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Takifugu rubripes
cluster # 544 cluster # 544       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_544#0 length = 566 sequences # 1  
 consensus_544#1 length = 264 sequences # 1  
consensusID : consensus_544#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 566
fasta sequence 
                              [TGACCTCATTTTGATCCATCTATTTTCTATGCTATTATAGGTATCTAAGGCATTTTGTATATCAGTTATATAGTATAGCATTTAAAATATGTAGGTTAGTAATGTTTGAATTTAAAATTTCATGTGAACTACATTCTTTATCATTTTTACATAATTGTGGCAAGAGTTGCCTATAAATTGATGGTGTTGTGTGATACTTTTGTACACTGCGATACTGGACATCATGAGGATGCACCCTGTTGAAGGATAGTTATTGATCCGAGTTCAACATCATTGGCCAGGACGAGCCCAGCCTGATCATGGAAAGAGGGAGGCAGAAACTAGAAGTCCTGGACAGAGGATTCAGCCGGGAGTTGATGCTTGCTGGCCGTATATGCTTCAGCTGTGAGCAGATTTTTGCAGATCGGAAGTGCCTGGAGGAGCATGTATGTTCTGCGACAAGTTACATCTGCTCGTGTGGGACTGAGTTTTCGGAATACCAAGACATGCATGAACACAGCACAACACATGAACCGGGGCACCAAGTCCTTGATCATGAAACGATAAAGAAGCGCAGGCTGGAGAAA]

[+] EMBL CA332902             [TGACCTCATTTTGATCCATCTATTTTCTATGCTATTATAGGTATCTAAGGCATTTTGTATATCAGTTATATAGTATAGCATTTAAAATATGTAGGTTAGTAATGTTTGAATTTAAAATTTCATGTGAACTACATTCTTTATCATTTTTACATAATTGTGGCAAGAGTTGCCTATAAATTGATGGTGTTGTGTGATACTTTTGTACACTGCGATACTGGACATCATGAGGATGCACCCTGTTGAAGGATAGTTATTGATCCGAGTTCAACATCATTGGCCAGGACGAGCCCAGCCTGATCATGGAAAGAGGGAGGCAGAAACTAGAAGTCCTGGACAGAGGATTCAGCCGGGAGTTGATGCTTGCTGGCCGTATATGCTTCAGCTGTGAGCAGATTTTTGCAGATCGGAAGTGCCTGGAGGAGCATGTATGTTCTGCGACAAGTTACATCTGCTCGTGTGGGACTGAGTTTTCGGAATACCAAGACATGCATGAACACAGCACAACACATGAACCGGGGCACCAAGTCCTTGATCATGAAACGATAAAGAAGCGCAGGCTGGAGAAA]




>consensus_544#0
TGACCTCATTTTGATCCATCTATTTTCTATGCTATTATAGGTATCTAAGGCATTTTGTAT
ATCAGTTATATAGTATAGCATTTAAAATATGTAGGTTAGTAATGTTTGAATTTAAAATTT
CATGTGAACTACATTCTTTATCATTTTTACATAATTGTGGCAAGAGTTGCCTATAAATTG
ATGGTGTTGTGTGATACTTTTGTACACTGCGATACTGGACATCATGAGGATGCACCCTGT
TGAAGGATAGTTATTGATCCGAGTTCAACATCATTGGCCAGGACGAGCCCAGCCTGATCA
TGGAAAGAGGGAGGCAGAAACTAGAAGTCCTGGACAGAGGATTCAGCCGGGAGTTGATGC
TTGCTGGCCGTATATGCTTCAGCTGTGAGCAGATTTTTGCAGATCGGAAGTGCCTGGAGG
AGCATGTATGTTCTGCGACAAGTTACATCTGCTCGTGTGGGACTGAGTTTTCGGAATACC
AAGACATGCATGAACACAGCACAACACATGAACCGGGGCACCAAGTCCTTGATCATGAAA
CGATAAAGAAGCGCAGGCTGGAGAAA

consensusID : consensus_544#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 264
fasta sequence 
                              [AGAGGTGTGTTATAGACTAAGACTGGNCTCTATCGGCACTTTTGTTTTACCAATGAAAGGATAGTTATTGATCCGAGTTCAACATCATTGGCCAGGACGAGCCCAGCCTGATCATGGAAAGAGGGAGGCAGAAACTAGAAGTCCTGGACAGAGGATTCAGCCGGGAGTTGATGCTTGCTGGCCGTATATGCTTCAGCTGTGAGCAGATTTTTGCAGATCGGAAGTGCCTGGAGGAGCATGTATGTTCTGCGACAAGTTACATCT]

[+] EMBL FR0060876            [AGAGGTGTGTTATAGACTAAGACTGGNCTCTATCGGCACTTTTGTTTTACCAATGAAAGGATAGTTATTGATCCGAGTTCAACATCATTGGCCAGGACGAGCCCAGCCTGATCATGGAAAGAGGGAGGCAGAAACTAGAAGTCCTGGACAGAGGATTCAGCCGGGAGTTGATGCTTGCTGGCCGTATATGCTTCAGCTGTGAGCAGATTTTTGCAGATCGGAAGTGCCTGGAGGAGCATGTATGTTCTGCGACAAGTTACATCT]




>consensus_544#1
AGAGGTGTGTTATAGACTAAGACTGGNCTCTATCGGCACTTTTGTTTTACCAATGAAAGG
ATAGTTATTGATCCGAGTTCAACATCATTGGCCAGGACGAGCCCAGCCTGATCATGGAAA
GAGGGAGGCAGAAACTAGAAGTCCTGGACAGAGGATTCAGCCGGGAGTTGATGCTTGCTG
GCCGTATATGCTTCAGCTGTGAGCAGATTTTTGCAGATCGGAAGTGCCTGGAGGAGCATG
TATGTTCTGCGACAAGTTACATCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_544#0      TGACCTCATTTTGATCCATCTATTTTCTATGCTATTATAGGTATCTAAGGCATTTTGTAT 60
consensus_544#1      ------------------------------------------------------------
                                                                                 

consensus_544#0      ATCAGTTATATAGTATAGCATTTAAAATATGTAGGTTAGTAATGTTTGAATTTAAAATTT 120
consensus_544#1      ------------------------------------------------------------
                                                                                 

consensus_544#0      CATGTGAACTACATTCTTTATCATTTTTACATAATTGTGGCAAGAGTTGCCTATAAATTG 180
consensus_544#1      ------------------------------------------------------------
                                                                                 

consensus_544#0      ATGGTGTTGTGTGATACTTTTGTACACTGCGATACTGGACATCATGAGGATGCACCCTGT 240
consensus_544#1      --AGAGGTGTGTTATAGACTAAGACTGGNCTCTATCGGCACTTTTG----TTTTACCAAT 54
                        * * ***** ***   *   **    *  **  **   *  **    *    **  *

consensus_544#0      TGAAGGATAGTTATTGATCCGAGTTCAACATCATTGGCCAGGACGAGCCCAGCCTGATCA 300
consensus_544#1      GAAAGGATAGTTATTGATCCGAGTTCAACATCATTGGCCAGGACGAGCCCAGCCTGATCA 114
                       **********************************************************

consensus_544#0      TGGAAAGAGGGAGGCAGAAACTAGAAGTCCTGGACAGAGGATTCAGCCGGGAGTTGATGC 360
consensus_544#1      TGGAAAGAGGGAGGCAGAAACTAGAAGTCCTGGACAGAGGATTCAGCCGGGAGTTGATGC 174
                     ************************************************************

consensus_544#0      TTGCTGGCCGTATATGCTTCAGCTGTGAGCAGATTTTTGCAGATCGGAAGTGCCTGGAGG 420
consensus_544#1      TTGCTGGCCGTATATGCTTCAGCTGTGAGCAGATTTTTGCAGATCGGAAGTGCCTGGAGG 234
                     ************************************************************

consensus_544#0      AGCATGTATGTTCTGCGACAAGTTACATCTGCTCGTGTGGGACTGAGTTTTCGGAATACC 480
consensus_544#1      AGCATGTATGTTCTGCGACAAGTTACATCT------------------------------ 264
                     ******************************                              

consensus_544#0      AAGACATGCATGAACACAGCACAACACATGAACCGGGGCACCAAGTCCTTGATCATGAAA 540
consensus_544#1      ------------------------------------------------------------
                                                                                 

consensus_544#0      CGATAAAGAAGCGCAGGCTGGAGAAA 566
consensus_544#1      --------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)