These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_586#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence [TTCTGTTTTTAAATAACTGCTCAGGAAGTCTTCTGATTTTCTAAATTACACCAGAAACATGATCTGGAACACCAACGAAACACAAAGTCAGAGTTCGGGGCTTGGTGACCTGGCTTTGTACGGCGGTCAAAGACGTTCCCTCAGAATTTACAGGCGCAGCTTGGCGAGTGGGAGGAGCCAAGTGAGCAGCAGCATCATCAGCAGCTCCAACAGTTCCAAGAGCATTTTTGACAGCAGCGATGCTGATCCCTTAAATTTGAAGGCTTTATATTTTACCTTTGCGTGCATCGTGATTTTAGGCCTTCCGATCATCTTTTTCGGTTTGAGGAGCATTGTTTCTCCTTTGAGACCAAAGGGTCCTGGAGCGATCTTCTCTCCAGTCTTTAATAAGAGACCCATTGATATTTGTGATGAGATGATGATGTACATAGATAAGCTCCAAGTTGAATTAGATGATGTGAAGGAAAAACTGAAACTGACCTATCAGGACCCAGATTCAAATTTCTGGACCAACTTTGCTCTGGAGTCTCATGGAGCCAAAGTGGACAAAAAACGATCCTCCAGCACCTATGGGAGGATCG] [+] EMBL CA590259 [TTCTGTTTTTAAATAACTGCTCAGGAAGTCTTCTGATTTTCTAAATTACACCAGAAACATGATCTGGAACACCAACGAAACACAAAGTCAGAGTTCGGGGCTTGGTGACCTGGCTTTGTACGGCGGTCAAAGACGTTCCCTCAGAATTTACAGGCGCAGCTTGGCGAGTGGGAGGAGCCAAGTGAGCAGCAGCATCATCAGCAGCTCCAACAGTTCCAAGAGCATTTTTGACAGCAGCGATGCTGATCCCTTAAATTTGAAGGCTTTATATTTTACCTTTGCGTGCATCGTGATTTTAGGCCTTCCGATCATCTTTTTCGGTTTGAGGAGCATTGTTTCTCCTTTGAGACCAAAGGGTCCTGGAGCGATCTTCTCTCCAGTCTTTAATAAGAGACCCATTGATATTTGTGATGAGATGATGATGTACATAGATAAGCTCCAAGTTGAATTAGATGATGTGAAGGAAAAACTGAAACTGACCTATCAGGACCCAGATTCAAATTTCTGGACCAACTTTGCTCTGGAGTCTCATGGAGCCAAAGTGGACAAAAAACGATCCTCCAGCACCTATGGGAGGATCG] consensusID : consensus_586#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence [TTTTTAAATAACTGCTCAGGAAGTCTTCTGATTTTCTAAATTACACCAGAAACATGATCTGGAACACCAACGAAACACAAAGTCAGAGTTCGGGGCTTGGTGACCTGGCTTTGTACGGCGGTCAAAGACGTTCCCTCAGAATTTACAGGCGCAGCTTGGCGAGTGGGAGGAGCCAAGTGAGCAGCAGCATCATCAGCAGCTCCAACAGTTCCAAGAGCATTTTTGACAGCAGCGATGCTGATCCCTTAAATTTGAAGGCTTTATATTTTACCTTTGCGTGCATCGTGATTTTAGGTAAGTCATCTGTCATAGACATATATGAGATGTTTGATCTGCTGTTCTGAATGAATCTTTTCCCCCTCCATCAGGCCTTCCGATCATCTTTTTCGGTTTGAGGAGCATTGTTTCTCCTTTGAGACCAAAGGGTCCTGGAGCGATCTTCTCTCCAGTCTTTAATAAGGTATTTACATGATCCAAAGTAATAGAAACAGCTG] [+] EMBL CA333321 [TTTTTAAATAACTGCTCAGGAAGTCTTCTGATTTTCTAAATTACACCAGAAACATGATCTGGAACACCAACGAAACACAAAGTCAGAGTTCGGGGCTTGGTGACCTGGCTTTGTACGGCGGTCAAAGACGTTCCCTCAGAATTTACAGGCGCAGCTTGGCGAGTGGGAGGAGCCAAGTGAGCAGCAGCATCATCAGCAGCTCCAACAGTTCCAAGAGCATTTTTGACAGCAGCGATGCTGATCCCTTAAATTTGAAGGCTTTATATTTTACCTTTGCGTGCATCGTGATTTTAGGTAAGTCATCTGTCATAGACATATATGAGATGTTTGATCTGCTGTTCTGAATGAATCTTTTCCCCCTCCATCAGGCCTTCCGATCATCTTTTTCGGTTTGAGGAGCATTGTTTCTCCTTTGAGACCAAAGGGTCCTGGAGCGATCTTCTCTCCAGTCTTTAATAAGGTATTTACATGATCCAAAGTAATAGAAACAGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_586#0 TTCTGTTTTTAAATAACTGCTCAGGAAGTCTTCTGATTTTCTAAATTACACCAGAAACAT 60 consensus_586#1 -----TTTTTAAATAACTGCTCAGGAAGTCTTCTGATTTTCTAAATTACACCAGAAACAT 55 ******************************************************* consensus_586#0 GATCTGGAACACCAACGAAACACAAAGTCAGAGTTCGGGGCTTGGTGACCTGGCTTTGTA 120 consensus_586#1 GATCTGGAACACCAACGAAACACAAAGTCAGAGTTCGGGGCTTGGTGACCTGGCTTTGTA 115 ************************************************************ consensus_586#0 CGGCGGTCAAAGACGTTCCCTCAGAATTTACAGGCGCAGCTTGGCGAGTGGGAGGAGCCA 180 consensus_586#1 CGGCGGTCAAAGACGTTCCCTCAGAATTTACAGGCGCAGCTTGGCGAGTGGGAGGAGCCA 175 ************************************************************ consensus_586#0 AGTGAGCAGCAGCATCATCAGCAGCTCCAACAGTTCCAAGAGCATTTTTGACAGCAGCGA 240 consensus_586#1 AGTGAGCAGCAGCATCATCAGCAGCTCCAACAGTTCCAAGAGCATTTTTGACAGCAGCGA 235 ************************************************************ consensus_586#0 TGCTGATCCCTTAAATTTGAAGGCTTTATATTTTACCTTTGCGTGCATCGTGATTTTAGG 300 consensus_586#1 TGCTGATCCCTTAAATTTGAAGGCTTTATATTTTACCTTTGCGTGCATCGTGATTTTAGG 295 ************************************************************ consensus_586#0 CCTTCCGATCATCTTTTTCGGTTTGAGGAGCATTGTTTCTCCTTTGAGACCAAAGGGTCC 360 consensus_586#1 TA----AGTCATCTGTCATAGACATATATGAGATGTTTGATCTGCT----------GTTC 341 ****** * * * * ***** ** ** * consensus_586#0 TGGAGCGATCTTCTCTCCAGTCTTTAATAAGAGACCCATTGATATTTGT-GATGAGATGA 419 consensus_586#1 TGAATGAATCTTTTCCCC---CTCCATCAGGCCTTCCGATCATCTTTTTCGGTTTGAGGA 398 ** * ***** ** ** ** * * * ** * ** *** * * * ** ** consensus_586#0 TGAT-GTACATAGATAAGCTCCAAGTTGAATTAGA-TGATGTGAAGGAAAAACTGAAACT 477 consensus_586#1 GCATTGTTTCTCCTTTGAGACCAAAGGGTCCTGGAGCGATCTTCTCTCCAGTCTTTAA-T 457 ** ** * * **** * * ** *** * * ** ** * consensus_586#0 GACCTATCAGGACCCAGATTCAAATTTCTGGAC-CAACTTTGCTCTGGAGTCTCATGGAG 536 consensus_586#1 AAGGTATTTACAT---GATCCAAAGTAATAGAAACAGCTG-------------------- 494 * *** * *** **** * * ** ** ** consensus_586#0 CCAAAGTGGACAAAAAACGATCCTCCAGCACCTATGGGAGGATCG 581 consensus_586#1 --------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |