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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_53#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 451 fasta sequence
[CTAAAATGTCCGCTTTCACCAACAAGTTTAGCGCTTACACGATGAGTCAACTCAACGAGATCCTAGAGGATGACGAGAAACTTACGAAGATGGTGTTGGACATGGAGGAGATGCAGGAAGTCCAGCAGAGCAAAGAAAAGACCCTGGCCAACAACAGAACCTTGGCAGAGCAGAACCTCATCCTGCAGCCCAACCTGGAACATAAAAAAGAGCAGCTCACCAAGACCTACCGATTTCTGCAGGAGAACTTTGAGTCCTATCAGCTCCGAAAATCTACTTTAGATGGTGGGAATCAACCTCAGTAAAGAAGGAAGGTCCATGTTGTCTGGAAACCTTCAGACTGACTTTGGCCGAGAGGATCCCAGTCACAGAGGGAGATAAACCACACATTCAGGTTGACTGTTGTCATTATTGGGCTGATCATAAACTCAAATGTCTACAAGAAAAAAGG]
[+] EMBL FR0059270 [CTAAAATGTCCGCTTTCACCAACAAGTTTAGCGCTTACACGATGAGTCAACTCAACGAGATCCTAGAGGATGACGAGAAACTTACGAAGATGGTGTTGGACATGGAGGAGATGCAGGAAGTCCAGCAGAGCAAAGAAAAGACCCTGGCCAACAACAGAACCTTGGCAGAGCAGAACCTCATCCTGCAGCCCAACCTGGAACATAAAAAAGAGCAGCTCACCAAGACCTACCGATTTCTGCAGGAGAACTTTGAGTCCTATCAGCTCCGAAAATCTACTTTAGATGGTGGGAATCAACCTCAGTAAAGAAGGAAGGTCCATGTTGTCTGGAAACCTTCAGACTGACTTTGGCCGAGAGGATCCCAGTCACAGAGGGAGATAAACCACACATTCAGGTTGACTGTTGTCATTATTGGGCTGATCATAAACTCAAATGTCTACAAGAAAAAAGG]
consensusID : consensus_53#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence
[GTTTAGCGGGAGGCGATGACTCAACTCAACGAGACCCTAGAGGATGACGAGAAACTTACGAAGACGGTGTTGGACATGGAGGAGATGCAGGAAGTCCAGCAGAGCAAAGAAAAGACCCTGGCCAACAACAGAACCTTGGCAGAGCAGAACCTCATCCTGCAGCCCAACCTGGAACATAAAAAAGAGCAGCTCACCAAGACCTACCGATTTCTGCAGGAGAACTTTGAGTCCTATCAGCTCCGAAAATCTACTTTAGATCACAAGACAGGAAGCACATCTCTGGACACACTGCTGGCCTTGCTGCAGGCTGAGGGAGCTAAAATAGAGGAAGAGACAGAGAACATGGCCGACTCCTTCCTGGATGGGGAGATGACCCTGGA]
[+] EMBL FR0059469 [GTTTAGCGGGAGGCGATGACTCAACTCAACGAGACCCTAGAGGATGACGAGAAACTTACGAAGACGGTGTTGGACATGGAGGAGATGCAGGAAGTCCAGCAGAGCAAAGAAAAGACCCTGGCCAACAACAGAACCTTGGCAGAGCAGAACCTCATCCTGCAGCCCAACCTGGAACATAAAAAAGAGCAGCTCACCAAGACCTACCGATTTCTGCAGGAGAACTTTGAGTCCTATCAGCTCCGAAAATCTACTTTAGATCACAAGACAGGAAGCACATCTCTGGACACACTGCTGGCCTTGCTGCAGGCTGAGGGAGCTAAAATAGAGGAAGAGACAGAGAACATGGCCGACTCCTTCCTGGATGGGGAGATGACCCTGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_53#0 CTAAAATGTCCGCTTTCACCAACAAGTTTAGCGCTTACACGATGAGTCAACTCAACGAGA 60
consensus_53#1 -------------------------GTTTAGCGGG-AGGCGATGACTCAACTCAACGAGA 34
******** * ****** **************
consensus_53#0 TCCTAGAGGATGACGAGAAACTTACGAAGATGGTGTTGGACATGGAGGAGATGCAGGAAG 120
consensus_53#1 CCCTAGAGGATGACGAGAAACTTACGAAGACGGTGTTGGACATGGAGGAGATGCAGGAAG 94
***************************** *****************************
consensus_53#0 TCCAGCAGAGCAAAGAAAAGACCCTGGCCAACAACAGAACCTTGGCAGAGCAGAACCTCA 180
consensus_53#1 TCCAGCAGAGCAAAGAAAAGACCCTGGCCAACAACAGAACCTTGGCAGAGCAGAACCTCA 154
************************************************************
consensus_53#0 TCCTGCAGCCCAACCTGGAACATAAAAAAGAGCAGCTCACCAAGACCTACCGATTTCTGC 240
consensus_53#1 TCCTGCAGCCCAACCTGGAACATAAAAAAGAGCAGCTCACCAAGACCTACCGATTTCTGC 214
************************************************************
consensus_53#0 AGGAGAACTTTGAGTCCTATCAGCTCCGAAAATCTACTTTAGATGGTGGGAATCAACCTC 300
consensus_53#1 AGGAGAACTTTGAGTCCTATCAGCTCCGAAAATCTACTTTAGATCAC------------- 261
********************************************
consensus_53#0 AGTAAAGAAGGAAGGTCCATGTTGTCTGGAAACCTTCAGACTGACTTTGGCCGAGAGGAT 360
consensus_53#1 ----AAGACAGGAAGCACATCTC-TGGACACACTGCTGGCCTTGCTGCAGGCTGAGGGAG 316
**** * * * *** * * * ** * ** ** * * ***
consensus_53#0 CCCAGTCACAGAGGGAGATAAACCACACATTCAGGTTGACTGTTGTCATTATTGGGCTGA 420
consensus_53#1 CTAAAATAGAGGAAGAGACAGAGAACATGGCCGACT---CCTTCCTGGATGGGGAGATGA 373
* * * ** **** * * *** * * * * * * * * ***
consensus_53#0 TCATAAACTCAAATGTCTACAAGAAAAAAGG 451
consensus_53#1 CCCTGGA------------------------ 380
* * *
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |