These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_565#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence [CGATGTCAACAATACTGTCATGATGTTTGATTTTGCTGTTAAACGACATCGATTTTAGAGACACGACTAGTCCTTGAGGCATTTGCGTGTATTTCTGTGGTGCGTTCATCGTTTTGCTCTTGAATGCTTTTATCGGGTGTAGTTTTATGGAGTAAACTAACGTCTTACAAACCGCCGTCCATATCTGTCCCATACGTGTATTGTGGCAGCTCCGGCGGCTCCGGGACCGTGCGCGGACACCATGTCTTATCTGGGCAACGAGGAGGCCGTGAGGGAGCTGAGGAGAGCCCTGTCCAACCCTAATGTCCAGTCTGACCAGCTGAGATACAGAAACACTGTCCTCAAAGTCATCAGAGGGATGTCACAGGGCGTTGATGTGTCGGGCCTCTTCTCCGAGATGGTTAAAGCCTGCGCCTCAGTGGATATTGTTCAGAAAAAACTGGTCTACGTCTTCCTTTGTTCCTACCCGACTTTTAATCCAGAGCTGTCCCTGCTGGTCATCAACACGCTGAAGAAGGACTGCCCGGATCCCAAACCTATTGTCCGCAGGCTTGGCCTGAAGAAC] [+] EMBL CA333149 [CGATGTCAACAATACTGTCATGATGTTTGATTTTGCTGTTAAACGACATCGATTTTAGAGACACGACTAGTCCTTGAGGCATTTGCGTGTATTTCTGTGGTGCGTTCATCGTTTTGCTCTTGAATGCTTTTATCGGGTGTAGTTTTATGGAGTAAACTAACGTCTTACAAACCGCCGTCCATATCTGTCCCATACGTGTATTGTGGCAGCTCCGGCGGCTCCGGGACCGTGCGCGGACACCATGTCTTATCTGGGCAACGAGGAGGCCGTGAGGGAGCTGAGGAGAGCCCTGTCCAACCCTAATGTCCAGTCTGACCAGCTGAGATACAGAAACACTGTCCTCAAAGTCATCAGAGGGATGTCACAGGGCGTTGATGTGTCGGGCCTCTTCTCCGAGATGGTTAAAGCCTGCGCCTCAGTGGATATTGTTCAGAAAAAACTGGTCTACGTCTTCCTTTGTTCCTACCCGACTTTTAATCCAGAGCTGTCCCTGCTGGTCATCAACACGCTGAAGAAGGACTGCCCGGATCCCAAACCTATTGTCCGCAGGCTTGGCCTGAAGAAC] consensusID : consensus_565#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence [GTTTGATTTTGCTGTTAAACCACATCGATTTTAGAGACACGACTAGTCCTTGAGGCATTTGCGTGTATTTCTGTGCTCCGGCGGCTCCGGGACCGTGCGCGGACACCATGCCTTATCTGGGCAACGAGGAGGCCGTGAGGGAGCTGAGGAGAGCCCTGTCCAACCCTAATGTCCAGTCTGACCAGCTGAGATACAGAAACACTGTCCTCAAAGTCATCATATTTATGTCACAGGGCGTTGATGTGTCGGGCCTCTTCTCCGATATGGTTAAAGCCTGCGCCTCAGGGGATATTGTTCAGAAAAAACTGGGCTACGTCTTCCTTTGTTCCTACGCGACTTTAAATCCAGAGCTGTCCCTGCTG] [+] EMBL CA333341 [GTTTGATTTTGCTGTTAAACCACATCGATTTTAGAGACACGACTAGTCCTTGAGGCATTTGCGTGTATTTCTGTGCTCCGGCGGCTCCGGGACCGTGCGCGGACACCATGCCTTATCTGGGCAACGAGGAGGCCGTGAGGGAGCTGAGGAGAGCCCTGTCCAACCCTAATGTCCAGTCTGACCAGCTGAGATACAGAAACACTGTCCTCAAAGTCATCATATTTATGTCACAGGGCGTTGATGTGTCGGGCCTCTTCTCCGATATGGTTAAAGCCTGCGCCTCAGGGGATATTGTTCAGAAAAAACTGGGCTACGTCTTCCTTTGTTCCTACGCGACTTTAAATCCAGAGCTGTCCCTGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_565#0 CGATGTCAACAATACTGTCATGATGTTTGATTTTGCTGTTAAACGACATCGATTTTAGAG 60 consensus_565#1 ------------------------------------------------------------ consensus_565#0 ACACGACTAGTCCTTGAGGCATTTGCGTGTATTTCTGTGGTGCGTTCATCGTTTTGCTCT 120 consensus_565#1 ------------------------------------------------------------ consensus_565#0 TGAATGCTTTTATCGGGTGTAGTTTTATGGAGTAAACTAACGTCTTACAAACCGCCGTCC 180 consensus_565#1 -----------GTTTGATTTTGCTGT-TAAACCACATCGATTTTAGAGACACGACTAGTC 48 * * * * * * * * * * * * * * * ** * * consensus_565#0 ATATCTGTCCCATACGTGTATTGTGGCAGCTCCGGCGGCTCCGGGACCGTGCGCGGACAC 240 consensus_565#1 CT-TGAGGCATTTGCGTGTATTTCTGT-GCTCCGGCGGCTCCGGGACCGTGCGCGGACAC 106 * * * * * ******** * ******************************** consensus_565#0 CATGTCTTATCTGGGCAACGAGGAGGCCGTGAGGGAGCTGAGGAGAGCCCTGTCCAACCC 300 consensus_565#1 CATGCCTTATCTGGGCAACGAGGAGGCCGTGAGGGAGCTGAGGAGAGCCCTGTCCAACCC 166 **** ******************************************************* consensus_565#0 TAATGTCCAGTCTGACCAGCTGAGATACAGAAACACTGTCCTCAAAGTCATCAGAGGGAT 360 consensus_565#1 TAATGTCCAGTCTGACCAGCTGAGATACAGAAACACTGTCCTCAAAGTCATCATATTTAT 226 ***************************************************** * ** consensus_565#0 GTCACAGGGCGTTGATGTGTCGGGCCTCTTCTCCGAGATGGTTAAAGCCTGCGCCTCAGT 420 consensus_565#1 GTCACAGGGCGTTGATGTGTCGGGCCTCTTCTCCGATATGGTTAAAGCCTGCGCCTCAGG 286 ************************************ ********************** consensus_565#0 GGATATTGTTCAGAAAAAACTGGTCTACGTCTTCCTTTGTTCCTACCCGACTTTTAATCC 480 consensus_565#1 GGATATTGTTCAGAAAAAACTGGGCTACGTCTTCCTTTGTTCCTACGCGACTTTAAATCC 346 *********************** ********************** ******* ***** consensus_565#0 AGAGCTGTCCCTGCTGGTCATCAACACGCTGAAGAAGGACTGCCCGGATCCCAAACCTAT 540 consensus_565#1 AGAGCTGTCCCTGCTG-------------------------------------------- 362 **************** consensus_565#0 TGTCCGCAGGCTTGGCCTGAAGAAC 565 consensus_565#1 ------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |