cluster # 514

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Takifugu rubripes
cluster # 514 cluster # 514 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_514#0 length = 376 sequences # 1

consensus_514#1 length = 91 sequences # 1

consensusID : consensus_514#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 376
fasta sequence

                              [ACGCTTGACCTTGATTTATGACTGGAAGCACAGGCAGATTTTTTAAAAAAAAGAAAAAAAAGTGAGGAGGCGGACTACATGTCTCATGATTAGACAGACATATCCTGGGTGCAAAAAATGTCTCCCAGTAATCTGAGACTAACTGCACTGAAATAACTTTCGGCATTCCCAACAGTTTTATGAGACCACCTGTTAATAATAAAAGGGTGGCAGACAGGTGAACGGCCTCCACCTGATATTAAAATTGTCAGAGCAGTATAATCGTGCAGACACTTCCAGGTTGTGAAGGGCTTTAAAATGTGTCAATTTCATGTACCATGATTCAAAATTTTTAAACGCATTTGAATGCTACACATGGGTCCTTAAAAACATGAAC]

[+] EMBL CA332623             [ACGCTTGACCTTGATTTATGACTGGAAGCACAGGCAGATTTTTTAAAAAAAAGAAAAAAAAGTGAGGAGGCGGACTACATGTCTCATGATTAGACAGACATATCCTGGGTGCAAAAAATGTCTCCCAGTAATCTGAGACTAACTGCACTGAAATAACTTTCGGCATTCCCAACAGTTTTATGAGACCACCTGTTAATAATAAAAGGGTGGCAGACAGGTGAACGGCCTCCACCTGATATTAAAATTGTCAGAGCAGTATAATCGTGCAGACACTTCCAGGTTGTGAAGGGCTTTAAAATGTGTCAATTTCATGTACCATGATTCAAAATTTTTAAACGCATTTGAATGCTACACATGGGTCCTTAAAAACATGAAC]




>consensus_514#0
ACGCTTGACCTTGATTTATGACTGGAAGCACAGGCAGATTTTTTAAAAAAAAGAAAAAAA
AGTGAGGAGGCGGACTACATGTCTCATGATTAGACAGACATATCCTGGGTGCAAAAAATG
TCTCCCAGTAATCTGAGACTAACTGCACTGAAATAACTTTCGGCATTCCCAACAGTTTTA
TGAGACCACCTGTTAATAATAAAAGGGTGGCAGACAGGTGAACGGCCTCCACCTGATATT
AAAATTGTCAGAGCAGTATAATCGTGCAGACACTTCCAGGTTGTGAAGGGCTTTAAAATG
TGTCAATTTCATGTACCATGATTCAAAATTTTTAAACGCATTTGAATGCTACACATGGGT
CCTTAAAAACATGAAC

consensusID : consensus_514#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 91
fasta sequence

                              [CAGTCATAAATCAAGGTCAAGCGTTCTATTTTGTTTAATAAATATTAAAGTTTGCAGTAACTGTAAGGTCAAACTTCTATTTCAAACGGGT]

[+] EMBL CA588571             [CAGTCATAAATCAAGGTCAAGCGTTCTATTTTGTTTAATAAATATTAAAGTTTGCAGTAACTGTAAGGTCAAACTTCTATTTCAAACGGGT]




>consensus_514#1
CAGTCATAAATCAAGGTCAAGCGTTCTATTTTGTTTAATAAATATTAAAGTTTGCAGTAA
CTGTAAGGTCAAACTTCTATTTCAAACGGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_514#0      ACGCTTGACCTTGATTTATGACTGGAAGCACAGGCAGATTTTTTAAAAAAAAGAAAAAAA 60
consensus_514#1      ------------------------------------------------------------
                                                                                 

consensus_514#0      AGTGAGGAGGCGGACTACATGTCTCATGATTAGACAGACATATCCTGGGTGCAAAAAATG 120
consensus_514#1      ------------------------------------------------------------
                                                                                 

consensus_514#0      TCTCCCAGTAATCTGAGACTAACTGCACTGAAATAACTTTCGGCATTCCCAACAGTTTTA 180
consensus_514#1      ------------------------------------------------------------
                                                                                 

consensus_514#0      TGAGACCACCTGTTAATAATAAAAGGGTGGCAGACAGGTGAACGGCCTCCACCTGATATT 240
consensus_514#1      -------------CAGTCATAAATCAAGGTCAAGC-GTTCTATTTTGTTTAATAAATATT 46
                                   * * *****     * **  * * *  *     *  *    *****

consensus_514#0      AAAATTGTCAG-AGCAGTATAATCGTGCAGACACTTCCAGGTTGTGAAGGGCTTTAAAAT 299
consensus_514#1      AAAGTTTGCAGTAACTGTAAGGTCAAACTTCTATTTCAAACGGGT--------------- 91
                     *** **  *** * * ***   **   *    * *** *    **               

consensus_514#0      GTGTCAATTTCATGTACCATGATTCAAAATTTTTAAACGCATTTGAATGCTACACATGGG 359
consensus_514#1      ------------------------------------------------------------
                                                                                 

consensus_514#0      TCCTTAAAAACATGAAC 376
consensus_514#1      -----------------

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)