCCACATTGGAATTGTATTAGTTCATCATAGAGGTTTGGTTAATGGTGTCATCAAAGACTAAATATGAACAGTGAGTAAGCAGTTAACAATTGATAGGAAGAAAAAACTTGACTGAATTTAAAATAAAAAAGGTGTACACACATTGATTATGGATCTTTAGCCAGTGATCGATGTCAACATTAACGGTCGTCAATAATAATACTGTTGGTTCTCAGTGATAAATGTAGCCAACGACTTGCAAAACTGATATTGATAAAATGTTTAGTCCCAACGAACAGCATCGAACTGGTTAAACACGTTTGTCTCTAATTCACGTAGGACTCTATTACTCTGAGAAGCTGGGACGCTTGGTCCAGGGCCTGTCGTCCATTCTCTGCGCTGAACTGTTCGTTTGGAATGTTTGGAAACGGGTGGAAGTTGGGATACTGGGTCTTTTTGCCGTCCACCCCCAATCGCTTCAGGGTCTCCACAATCTGCGGCACGCCCCTCAGCAGGTCGCTGTAGTGGGACACTTGCGTGGCCATGTC]
[+] EMBL CA331934 [GACAATGACTGCCTTTATTTTAAAGTTGTAGAATGATAATACAAGTAAACTTGATCCACATTGGAATTGTATTAGTTCATCATAGAGGTTTGGTTAATGGTGTCATCAAAGACTAAATATGAACAGTGAGTAAGCAGTTAACAATTGATAGGAAGAAAAAACTTGACTGAATTTAAAATAAAAAAGGTGTACACACATTGATTATGGATCTTTAGCCAGTGATCGATGTCAACATTAACGGTCGTCAATAATAATACTGTTGGTTCTCAGTGATAAATGTAGCCAACGACTTGCAAAACTGATATTGATAAAATGTTTAGTCCCAACGAACAGCATCGAACTGGTTAAACACGTTTGTCTCTAATTCACGTAGGACTCTATTACTCTGAGAAGCTGGGACGCTTGGTCCAGGGCCTGTCGTCCATTCTCTGCGCTGAACTGTTCGTTTGGAATGTTTGGAAACGGGTGGAAGTTGGGATACTGGGTCTTTTTGCCGTCCACCCCCAATCGCTTCAGGGTCTCCACAATCTGCGGCACGCCCCTCAGCAGGTCGCTGTAGTGGGACACTTGCGTGGCCATGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_453#0 CATTCGCTAAGATGAGCCAATTGAAGTGAGTTGTCTGGACCTGTATCCCTTTAAGAGATC 60
consensus_453#1 --------------------------------GACAATGACTGCCTTTATTTTAAAGTTG 28
* * *** * *** * ** *
consensus_453#0 CAAGAAACCAGACGCTAGGAGGTTTGGCACGTCCGCTGAATCTTCACACATGAATCTGGT 120
consensus_453#1 TAGAATGATA-ATACAAGTAAACTTGATCCA--CATTGGAATTGTATTAGTTCATC---- 81
* * * * * ** * *** * * ** * * * * ***
consensus_453#0 GCCTGTGAAAGGAGCAAAGTCAGCTTCACGGCCATCAACAAGATCTTCGCCAGCCTCTCT 180
consensus_453#1 -------ATAGAGGTTTGGTTAATGGTGTCATCAAAGACTAAATATGAACAG-------- 126
* ** * ** * ** ** * ** * *
consensus_453#0 TGAGGAAGCAAAAAGGGAAATTGACAAATGTTTAGAAGAGATTTGGCTTCTTCCTGAAGG 240
consensus_453#1 TGAGTAAGCAGTTAAC--AATTGATAGGA----AGAAAAAACTTGACTGAATTTAAAATA 180
**** ***** * ****** * **** * * *** ** * **
consensus_453#0 GGAACGGAACAAAGCCTTTAAGCGCTTGTACCTGAGGTGGCACCCGGACAAAAACATCAA 300
consensus_453#1 AAAAAGGTGTACACACATTGATTA-TGGATCTTTAGCCAGTGATCG-ATGTCAACATTAA 238
** ** * * * ** * * * * * ** * ** * ***** **
consensus_453#0 CTGCCA-CAATCTCGCCACTGAAGCCTTCAAATACTTGAAAAACCGAATTGATGATCTGC 359
consensus_453#1 CGGTCGTCAATAATAATACTGTTGGTTCTCAGT----GATAAATGTAGCCAACGACTTGC 294
* * * **** **** * * * * ** *** * * ** ***
consensus_453#0 TCAACGGCAGAGCTCAAAACGCAGGCTCGGCCCATCGAGGGACAAATCAAGATT-TTAGA 418
consensus_453#1 AAAACTGATATTGATAAAATGT---TTAGTCCCAACGAACAGCA--TCGAACTGGTTAAA 349
*** * **** * * * **** *** ** ** * * *** *
consensus_453#0 AATTTCTACGGCAGTTGGAATCAGGAGGCCAATTATCACAGGCGGGGCTGGGAGAGATTC 478
consensus_453#1 CACGTTTGTCTCTAATTCACGTAGGACTCTATTACTCTGA---GAAGCTGGGACGCTTGG 406
* * * * * * **** * * * ** * * ******* *
consensus_453#0 TACGGAGCTCACCG-CCATTACAACTTTTGGGCC-TTTAATCGAAATGTTCCACAGCCCA 536
consensus_453#1 TCCAGGGCCTGTCGTCCATTCTCTGCGCTGAACTGTTCGTTTGGAATGTTTGGAAA--CG 464
* * * ** ** ***** ** * ** * * ****** * *
consensus_453#0 ACAGAAAGGAGGCCCAGCGGTGGTGTCGGCAGGCTCGCTGCGATCTCCAGGCAGCACGCA 596
consensus_453#1 GGTGGAAGTTGGGATACTGGGTCTTTTTGCCGTCCACCCCCAATCGCTTCAGGGT-CTCC 523
* *** ** * ** * * ** * * * * *** * * * *
consensus_453#0 AAGATGTGGACGGAAGCAGTACAGAATGGTGCCTGTTCAAAGTCCATCAGGCGGTGGAGA 656
consensus_453#1 ACAATCTGCG-GCACGCCCCTCAGCA-GGTCGCTGTAGTGGGACACTTGCGTGGCCATGT 581
* ** ** * * ** *** * *** **** * * * * ** *
consensus_453#0 AGTCGCTCATAGCCGCAGTGTATAAAAGACAAGGTCAGCATCCCAACAGCTCCATTACAG 716
consensus_453#1 C----------------------------------------------------------- 582
consensus_453#0 ACATGGCCACGCAAGTGTCCCACTACAGCGACCTGCT 753
consensus_453#1 -------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |