These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_58#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 559 fasta sequence [CAGCATTATTTTGTGTCGTTTTATCTGCCCGTCGTTTGTGACGTTTTTTTGTTTTGTTTTAAATAGTTTTTTTTATTAACAATTCCCGTAATCTACGCGTTCGATTTTGTGAAAATGAAGCAGTGACATGGACTTTTGTCTGAAGCAGGTGCAGTCAGACTGCGAGGAGCTACTGAGCCGATTCCAACGATCAGAATCTGTCCGCTTCGAAAATTTCTCCGAAATATGGAGGGAAATGAAGTTCTTCCAGATTTTCTATGGGACGACGAAACGTCAAAAGAGAATGTTTGCACGTCTGATCCTGGACAAGGCCTACAGCTTTTTCCTGCCTCCATTCAGCTTTCAGATCCGAGTTGGAGCTCTTTACCTGTTGTACAGTCTGTATGGATGTCAGACAGCGTCACCTCAAGAACAGATCCGTGTTCCTCTGAAGGACTGGGAAGACATAAAGAGGTTTGAAAAGGATGCAGTGGATGCTCAGCACCTGGATGTTGTTTACATACTGCGACAGCTGATGGCGCAGAAAGCTTTCTACTTTACCGCCATGGCCACCCTGCTC] [+] EMBL BU808458 [CAGCATTATTTTGTGTCGTTTTATCTGCCCGTCGTTTGTGACGTTTTTTTGTTTTGTTTTAAATAGTTTTTTTTATTAACAATTCCCGTAATCTACGCGTTCGATTTTGTGAAAATGAAGCAGTGACATGGACTTTTGTCTGAAGCAGGTGCAGTCAGACTGCGAGGAGCTACTGAGCCGATTCCAACGATCAGAATCTGTCCGCTTCGAAAATTTCTCCGAAATATGGAGGGAAATGAAGTTCTTCCAGATTTTCTATGGGACGACGAAACGTCAAAAGAGAATGTTTGCACGTCTGATCCTGGACAAGGCCTACAGCTTTTTCCTGCCTCCATTCAGCTTTCAGATCCGAGTTGGAGCTCTTTACCTGTTGTACAGTCTGTATGGATGTCAGACAGCGTCACCTCAAGAACAGATCCGTGTTCCTCTGAAGGACTGGGAAGACATAAAGAGGTTTGAAAAGGATGCAGTGGATGCTCAGCACCTGGATGTTGTTTACATACTGCGACAGCTGATGGCGCAGAAAGCTTTCTACTTTACCGCCATGGCCACCCTGCTC] consensusID : consensus_58#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 254 fasta sequence [TTATTAACAATTCCCGTAATGTACGCGTTCGATTTTGTGAAAATGAAGCAGTGACATGGACTTTTGTCTGAAGCAGGTGCAGTCAGACTGCGAGGAGCTACTGAGCCGATTCCAACGATCAGAATCTGTCCGCTTCGAAAATTTCTCCGAAATATGGAGGGAAATGAAGTTCTTCCAGATTTTCTAGTAAATCTAATCTCGAACACACACACACACAGAGACATGGTGGATAGGGGTGCATCATCACTCTTCTT] [+] EMBL FR0063014 [TTATTAACAATTCCCGTAATGTACGCGTTCGATTTTGTGAAAATGAAGCAGTGACATGGACTTTTGTCTGAAGCAGGTGCAGTCAGACTGCGAGGAGCTACTGAGCCGATTCCAACGATCAGAATCTGTCCGCTTCGAAAATTTCTCCGAAATATGGAGGGAAATGAAGTTCTTCCAGATTTTCTAGTAAATCTAATCTCGAACACACACACACACAGAGACATGGTGGATAGGGGTGCATCATCACTCTTCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_58#0 CAGCATTATTTTGTGTCGTTTTATCTGCCCGTCGTTTGTGACGTTTTTTTGTTTTGTTTT 60 consensus_58#1 ------------------------------------------------------------ consensus_58#0 AAATAGTTTTTTTTATTAACAATTCCCGTAATCTACGCGTTCGATTTTGTGAAAATGAAG 120 consensus_58#1 ------------TTATTAACAATTCCCGTAATGTACGCGTTCGATTTTGTGAAAATGAAG 48 ******************** *************************** consensus_58#0 CAGTGACATGGACTTTTGTCTGAAGCAGGTGCAGTCAGACTGCGAGGAGCTACTGAGCCG 180 consensus_58#1 CAGTGACATGGACTTTTGTCTGAAGCAGGTGCAGTCAGACTGCGAGGAGCTACTGAGCCG 108 ************************************************************ consensus_58#0 ATTCCAACGATCAGAATCTGTCCGCTTCGAAAATTTCTCCGAAATATGGAGGGAAATGAA 240 consensus_58#1 ATTCCAACGATCAGAATCTGTCCGCTTCGAAAATTTCTCCGAAATATGGAGGGAAATGAA 168 ************************************************************ consensus_58#0 GTTCTTCCAGATTTTCTATGGGACGACGAAACGTCAAAAGAGAATGTTTGCACGTCTGAT 300 consensus_58#1 GTTCTTCCAGATTTTCTA---GTAAATCTAATCTCGAACACACACACACACA-GAGACAT 224 ****************** * * ** ** ** * ** * ** consensus_58#0 CCTGGACAAGGCCTACAGCTTTTTCCTGCCTCCATTCAGCTTTCAGATCCGAGTTGGAGC 360 consensus_58#1 GGTGGATAGGGG-TGCATCATCACTCTTCTT----------------------------- 254 **** * ** * ** * * ** * * consensus_58#0 TCTTTACCTGTTGTACAGTCTGTATGGATGTCAGACAGCGTCACCTCAAGAACAGATCCG 420 consensus_58#1 ------------------------------------------------------------ consensus_58#0 TGTTCCTCTGAAGGACTGGGAAGACATAAAGAGGTTTGAAAAGGATGCAGTGGATGCTCA 480 consensus_58#1 ------------------------------------------------------------ consensus_58#0 GCACCTGGATGTTGTTTACATACTGCGACAGCTGATGGCGCAGAAAGCTTTCTACTTTAC 540 consensus_58#1 ------------------------------------------------------------ consensus_58#0 CGCCATGGCCACCCTGCTC 559 consensus_58#1 ------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |