These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_652#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence [GGTGTATCTCCCCTTTGTCTGCTGGCTCACATGCTGGTGAGTCATCAGATCTCCAAAACGGTTTCAGAAGAGAAGACAAAACAGTGCAATTGACAAAGAAAACTACCTTGGATTAAAGCAAATGACCCCCCCCCCCCCATGCCAGTTTTCCAGAAAACCTTTATGTCTCTATTTGCTTGACAGTACAAAACCAATTCCTATGGAATGCATCCCTTTTATATGGGTCTGGAGAAAACAGCCGATGCTCACGGCGTCCTGCTGCTGAACAGTAATGCCATGGATGTGACTTTGCAGCCAACTCCAGCGTTAACCTACAGAACAGTCGGAGGCATCTTGGATTTCTACATGGTCCTGGGACCTACGCCAGAAATGGTGGTGCAGGAGTACACACAACTGATAGGACGACCCGTACTACCTGCCTATTGGACTCTGGGGTTCCAGCTCTGTCGCTATGGTTATGCCAATGACTCAGAAATAGAAGATCTGTACAACAGTATGAGGGCTGCTGGGATCCCCTATGATGTGCAGTATGCTGACATTGACTACATGGACCGCCAACTGAACTTTGTCCTTGATTCGGAATTCTCCCAGTTGCCTGCACTGGTGGACCGCATTCAGGATGAGGGCGGCAGATTTATTATTATTTCTGATCCAGCGATCTCCGGCAATGAG] [+] EMBL CA847029 [GGTGTATCTCCCCTTTGTCTGCTGGCTCACATGCTGGTGAGTCATCAGATCTCCAAAACGGTTTCAGAAGAGAAGACAAAACAGTGCAATTGACAAAGAAAACTACCTTGGATTAAAGCAAATGACCCCCCCCCCCCCATGCCAGTTTTCCAGAAAACCTTTATGTCTCTATTTGCTTGACAGTACAAAACCAATTCCTATGGAATGCATCCCTTTTATATGGGTCTGGAGAAAACAGCCGATGCTCACGGCGTCCTGCTGCTGAACAGTAATGCCATGGATGTGACTTTGCAGCCAACTCCAGCGTTAACCTACAGAACAGTCGGAGGCATCTTGGATTTCTACATGGTCCTGGGACCTACGCCAGAAATGGTGGTGCAGGAGTACACACAACTGATAGGACGACCCGTACTACCTGCCTATTGGACTCTGGGGTTCCAGCTCTGTCGCTATGGTTATGCCAATGACTCAGAAATAGAAGATCTGTACAACAGTATGAGGGCTGCTGGGATCCCCTATGATGTGCAGTATGCTGACATTGACTACATGGACCGCCAACTGAACTTTGTCCTTGATTCGGAATTCTCCCAGTTGCCTGCACTGGTGGACCGCATTCAGGATGAGGGCGGCAGATTTATTATTATTTCTGATCCAGCGATCTCCGGCAATGAG] consensusID : consensus_652#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence [GCAGTACATCCCACCTACAAACACGACCTCAACTATCACACCTGCCTTAATGTTCACCAAGGACCAACCACCGGGTTACAAAACCAATTCCTATGGAATGCATCCCTTTTATATGGGTCTGGAGAAAACAGCCGATGCTCACGGCGTCCTGCTGCTGAACAGTAATGCCATGGATGTGACTTTGCAGCCAACTCCAGCGTTAACCTACAGAACAGTCGGAGGCATCTTGGATTTCTACATGGTCCTGGGACCTACGCCAGAAATGGTGGTGCAGGAGTACACACAACTGATAGGACGACCCGTACTACCTGCCTATTGGACTCTGGGGTTCCAGCTCTGTCGCTATGGTTATGCCAATGACTCAGAAATAGAAGATCTGTACAACAGTATGAGGGCTGCTGGTATCCCCTATGATGTGCAGTATGCTGACATTGACTACATGGACCGCCAACTGAACTTCGTCCTTGATTCGGAATTCTCCAAGTTGCCTGCACTGGTGGAGCGCATTCAGGATGAGGGCGGCAGATTTATTATTATTCTGGATCCAGCGATCTCCGGCAATGAGACGGTCCCTTACCCCGCCTTTGACAGGGGAGTGGCCGATGACGTTTTCATCAAGTGGCCCAAAAACCTCAGTGATGA] [+] EMBL CA588234 [GCAGTACATCCCACCTACAAACACGACCTCAACTATCACACCTGCCTTAATGTTCACCAAGGACCAACCACCGGGTTACAAAACCAATTCCTATGGAATGCATCCCTTTTATATGGGTCTGGAGAAAACAGCCGATGCTCACGGCGTCCTGCTGCTGAACAGTAATGCCATGGATGTGACTTTGCAGCCAACTCCAGCGTTAACCTACAGAACAGTCGGAGGCATCTTGGATTTCTACATGGTCCTGGGACCTACGCCAGAAATGGTGGTGCAGGAGTACACACAACTGATAGGACGACCCGTACTACCTGCCTATTGGACTCTGGGGTTCCAGCTCTGTCGCTATGGTTATGCCAATGACTCAGAAATAGAAGATCTGTACAACAGTATGAGGGCTGCTGGTATCCCCTATGATGTGCAGTATGCTGACATTGACTACATGGACCGCCAACTGAACTTCGTCCTTGATTCGGAATTCTCCAAGTTGCCTGCACTGGTGGAGCGCATTCAGGATGAGGGCGGCAGATTTATTATTATTCTGGATCCAGCGATCTCCGGCAATGAGACGGTCCCTTACCCCGCCTTTGACAGGGGAGTGGCCGATGACGTTTTCATCAAGTGGCCCAAAAACCTCAGTGATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_652#0 GGTGTATCTCCCCTTTGTCTGCTGGCTCACATGCTGGTGAGTCATCAGATCTCCAAAACG 60 consensus_652#1 ------------------------------------------------------------ consensus_652#0 GTTTCAGAAGAGAAGACAAAACAGTGCAATTGACAAAGAAAACTACCTTGGATTAAAGCA 120 consensus_652#1 --------------------------------------------GCAGTACATCCCACCT 16 * * ** * * consensus_652#0 AATGACCCCCCCCCCCCCATGCCAGTTTTCCAGAAAACCTTTATGTCTCTATTTGCTTGA 180 consensus_652#1 ACAAACACGACCTCAACTATCACACCTGCCTTAATGTTCACCAAGGA-CCAACCACCGGG 75 * ** * ** * * ** ** * * * * * * * * * * consensus_652#0 CAGTACAAAACCAATTCCTATGGAATGCATCCCTTTTATATGGGTCTGGAGAAAACAGCC 240 consensus_652#1 T--TACAAAACCAATTCCTATGGAATGCATCCCTTTTATATGGGTCTGGAGAAAACAGCC 133 ********************************************************* consensus_652#0 GATGCTCACGGCGTCCTGCTGCTGAACAGTAATGCCATGGATGTGACTTTGCAGCCAACT 300 consensus_652#1 GATGCTCACGGCGTCCTGCTGCTGAACAGTAATGCCATGGATGTGACTTTGCAGCCAACT 193 ************************************************************ consensus_652#0 CCAGCGTTAACCTACAGAACAGTCGGAGGCATCTTGGATTTCTACATGGTCCTGGGACCT 360 consensus_652#1 CCAGCGTTAACCTACAGAACAGTCGGAGGCATCTTGGATTTCTACATGGTCCTGGGACCT 253 ************************************************************ consensus_652#0 ACGCCAGAAATGGTGGTGCAGGAGTACACACAACTGATAGGACGACCCGTACTACCTGCC 420 consensus_652#1 ACGCCAGAAATGGTGGTGCAGGAGTACACACAACTGATAGGACGACCCGTACTACCTGCC 313 ************************************************************ consensus_652#0 TATTGGACTCTGGGGTTCCAGCTCTGTCGCTATGGTTATGCCAATGACTCAGAAATAGAA 480 consensus_652#1 TATTGGACTCTGGGGTTCCAGCTCTGTCGCTATGGTTATGCCAATGACTCAGAAATAGAA 373 ************************************************************ consensus_652#0 GATCTGTACAACAGTATGAGGGCTGCTGGGATCCCCTATGATGTGCAGTATGCTGACATT 540 consensus_652#1 GATCTGTACAACAGTATGAGGGCTGCTGGTATCCCCTATGATGTGCAGTATGCTGACATT 433 ***************************** ****************************** consensus_652#0 GACTACATGGACCGCCAACTGAACTTTGTCCTTGATTCGGAATTCTCCCAGTTGCCTGCA 600 consensus_652#1 GACTACATGGACCGCCAACTGAACTTCGTCCTTGATTCGGAATTCTCCAAGTTGCCTGCA 493 ************************** ********************* *********** consensus_652#0 CTGGTGGACCGCATTCAGGATGAGGGCGGCAGATTTATTATTATTTCTGATCCAGCGATC 660 consensus_652#1 CTGGTGGAGCGCATTCAGGATGAGGGCGGCAGATTTATTATTATTCTGGATCCAGCGATC 553 ******** ************************************ ************ consensus_652#0 TCCGGCAATGAG------------------------------------------------ 672 consensus_652#1 TCCGGCAATGAGACGGTCCCTTACCCCGCCTTTGACAGGGGAGTGGCCGATGACGTTTTC 613 ************ consensus_652#0 ----------------------------- consensus_652#1 ATCAAGTGGCCCAAAAACCTCAGTGATGA 642 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |