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These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 586 cluster # 586       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_586#0 length = 581 sequences # 1  
 consensus_586#1 length = 494 sequences # 1  
consensusID : consensus_586#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 581
fasta sequence 
                              [TTCTGTTTTTAAATAACTGCTCAGGAAGTCTTCTGATTTTCTAAATTACACCAGAAACATGATCTGGAACACCAACGAAACACAAAGTCAGAGTTCGGGGCTTGGTGACCTGGCTTTGTACGGCGGTCAAAGACGTTCCCTCAGAATTTACAGGCGCAGCTTGGCGAGTGGGAGGAGCCAAGTGAGCAGCAGCATCATCAGCAGCTCCAACAGTTCCAAGAGCATTTTTGACAGCAGCGATGCTGATCCCTTAAATTTGAAGGCTTTATATTTTACCTTTGCGTGCATCGTGATTTTAGGCCTTCCGATCATCTTTTTCGGTTTGAGGAGCATTGTTTCTCCTTTGAGACCAAAGGGTCCTGGAGCGATCTTCTCTCCAGTCTTTAATAAGAGACCCATTGATATTTGTGATGAGATGATGATGTACATAGATAAGCTCCAAGTTGAATTAGATGATGTGAAGGAAAAACTGAAACTGACCTATCAGGACCCAGATTCAAATTTCTGGACCAACTTTGCTCTGGAGTCTCATGGAGCCAAAGTGGACAAAAAACGATCCTCCAGCACCTATGGGAGGATCG]

[+] EMBL CA590259             [TTCTGTTTTTAAATAACTGCTCAGGAAGTCTTCTGATTTTCTAAATTACACCAGAAACATGATCTGGAACACCAACGAAACACAAAGTCAGAGTTCGGGGCTTGGTGACCTGGCTTTGTACGGCGGTCAAAGACGTTCCCTCAGAATTTACAGGCGCAGCTTGGCGAGTGGGAGGAGCCAAGTGAGCAGCAGCATCATCAGCAGCTCCAACAGTTCCAAGAGCATTTTTGACAGCAGCGATGCTGATCCCTTAAATTTGAAGGCTTTATATTTTACCTTTGCGTGCATCGTGATTTTAGGCCTTCCGATCATCTTTTTCGGTTTGAGGAGCATTGTTTCTCCTTTGAGACCAAAGGGTCCTGGAGCGATCTTCTCTCCAGTCTTTAATAAGAGACCCATTGATATTTGTGATGAGATGATGATGTACATAGATAAGCTCCAAGTTGAATTAGATGATGTGAAGGAAAAACTGAAACTGACCTATCAGGACCCAGATTCAAATTTCTGGACCAACTTTGCTCTGGAGTCTCATGGAGCCAAAGTGGACAAAAAACGATCCTCCAGCACCTATGGGAGGATCG]




>consensus_586#0
TTCTGTTTTTAAATAACTGCTCAGGAAGTCTTCTGATTTTCTAAATTACACCAGAAACAT
GATCTGGAACACCAACGAAACACAAAGTCAGAGTTCGGGGCTTGGTGACCTGGCTTTGTA
CGGCGGTCAAAGACGTTCCCTCAGAATTTACAGGCGCAGCTTGGCGAGTGGGAGGAGCCA
AGTGAGCAGCAGCATCATCAGCAGCTCCAACAGTTCCAAGAGCATTTTTGACAGCAGCGA
TGCTGATCCCTTAAATTTGAAGGCTTTATATTTTACCTTTGCGTGCATCGTGATTTTAGG
CCTTCCGATCATCTTTTTCGGTTTGAGGAGCATTGTTTCTCCTTTGAGACCAAAGGGTCC
TGGAGCGATCTTCTCTCCAGTCTTTAATAAGAGACCCATTGATATTTGTGATGAGATGAT
GATGTACATAGATAAGCTCCAAGTTGAATTAGATGATGTGAAGGAAAAACTGAAACTGAC
CTATCAGGACCCAGATTCAAATTTCTGGACCAACTTTGCTCTGGAGTCTCATGGAGCCAA
AGTGGACAAAAAACGATCCTCCAGCACCTATGGGAGGATCG

consensusID : consensus_586#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 494
fasta sequence 
                              [TTTTTAAATAACTGCTCAGGAAGTCTTCTGATTTTCTAAATTACACCAGAAACATGATCTGGAACACCAACGAAACACAAAGTCAGAGTTCGGGGCTTGGTGACCTGGCTTTGTACGGCGGTCAAAGACGTTCCCTCAGAATTTACAGGCGCAGCTTGGCGAGTGGGAGGAGCCAAGTGAGCAGCAGCATCATCAGCAGCTCCAACAGTTCCAAGAGCATTTTTGACAGCAGCGATGCTGATCCCTTAAATTTGAAGGCTTTATATTTTACCTTTGCGTGCATCGTGATTTTAGGTAAGTCATCTGTCATAGACATATATGAGATGTTTGATCTGCTGTTCTGAATGAATCTTTTCCCCCTCCATCAGGCCTTCCGATCATCTTTTTCGGTTTGAGGAGCATTGTTTCTCCTTTGAGACCAAAGGGTCCTGGAGCGATCTTCTCTCCAGTCTTTAATAAGGTATTTACATGATCCAAAGTAATAGAAACAGCTG]

[+] EMBL CA333321             [TTTTTAAATAACTGCTCAGGAAGTCTTCTGATTTTCTAAATTACACCAGAAACATGATCTGGAACACCAACGAAACACAAAGTCAGAGTTCGGGGCTTGGTGACCTGGCTTTGTACGGCGGTCAAAGACGTTCCCTCAGAATTTACAGGCGCAGCTTGGCGAGTGGGAGGAGCCAAGTGAGCAGCAGCATCATCAGCAGCTCCAACAGTTCCAAGAGCATTTTTGACAGCAGCGATGCTGATCCCTTAAATTTGAAGGCTTTATATTTTACCTTTGCGTGCATCGTGATTTTAGGTAAGTCATCTGTCATAGACATATATGAGATGTTTGATCTGCTGTTCTGAATGAATCTTTTCCCCCTCCATCAGGCCTTCCGATCATCTTTTTCGGTTTGAGGAGCATTGTTTCTCCTTTGAGACCAAAGGGTCCTGGAGCGATCTTCTCTCCAGTCTTTAATAAGGTATTTACATGATCCAAAGTAATAGAAACAGCTG]




>consensus_586#1
TTTTTAAATAACTGCTCAGGAAGTCTTCTGATTTTCTAAATTACACCAGAAACATGATCT
GGAACACCAACGAAACACAAAGTCAGAGTTCGGGGCTTGGTGACCTGGCTTTGTACGGCG
GTCAAAGACGTTCCCTCAGAATTTACAGGCGCAGCTTGGCGAGTGGGAGGAGCCAAGTGA
GCAGCAGCATCATCAGCAGCTCCAACAGTTCCAAGAGCATTTTTGACAGCAGCGATGCTG
ATCCCTTAAATTTGAAGGCTTTATATTTTACCTTTGCGTGCATCGTGATTTTAGGTAAGT
CATCTGTCATAGACATATATGAGATGTTTGATCTGCTGTTCTGAATGAATCTTTTCCCCC
TCCATCAGGCCTTCCGATCATCTTTTTCGGTTTGAGGAGCATTGTTTCTCCTTTGAGACC
AAAGGGTCCTGGAGCGATCTTCTCTCCAGTCTTTAATAAGGTATTTACATGATCCAAAGT
AATAGAAACAGCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_586#0      TTCTGTTTTTAAATAACTGCTCAGGAAGTCTTCTGATTTTCTAAATTACACCAGAAACAT 60
consensus_586#1      -----TTTTTAAATAACTGCTCAGGAAGTCTTCTGATTTTCTAAATTACACCAGAAACAT 55
                          *******************************************************

consensus_586#0      GATCTGGAACACCAACGAAACACAAAGTCAGAGTTCGGGGCTTGGTGACCTGGCTTTGTA 120
consensus_586#1      GATCTGGAACACCAACGAAACACAAAGTCAGAGTTCGGGGCTTGGTGACCTGGCTTTGTA 115
                     ************************************************************

consensus_586#0      CGGCGGTCAAAGACGTTCCCTCAGAATTTACAGGCGCAGCTTGGCGAGTGGGAGGAGCCA 180
consensus_586#1      CGGCGGTCAAAGACGTTCCCTCAGAATTTACAGGCGCAGCTTGGCGAGTGGGAGGAGCCA 175
                     ************************************************************

consensus_586#0      AGTGAGCAGCAGCATCATCAGCAGCTCCAACAGTTCCAAGAGCATTTTTGACAGCAGCGA 240
consensus_586#1      AGTGAGCAGCAGCATCATCAGCAGCTCCAACAGTTCCAAGAGCATTTTTGACAGCAGCGA 235
                     ************************************************************

consensus_586#0      TGCTGATCCCTTAAATTTGAAGGCTTTATATTTTACCTTTGCGTGCATCGTGATTTTAGG 300
consensus_586#1      TGCTGATCCCTTAAATTTGAAGGCTTTATATTTTACCTTTGCGTGCATCGTGATTTTAGG 295
                     ************************************************************

consensus_586#0      CCTTCCGATCATCTTTTTCGGTTTGAGGAGCATTGTTTCTCCTTTGAGACCAAAGGGTCC 360
consensus_586#1      TA----AGTCATCTGTCATAGACATATATGAGATGTTTGATCTGCT----------GTTC 341
                             ****** *    *    *   *   *****   **             ** *

consensus_586#0      TGGAGCGATCTTCTCTCCAGTCTTTAATAAGAGACCCATTGATATTTGT-GATGAGATGA 419
consensus_586#1      TGAATGAATCTTTTCCCC---CTCCATCAGGCCTTCCGATCATCTTTTTCGGTTTGAGGA 398
                     ** *   ***** ** **   **  *  * *    **  * ** *** * * *  ** **

consensus_586#0      TGAT-GTACATAGATAAGCTCCAAGTTGAATTAGA-TGATGTGAAGGAAAAACTGAAACT 477
consensus_586#1      GCATTGTTTCTCCTTTGAGACCAAAGGGTCCTGGAGCGATCTTCTCTCCAGTCTTTAA-T 457
                       ** **   *   *     ****   *   * **  *** *       *  **  ** *

consensus_586#0      GACCTATCAGGACCCAGATTCAAATTTCTGGAC-CAACTTTGCTCTGGAGTCTCATGGAG 536
consensus_586#1      AAGGTATTTACAT---GATCCAAAGTAATAGAAACAGCTG-------------------- 494
                      *  ***    *    *** **** *  * **  ** **                     

consensus_586#0      CCAAAGTGGACAAAAAACGATCCTCCAGCACCTATGGGAGGATCG 581
consensus_586#1      ---------------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)