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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_536#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence
[AAGGGCAAAGCCTGCAGCCAGCCAGAGGCGACGTTTTCTAACGAGGACACAGACAGTGATGATGTTGTATTTCCAGCCCTCCACGGCCAGATGGAGCAGTTTGCTGCATCGAAGATGTTCATCCTCATCTCCACGGTGATGACCTGGGCACTCACAGAACCACTGGATCCTGAGGATCCCACTCTTCCTCTGACTGACGAGCTCTTCTGGAGAAGAAGACCTCATCCCAACTTCAAATCCCACTGTGAGCTGGAGAAGAGGGTGGTCAAACTGGGCAAAATTAATAAGAGGGTTTTCTCCACATATGTGGTTGCTTCAGGATGCCTGTATGGGAAAGGGGAGCAGTTCCTGCACTACTTTTTCAAGACAGCCTGGCTGGGAGGACAACATGAAATTCTGCTTTTTGGAGATGGCAACAACGTTATTCCCATGATTCATGTCATTGACCTGGCAAGTGTGATTCAAAATGTGATCGAACAGCCACCTTTGCCAGGTTACCTGTTAGCTGTGGACAACTCCGACAACACCCTGGAAGAAATTGTAAAGATGGTTGCCTCTGTGCTTGGATCGGGGACGATCCAGAAGAAGCCA]
[+] EMBL CA332843 [AAGGGCAAAGCCTGCAGCCAGCCAGAGGCGACGTTTTCTAACGAGGACACAGACAGTGATGATGTTGTATTTCCAGCCCTCCACGGCCAGATGGAGCAGTTTGCTGCATCGAAGATGTTCATCCTCATCTCCACGGTGATGACCTGGGCACTCACAGAACCACTGGATCCTGAGGATCCCACTCTTCCTCTGACTGACGAGCTCTTCTGGAGAAGAAGACCTCATCCCAACTTCAAATCCCACTGTGAGCTGGAGAAGAGGGTGGTCAAACTGGGCAAAATTAATAAGAGGGTTTTCTCCACATATGTGGTTGCTTCAGGATGCCTGTATGGGAAAGGGGAGCAGTTCCTGCACTACTTTTTCAAGACAGCCTGGCTGGGAGGACAACATGAAATTCTGCTTTTTGGAGATGGCAACAACGTTATTCCCATGATTCATGTCATTGACCTGGCAAGTGTGATTCAAAATGTGATCGAACAGCCACCTTTGCCAGGTTACCTGTTAGCTGTGGACAACTCCGACAACACCCTGGAAGAAATTGTAAAGATGGTTGCCTCTGTGCTTGGATCGGGGACGATCCAGAAGAAGCCA]
consensusID : consensus_536#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 503 fasta sequence
[TGAGCCAGTCAGCAACTGGAGAAAGGTAACCACAGCAACAACTGAACAACAAACATGGCGGAGGACACGGCAGGATCCATACCCAAACGAGTTTTTATCAACAGCGTCGACTCTTACGCTTCAAGAAATATCGCCAAGTTTCTGTCTGAACGTCGGCTGGTATCCACCTATGAGGAGGATGAGACTGAGGAGCAGGAGCGAGCTTTTCAGCTCGTTGGAAGTGCTGACAGACGGGACGGAGGCAGCCCACATGTGCTGGAGGTGTATTCGAAAGCAAACAGAGATGAGCTGCTTTTGAAACTGATGCAGTGTGACGTTATTATTTACAACATTAGTGAGCATGCGGATCAAGTGGAGGAGGCCTTGTGGGCTGTGTCAGCCCTCCACGGCCAGATGGAGCAGTTTGCTGCATCGAAGATGTTCATCCTCATCTCCACGGTGATGACCTGGGCACTCACAGAACCACTGGATCCTGAGGATCCCACTCTTCCTCTGACTGACGA]
[+] EMBL CA590470 [TGAGCCAGTCAGCAACTGGAGAAAGGTAACCACAGCAACAACTGAACAACAAACATGGCGGAGGACACGGCAGGATCCATACCCAAACGAGTTTTTATCAACAGCGTCGACTCTTACGCTTCAAGAAATATCGCCAAGTTTCTGTCTGAACGTCGGCTGGTATCCACCTATGAGGAGGATGAGACTGAGGAGCAGGAGCGAGCTTTTCAGCTCGTTGGAAGTGCTGACAGACGGGACGGAGGCAGCCCACATGTGCTGGAGGTGTATTCGAAAGCAAACAGAGATGAGCTGCTTTTGAAACTGATGCAGTGTGACGTTATTATTTACAACATTAGTGAGCATGCGGATCAAGTGGAGGAGGCCTTGTGGGCTGTGTCAGCCCTCCACGGCCAGATGGAGCAGTTTGCTGCATCGAAGATGTTCATCCTCATCTCCACGGTGATGACCTGGGCACTCACAGAACCACTGGATCCTGAGGATCCCACTCTTCCTCTGACTGACGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_536#0 AAGGGCAAAGCCTGCAGCCAGCCAGAGGCGACGTTTTCTAACGAGGACACAGACAGTGAT 60
consensus_536#1 ------------TG-AGCCAGTCAGCAACTG--------GAGAAAGGTAACCACAGCAAC 39
** ****** *** * * * * * **** *
consensus_536#0 GATGTTGTATTTCCAGCCCTCCACGGCCAGATGGAGCAGTTTGCTGCATCGAAGATGTTC 120
consensus_536#1 AA--CTGAACAACAAACATGGCGGAG---GACACGGCAGGAT-CCATACCCAAA-----C 88
* ** * * * * * * ** **** * * * * ** *
consensus_536#0 ATCCTCATCTCCACGGTGATGACCTGGGCACTCACAGAACCACTGGATCCTGAGGATCCC 180
consensus_536#1 GAGTTTTTATCAACAGCGTCGACTCTTACGCTTCAAGAAATATCG-----CCAAGTTTCT 143
* * ** ** * * *** * ** **** * * * * * *
consensus_536#0 ACTCTTCCTCTGACTGACGAGCTCTTCTGGAGAAGA--AGACCTCATCCCAACTTCAAAT 238
consensus_536#1 GTCTGAACGTCGGCTGGTATCCACCTATGAGGAGGATGAGACTGAGGAGCAGGAGCGAGC 203
* * *** * * * ** ** ** **** ** * *
consensus_536#0 CCCACTGTGAGCTGGAGAAGAGGGTGGTCAAACTGGGCAAAATTAATAAGAGGGTTTTCT 298
consensus_536#1 TTTTCAGCTCGTTGGA----AGTGCTGACAGACGGGACGGAGGCAGCCCACATGTGCTGG 259
* * * **** ** * * ** ** ** * * * ** *
consensus_536#0 CCACATATGTGGTTGCT--TCAGGATGC-CTGTATGGGAAAGGGGAGCAGTTCCTGCACT 355
consensus_536#1 AGGTGTATTCGAAAGCAAACAGAGATGAGCTGCTTTTGAAACTGATGCAGTGTG-ACGTT 318
*** * ** **** *** * **** * ***** * *
consensus_536#0 ACTTTTTCAAGACAGCCTGGCTGGGAGGACAACATGAAATTCTGCTTTTTGGAGATGGCA 415
consensus_536#1 ATTATTTACAACATTAGTGAGCATGCGGATCAAGTGGAGGAGGCCTTGTGGGCTGTGTCA 378
* * *** * ** * *** * ** * *** * ** ** **
consensus_536#0 ACAACGTTATTCCCATGATTCATGTCATTGACCTGGCAAGTGTGATTCAAAATGTGATCG 475
consensus_536#1 GC-------CCTCCACGGCCAG----ATGGAGCAGTTTGCTGC-ATCGAAGATGTT---- 422
* *** * ** ** * * ** ** ** ****
consensus_536#0 AACAGCCACCTTTGCCAGGTTACCTGTTAGCTGTGGACAACTCCGACAACACCCTGGAAG 535
consensus_536#1 --CATCCTCATCTCCACGGTGAT------GACCTGGGCA-CTCACAGAAC-CACTGGA-- 470
** ** * * * * *** * * *** ** *** * *** * *****
consensus_536#0 AAATTGTAAAGATGGTTGCCTCTGTGCTTGGATCGGGGACGATCCAGAAGAAGCCA 591
consensus_536#1 ---TCCTGAGGAT--CCCACTCT-TCCTCTGACTGACGA----------------- 503
* * * *** **** * ** ** * **
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |