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Takifugu rubripes
cluster # 615 cluster # 615       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_615#0 length = 652 sequences # 1  
consensus_615#1 length = 582 sequences # 1  

consensusID : consensus_615#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 652
fasta sequence
                              [ACCCTTTAAGGCGGCGGTAACAACGGCAGTAGTAGCCATAGCGGCATATTAAATCAGCGTGTTCTTTGAACTTAACAATGTCAACAAGTGACTTTTATTTGAGATATTATGTTGGTCATAAGGGGAAATTTGGACACGAGTTCCTGGAATTTGAATTTAGACCAGACGGGAAACTGAGGTATGCCAACAACAGCAACTACAAGAATGACGTGATGATCCGAAAGGAGGCATATGTCCACAAAAGTGTGATGGAAGAGCTGAAGAGGATCATCGACGACAGTGAGATCACCAAGGAAGATGATGCGCTGTGGCCCCCTCCCGACAGGGTCGGCAGACAGGTTGTCCCTATAAATACATGATATACAGTGCAAAGAAAAATAGTGTTTTGCATGGTTTCCATAAGAGATCTGTTCTTCTTCAAGACCAGGAACAGTTTGGTCCTGGATAAAACTGTAATTAATAATGACAGTAGAGAAGGTTTGCCTTGAGGCCTCTCCAGCAAACATTAAGCTCCCCAAAAAGGCCACCAACCAGCTCAACAAGGCATGTGAACCATGATCTTCATTTTGGGACTGTTCATGCTCATTTCTTTTTTTTCTGATGTTTGTTTTAAACATTTCCCAGTAAAAAGAAATCTTTATTGTATTGCTGG]

[+] EMBL CA588476             [ACCCTTTAAGGCGGCGGTAACAACGGCAGTAGTAGCCATAGCGGCATATTAAATCAGCGTGTTCTTTGAACTTAACAATGTCAACAAGTGACTTTTATTTGAGATATTATGTTGGTCATAAGGGGAAATTTGGACACGAGTTCCTGGAATTTGAATTTAGACCAGACGGGAAACTGAGGTATGCCAACAACAGCAACTACAAGAATGACGTGATGATCCGAAAGGAGGCATATGTCCACAAAAGTGTGATGGAAGAGCTGAAGAGGATCATCGACGACAGTGAGATCACCAAGGAAGATGATGCGCTGTGGCCCCCTCCCGACAGGGTCGGCAGACAGGTTGTCCCTATAAATACATGATATACAGTGCAAAGAAAAATAGTGTTTTGCATGGTTTCCATAAGAGATCTGTTCTTCTTCAAGACCAGGAACAGTTTGGTCCTGGATAAAACTGTAATTAATAATGACAGTAGAGAAGGTTTGCCTTGAGGCCTCTCCAGCAAACATTAAGCTCCCCAAAAAGGCCACCAACCAGCTCAACAAGGCATGTGAACCATGATCTTCATTTTGGGACTGTTCATGCTCATTTCTTTTTTTTCTGATGTTTGTTTTAAACATTTCCCAGTAAAAAGAAATCTTTATTGTATTGCTGG]


>consensus_615#0 ACCCTTTAAGGCGGCGGTAACAACGGCAGTAGTAGCCATAGCGGCATATTAAATCAGCGT GTTCTTTGAACTTAACAATGTCAACAAGTGACTTTTATTTGAGATATTATGTTGGTCATA AGGGGAAATTTGGACACGAGTTCCTGGAATTTGAATTTAGACCAGACGGGAAACTGAGGT ATGCCAACAACAGCAACTACAAGAATGACGTGATGATCCGAAAGGAGGCATATGTCCACA AAAGTGTGATGGAAGAGCTGAAGAGGATCATCGACGACAGTGAGATCACCAAGGAAGATG ATGCGCTGTGGCCCCCTCCCGACAGGGTCGGCAGACAGGTTGTCCCTATAAATACATGAT ATACAGTGCAAAGAAAAATAGTGTTTTGCATGGTTTCCATAAGAGATCTGTTCTTCTTCA AGACCAGGAACAGTTTGGTCCTGGATAAAACTGTAATTAATAATGACAGTAGAGAAGGTT TGCCTTGAGGCCTCTCCAGCAAACATTAAGCTCCCCAAAAAGGCCACCAACCAGCTCAAC AAGGCATGTGAACCATGATCTTCATTTTGGGACTGTTCATGCTCATTTCTTTTTTTTCTG ATGTTTGTTTTAAACATTTCCCAGTAAAAAGAAATCTTTATTGTATTGCTGG



consensusID : consensus_615#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 582
fasta sequence
                              [GTAGCCATAGCGGCAATATTAAATCAGCGTGTTCTTTGAACTTAACAATGTCAACAAGTGACTTTTATTTGAGATATTATGTTGGTCATAAGGGGAAATTTGGACACGAGTTCCTGGAATTTGAATTTAGACCTGACGGGAAACTGAGGTATGCCAACAACAGCAACTACAAGAATGACGTGATGATCCGAAAGGAGGCATATGTCCACAAAAGTGTGATGGAAGAGCTGAAGAGGATCATCGACGACAGTGAGATCACCAAGGAAGATGATGCGCTGTGGCCCCCTCCCGACAGGGTCGGCAGACAGGAGCTGGAGATCGTCATTGGAGATGAACACATCTCGTTCACAACTTCGAAAATCGGTTCCCTCATTGATGTCAACCAGTCCAAGGACCCTGAAGGCCTGCGTGTCTTCTACTACCTGGTGCAGGATCTGAAATGTCTCGTCTTCAGTCTCATTAGTCTGCACTTCAAGATCAAGCCAATCTAAGGGGTCCTCTTCTCTACTGTAGCTGATGTCTTTGGAGTTTTGCATTTTTATGGACATTTGCTTTTGTTGAATTTATTTTATTTGGAATAAA]

[+] EMBL CA340952             [GTAGCCATAGCGGCAATATTAAATCAGCGTGTTCTTTGAACTTAACAATGTCAACAAGTGACTTTTATTTGAGATATTATGTTGGTCATAAGGGGAAATTTGGACACGAGTTCCTGGAATTTGAATTTAGACCTGACGGGAAACTGAGGTATGCCAACAACAGCAACTACAAGAATGACGTGATGATCCGAAAGGAGGCATATGTCCACAAAAGTGTGATGGAAGAGCTGAAGAGGATCATCGACGACAGTGAGATCACCAAGGAAGATGATGCGCTGTGGCCCCCTCCCGACAGGGTCGGCAGACAGGAGCTGGAGATCGTCATTGGAGATGAACACATCTCGTTCACAACTTCGAAAATCGGTTCCCTCATTGATGTCAACCAGTCCAAGGACCCTGAAGGCCTGCGTGTCTTCTACTACCTGGTGCAGGATCTGAAATGTCTCGTCTTCAGTCTCATTAGTCTGCACTTCAAGATCAAGCCAATCTAAGGGGTCCTCTTCTCTACTGTAGCTGATGTCTTTGGAGTTTTGCATTTTTATGGACATTTGCTTTTGTTGAATTTATTTTATTTGGAATAAA]


>consensus_615#1 GTAGCCATAGCGGCAATATTAAATCAGCGTGTTCTTTGAACTTAACAATGTCAACAAGTG ACTTTTATTTGAGATATTATGTTGGTCATAAGGGGAAATTTGGACACGAGTTCCTGGAAT TTGAATTTAGACCTGACGGGAAACTGAGGTATGCCAACAACAGCAACTACAAGAATGACG TGATGATCCGAAAGGAGGCATATGTCCACAAAAGTGTGATGGAAGAGCTGAAGAGGATCA TCGACGACAGTGAGATCACCAAGGAAGATGATGCGCTGTGGCCCCCTCCCGACAGGGTCG GCAGACAGGAGCTGGAGATCGTCATTGGAGATGAACACATCTCGTTCACAACTTCGAAAA TCGGTTCCCTCATTGATGTCAACCAGTCCAAGGACCCTGAAGGCCTGCGTGTCTTCTACT ACCTGGTGCAGGATCTGAAATGTCTCGTCTTCAGTCTCATTAGTCTGCACTTCAAGATCA AGCCAATCTAAGGGGTCCTCTTCTCTACTGTAGCTGATGTCTTTGGAGTTTTGCATTTTT ATGGACATTTGCTTTTGTTGAATTTATTTTATTTGGAATAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_615#0      ACCCTTTAAGGCGGCGGTAACAACGGCAGTAGTAGCCATAGCGGCA-TATTAAATCAGCG 59
consensus_615#1      -------------------------------GTAGCCATAGCGGCAATATTAAATCAGCG 29
                                                    *************** *************

consensus_615#0      TGTTCTTTGAACTTAACAATGTCAACAAGTGACTTTTATTTGAGATATTATGTTGGTCAT 119
consensus_615#1      TGTTCTTTGAACTTAACAATGTCAACAAGTGACTTTTATTTGAGATATTATGTTGGTCAT 89
                     ************************************************************

consensus_615#0      AAGGGGAAATTTGGACACGAGTTCCTGGAATTTGAATTTAGACCAGACGGGAAACTGAGG 179
consensus_615#1      AAGGGGAAATTTGGACACGAGTTCCTGGAATTTGAATTTAGACCTGACGGGAAACTGAGG 149
                     ******************************************** ***************

consensus_615#0      TATGCCAACAACAGCAACTACAAGAATGACGTGATGATCCGAAAGGAGGCATATGTCCAC 239
consensus_615#1      TATGCCAACAACAGCAACTACAAGAATGACGTGATGATCCGAAAGGAGGCATATGTCCAC 209
                     ************************************************************

consensus_615#0      AAAAGTGTGATGGAAGAGCTGAAGAGGATCATCGACGACAGTGAGATCACCAAGGAAGAT 299
consensus_615#1      AAAAGTGTGATGGAAGAGCTGAAGAGGATCATCGACGACAGTGAGATCACCAAGGAAGAT 269
                     ************************************************************

consensus_615#0      GATGCGCTGTGGCCCCCTCCCGACAGGGTCGGCAGACAGGTTGTCCCTATAAATACATGA 359
consensus_615#1      GATGCGCTGTGGCCCCCTCCCGACAGGGTCGGCAGACAGG-----------AGCTGGAGA 318
                     ****************************************           *      **

consensus_615#0      TATACAGTGCAAAGAAAAATAGTGTTTTGCATGGTTTCCATAAGAGATCTGTTCTTCTTC 419
consensus_615#1      TCGTCATTGGAGATGAACACA-TCTCGTTCACAACTTCGAAAATCGGTTC--CCTCATTG 375
                     *   ** ** * *  ** * * * *  * **    *** * **  * *     **  ** 

consensus_615#0      AAGACCAGGAACAGTTTGGTCCTGGATAAAACTGTAATTAATAATGACAGTAGAGAAGGT 479
consensus_615#1      ATGTCAACCAGTCCAAGGACCCTGAAGGCCTGCGTGTCTTCTACTACCTGGTGC-AGGAT 434
                     * * * *  *       *  **** *       **   *  ** *  * *  *  * * *

consensus_615#0      TTGCCTTGAGGCCTCTCCAGCAAACATTAAGCTCCCCAAAAAGGCCACCAACCAGCTCAA 539
consensus_615#1      CTGAAATGTCTCGTCTTCAGTCT-CATTAGTCTGCACTTCAAGATCA--AGCCAATCTAA 491
                      **   **   * *** ***    *****  ** * *   ***  **  * ***    **

consensus_615#0      CAAGGCATGTGAACCATGATCTTCATTTTGGGACTGTTCATGCTCATTTCTTTTTTTTCT 599
consensus_615#1      GGGGTCCTCTTCTCTA----CTGTAGCTGATGTCTTTGGAGTTTTGCATTTTTATGGACA 547
                        * * * *   * *    **  *  *   * ** *  *   *    * *** *   * 

consensus_615#0      GATGTTTGTTTTAAACATTTCCCAGTAAAAAGAAATCTTTATTGTATTGCTGG 652
consensus_615#1      TTTGCTTTTGTTGAATTTATTTTATTTGGAATAAA------------------ 582
                       ** ** * ** **  * *   * *   ** ***                  




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)