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Takifugu rubripes
cluster # 622 cluster # 622       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_622#0 length = 793 sequences # 1  
 consensus_622#1 length = 94 sequences # 1  
consensusID : consensus_622#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 793
fasta sequence 
                              [GTATTTAAGGGAAAAGAAGAACCTTCAGACCAGATCCTATAGACCAGCTGTTACAGACCAGATGGTTACAGACCAGATGGTTTCAGACCAGATGGTTACAGACCAGATGTTACAGACCAGATGTTACAGACCAGATGGTTTCAGACCAGATGTTACAGACCAGATGGTTACAGACCAGCTGTTACAGACCAGATGGTTACAGACCAGATGGTTACAGACCAGATGGTTACAGACCAGATGGTTTCAGACCAGATGTTACAGACCAGATGGTTTCAGACCAGATGTTACAGACCAGATGTTACAGACCAGATGGTTACAGACCAGATGGTTACAGACCAGATGGTTTCAGACCAGATGTTACAGACCAGATGTTACAGACCAGATGGTTTCAGACCTGCTTTCATGATGGACTTTACTCAGCATATATCATAAACCCACTGAAGATGATTTTTTTTTCTTGAGTGTCTTTTGTCTCAGCATCTTTTTGCTGGTCCTTGAAGGACTCCAGCCACACCTTCTGTCCAGCTCCGAGCTGTAGAACCACCCCTCCAGACAGAACCTGTTCGGTGTTCCTGTTGTAGTCACAGAAGCCCAGCTTGTCGGTTAGGGAGTCGCTGCTTATACGCAGACACATGCTGACCTTGGCCATGGACTGAAAGGTGAAGTAATAGACTCCAGGTATTTTGCACGTGAAAAACCCGGTGCCTGCATTAAAGTGCCCTGGTTTGTTGACCAAAGTGACATCATAGGGCACTACCTTGCGAAAAACTGGATAGCGTTGATCAGTCCTCAT]

[+] EMBL CA588785             [GTATTTAAGGGAAAAGAAGAACCTTCAGACCAGATCCTATAGACCAGCTGTTACAGACCAGATGGTTACAGACCAGATGGTTTCAGACCAGATGGTTACAGACCAGATGTTACAGACCAGATGTTACAGACCAGATGGTTTCAGACCAGATGTTACAGACCAGATGGTTACAGACCAGCTGTTACAGACCAGATGGTTACAGACCAGATGGTTACAGACCAGATGGTTACAGACCAGATGGTTTCAGACCAGATGTTACAGACCAGATGGTTTCAGACCAGATGTTACAGACCAGATGTTACAGACCAGATGGTTACAGACCAGATGGTTACAGACCAGATGGTTTCAGACCAGATGTTACAGACCAGATGTTACAGACCAGATGGTTTCAGACCTGCTTTCATGATGGACTTTACTCAGCATATATCATAAACCCACTGAAGATGATTTTTTTTTCTTGAGTGTCTTTTGTCTCAGCATCTTTTTGCTGGTCCTTGAAGGACTCCAGCCACACCTTCTGTCCAGCTCCGAGCTGTAGAACCACCCCTCCAGACAGAACCTGTTCGGTGTTCCTGTTGTAGTCACAGAAGCCCAGCTTGTCGGTTAGGGAGTCGCTGCTTATACGCAGACACATGCTGACCTTGGCCATGGACTGAAAGGTGAAGTAATAGACTCCAGGTATTTTGCACGTGAAAAACCCGGTGCCTGCATTAAAGTGCCCTGGTTTGTTGACCAAAGTGACATCATAGGGCACTACCTTGCGAAAAACTGGATAGCGTTGATCAGTCCTCAT]




>consensus_622#0
GTATTTAAGGGAAAAGAAGAACCTTCAGACCAGATCCTATAGACCAGCTGTTACAGACCA
GATGGTTACAGACCAGATGGTTTCAGACCAGATGGTTACAGACCAGATGTTACAGACCAG
ATGTTACAGACCAGATGGTTTCAGACCAGATGTTACAGACCAGATGGTTACAGACCAGCT
GTTACAGACCAGATGGTTACAGACCAGATGGTTACAGACCAGATGGTTACAGACCAGATG
GTTTCAGACCAGATGTTACAGACCAGATGGTTTCAGACCAGATGTTACAGACCAGATGTT
ACAGACCAGATGGTTACAGACCAGATGGTTACAGACCAGATGGTTTCAGACCAGATGTTA
CAGACCAGATGTTACAGACCAGATGGTTTCAGACCTGCTTTCATGATGGACTTTACTCAG
CATATATCATAAACCCACTGAAGATGATTTTTTTTTCTTGAGTGTCTTTTGTCTCAGCAT
CTTTTTGCTGGTCCTTGAAGGACTCCAGCCACACCTTCTGTCCAGCTCCGAGCTGTAGAA
CCACCCCTCCAGACAGAACCTGTTCGGTGTTCCTGTTGTAGTCACAGAAGCCCAGCTTGT
CGGTTAGGGAGTCGCTGCTTATACGCAGACACATGCTGACCTTGGCCATGGACTGAAAGG
TGAAGTAATAGACTCCAGGTATTTTGCACGTGAAAAACCCGGTGCCTGCATTAAAGTGCC
CTGGTTTGTTGACCAAAGTGACATCATAGGGCACTACCTTGCGAAAAACTGGATAGCGTT
GATCAGTCCTCAT

consensusID : consensus_622#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 94
fasta sequence 
                              [CTGGCCTGTAACATCTGGTCTGAAGGTTCTTCTTTTCCCTTAAATACTTTAATGCAGATCTGAATTTGAGAATAAAACCATAAAGACTTGAAAA]

[+] EMBL CA341014             [CTGGCCTGTAACATCTGGTCTGAAGGTTCTTCTTTTCCCTTAAATACTTTAATGCAGATCTGAATTTGAGAATAAAACCATAAAGACTTGAAAA]




>consensus_622#1
CTGGCCTGTAACATCTGGTCTGAAGGTTCTTCTTTTCCCTTAAATACTTTAATGCAGATC
TGAATTTGAGAATAAAACCATAAAGACTTGAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_622#0      GTATTTAAGGGAAAAGAAGAACCTTCAGACCAGATCCTATAGACCAGCTGTTACAGACCA 60
consensus_622#1      ------------------------------------------------------------
                                                                                 

consensus_622#0      GATGGTTACAGACCAGATGGTTTCAGACCAGATGGTTACAGACCAGATGTTACAGACCAG 120
consensus_622#1      ------------------------------------------------------------
                                                                                 

consensus_622#0      ATGTTACAGACCAGATGGTTTCAGACCAGATGTTACAGACCAGATGGTTACAGACCAGCT 180
consensus_622#1      ------------------------------------------------------------
                                                                                 

consensus_622#0      GTTACAGACCAGATGGTTACAGACCAGATGGTTACAGACCAGATGGTTACAGACCAGATG 240
consensus_622#1      ------------------------------------------------------------
                                                                                 

consensus_622#0      GTTTCAGACCAGATGTTACAGACCAGATGGTTTCAGACCAGATGTTACAGACCAGATGTT 300
consensus_622#1      ------------------------------------------------------------
                                                                                 

consensus_622#0      ACAGACCAGATGGTTACAGACCAGATGGTTACAGACCAGATGGTTTCAGACCAGATGTTA 360
consensus_622#1      ------------------------------------------------------------
                                                                                 

consensus_622#0      CAGACCAGATGTTACAGACCAGATGGTTTCAGACCTGCTTTCATGATGGACTTTACTCAG 420
consensus_622#1      --------------------------------------------------------CTGG 4
                                                                                *

consensus_622#0      CATATATCATAAACCCACTGAAGATGATTTTTTTTTCTTGAGTGTCTTTTGTCTCAGCAT 480
consensus_622#1      CCTGTAACATCTGGTC--TGAAGGTTCTTCTTTTCCCTTAAATA-CTTTAATGCAGATCT 61
                     * * ** ***     *  ***** *  ** ****  *** * *  ****  *       *

consensus_622#0      CTTTTTGCTGGTC---CTTGAAGGACTCCAGCCACACCTTCTGTCCAGCTCCGAGCTGTA 537
consensus_622#1      GAATTTGAGAATAAAACCATAAAGACTTGAAAA--------------------------- 94
                        ****    *    *   ** ****  *                              

consensus_622#0      GAACCACCCCTCCAGACAGAACCTGTTCGGTGTTCCTGTTGTAGTCACAGAAGCCCAGCT 597
consensus_622#1      ------------------------------------------------------------
                                                                                 

consensus_622#0      TGTCGGTTAGGGAGTCGCTGCTTATACGCAGACACATGCTGACCTTGGCCATGGACTGAA 657
consensus_622#1      ------------------------------------------------------------
                                                                                 

consensus_622#0      AGGTGAAGTAATAGACTCCAGGTATTTTGCACGTGAAAAACCCGGTGCCTGCATTAAAGT 717
consensus_622#1      ------------------------------------------------------------
                                                                                 

consensus_622#0      GCCCTGGTTTGTTGACCAAAGTGACATCATAGGGCACTACCTTGCGAAAAACTGGATAGC 777
consensus_622#1      ------------------------------------------------------------
                                                                                 

consensus_622#0      GTTGATCAGTCCTCAT 793
consensus_622#1      ----------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)