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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_652#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence
[GGTGTATCTCCCCTTTGTCTGCTGGCTCACATGCTGGTGAGTCATCAGATCTCCAAAACGGTTTCAGAAGAGAAGACAAAACAGTGCAATTGACAAAGAAAACTACCTTGGATTAAAGCAAATGACCCCCCCCCCCCCATGCCAGTTTTCCAGAAAACCTTTATGTCTCTATTTGCTTGACAGTACAAAACCAATTCCTATGGAATGCATCCCTTTTATATGGGTCTGGAGAAAACAGCCGATGCTCACGGCGTCCTGCTGCTGAACAGTAATGCCATGGATGTGACTTTGCAGCCAACTCCAGCGTTAACCTACAGAACAGTCGGAGGCATCTTGGATTTCTACATGGTCCTGGGACCTACGCCAGAAATGGTGGTGCAGGAGTACACACAACTGATAGGACGACCCGTACTACCTGCCTATTGGACTCTGGGGTTCCAGCTCTGTCGCTATGGTTATGCCAATGACTCAGAAATAGAAGATCTGTACAACAGTATGAGGGCTGCTGGGATCCCCTATGATGTGCAGTATGCTGACATTGACTACATGGACCGCCAACTGAACTTTGTCCTTGATTCGGAATTCTCCCAGTTGCCTGCACTGGTGGACCGCATTCAGGATGAGGGCGGCAGATTTATTATTATTTCTGATCCAGCGATCTCCGGCAATGAG]
[+] EMBL CA847029 [GGTGTATCTCCCCTTTGTCTGCTGGCTCACATGCTGGTGAGTCATCAGATCTCCAAAACGGTTTCAGAAGAGAAGACAAAACAGTGCAATTGACAAAGAAAACTACCTTGGATTAAAGCAAATGACCCCCCCCCCCCCATGCCAGTTTTCCAGAAAACCTTTATGTCTCTATTTGCTTGACAGTACAAAACCAATTCCTATGGAATGCATCCCTTTTATATGGGTCTGGAGAAAACAGCCGATGCTCACGGCGTCCTGCTGCTGAACAGTAATGCCATGGATGTGACTTTGCAGCCAACTCCAGCGTTAACCTACAGAACAGTCGGAGGCATCTTGGATTTCTACATGGTCCTGGGACCTACGCCAGAAATGGTGGTGCAGGAGTACACACAACTGATAGGACGACCCGTACTACCTGCCTATTGGACTCTGGGGTTCCAGCTCTGTCGCTATGGTTATGCCAATGACTCAGAAATAGAAGATCTGTACAACAGTATGAGGGCTGCTGGGATCCCCTATGATGTGCAGTATGCTGACATTGACTACATGGACCGCCAACTGAACTTTGTCCTTGATTCGGAATTCTCCCAGTTGCCTGCACTGGTGGACCGCATTCAGGATGAGGGCGGCAGATTTATTATTATTTCTGATCCAGCGATCTCCGGCAATGAG]
consensusID : consensus_652#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence
[GCAGTACATCCCACCTACAAACACGACCTCAACTATCACACCTGCCTTAATGTTCACCAAGGACCAACCACCGGGTTACAAAACCAATTCCTATGGAATGCATCCCTTTTATATGGGTCTGGAGAAAACAGCCGATGCTCACGGCGTCCTGCTGCTGAACAGTAATGCCATGGATGTGACTTTGCAGCCAACTCCAGCGTTAACCTACAGAACAGTCGGAGGCATCTTGGATTTCTACATGGTCCTGGGACCTACGCCAGAAATGGTGGTGCAGGAGTACACACAACTGATAGGACGACCCGTACTACCTGCCTATTGGACTCTGGGGTTCCAGCTCTGTCGCTATGGTTATGCCAATGACTCAGAAATAGAAGATCTGTACAACAGTATGAGGGCTGCTGGTATCCCCTATGATGTGCAGTATGCTGACATTGACTACATGGACCGCCAACTGAACTTCGTCCTTGATTCGGAATTCTCCAAGTTGCCTGCACTGGTGGAGCGCATTCAGGATGAGGGCGGCAGATTTATTATTATTCTGGATCCAGCGATCTCCGGCAATGAGACGGTCCCTTACCCCGCCTTTGACAGGGGAGTGGCCGATGACGTTTTCATCAAGTGGCCCAAAAACCTCAGTGATGA]
[+] EMBL CA588234 [GCAGTACATCCCACCTACAAACACGACCTCAACTATCACACCTGCCTTAATGTTCACCAAGGACCAACCACCGGGTTACAAAACCAATTCCTATGGAATGCATCCCTTTTATATGGGTCTGGAGAAAACAGCCGATGCTCACGGCGTCCTGCTGCTGAACAGTAATGCCATGGATGTGACTTTGCAGCCAACTCCAGCGTTAACCTACAGAACAGTCGGAGGCATCTTGGATTTCTACATGGTCCTGGGACCTACGCCAGAAATGGTGGTGCAGGAGTACACACAACTGATAGGACGACCCGTACTACCTGCCTATTGGACTCTGGGGTTCCAGCTCTGTCGCTATGGTTATGCCAATGACTCAGAAATAGAAGATCTGTACAACAGTATGAGGGCTGCTGGTATCCCCTATGATGTGCAGTATGCTGACATTGACTACATGGACCGCCAACTGAACTTCGTCCTTGATTCGGAATTCTCCAAGTTGCCTGCACTGGTGGAGCGCATTCAGGATGAGGGCGGCAGATTTATTATTATTCTGGATCCAGCGATCTCCGGCAATGAGACGGTCCCTTACCCCGCCTTTGACAGGGGAGTGGCCGATGACGTTTTCATCAAGTGGCCCAAAAACCTCAGTGATGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_652#0 GGTGTATCTCCCCTTTGTCTGCTGGCTCACATGCTGGTGAGTCATCAGATCTCCAAAACG 60
consensus_652#1 ------------------------------------------------------------
consensus_652#0 GTTTCAGAAGAGAAGACAAAACAGTGCAATTGACAAAGAAAACTACCTTGGATTAAAGCA 120
consensus_652#1 --------------------------------------------GCAGTACATCCCACCT 16
* * ** * *
consensus_652#0 AATGACCCCCCCCCCCCCATGCCAGTTTTCCAGAAAACCTTTATGTCTCTATTTGCTTGA 180
consensus_652#1 ACAAACACGACCTCAACTATCACACCTGCCTTAATGTTCACCAAGGA-CCAACCACCGGG 75
* ** * ** * * ** ** * * * * * * * * * *
consensus_652#0 CAGTACAAAACCAATTCCTATGGAATGCATCCCTTTTATATGGGTCTGGAGAAAACAGCC 240
consensus_652#1 T--TACAAAACCAATTCCTATGGAATGCATCCCTTTTATATGGGTCTGGAGAAAACAGCC 133
*********************************************************
consensus_652#0 GATGCTCACGGCGTCCTGCTGCTGAACAGTAATGCCATGGATGTGACTTTGCAGCCAACT 300
consensus_652#1 GATGCTCACGGCGTCCTGCTGCTGAACAGTAATGCCATGGATGTGACTTTGCAGCCAACT 193
************************************************************
consensus_652#0 CCAGCGTTAACCTACAGAACAGTCGGAGGCATCTTGGATTTCTACATGGTCCTGGGACCT 360
consensus_652#1 CCAGCGTTAACCTACAGAACAGTCGGAGGCATCTTGGATTTCTACATGGTCCTGGGACCT 253
************************************************************
consensus_652#0 ACGCCAGAAATGGTGGTGCAGGAGTACACACAACTGATAGGACGACCCGTACTACCTGCC 420
consensus_652#1 ACGCCAGAAATGGTGGTGCAGGAGTACACACAACTGATAGGACGACCCGTACTACCTGCC 313
************************************************************
consensus_652#0 TATTGGACTCTGGGGTTCCAGCTCTGTCGCTATGGTTATGCCAATGACTCAGAAATAGAA 480
consensus_652#1 TATTGGACTCTGGGGTTCCAGCTCTGTCGCTATGGTTATGCCAATGACTCAGAAATAGAA 373
************************************************************
consensus_652#0 GATCTGTACAACAGTATGAGGGCTGCTGGGATCCCCTATGATGTGCAGTATGCTGACATT 540
consensus_652#1 GATCTGTACAACAGTATGAGGGCTGCTGGTATCCCCTATGATGTGCAGTATGCTGACATT 433
***************************** ******************************
consensus_652#0 GACTACATGGACCGCCAACTGAACTTTGTCCTTGATTCGGAATTCTCCCAGTTGCCTGCA 600
consensus_652#1 GACTACATGGACCGCCAACTGAACTTCGTCCTTGATTCGGAATTCTCCAAGTTGCCTGCA 493
************************** ********************* ***********
consensus_652#0 CTGGTGGACCGCATTCAGGATGAGGGCGGCAGATTTATTATTATTTCTGATCCAGCGATC 660
consensus_652#1 CTGGTGGAGCGCATTCAGGATGAGGGCGGCAGATTTATTATTATTCTGGATCCAGCGATC 553
******** ************************************ ************
consensus_652#0 TCCGGCAATGAG------------------------------------------------ 672
consensus_652#1 TCCGGCAATGAGACGGTCCCTTACCCCGCCTTTGACAGGGGAGTGGCCGATGACGTTTTC 613
************
consensus_652#0 -----------------------------
consensus_652#1 ATCAAGTGGCCCAAAAACCTCAGTGATGA 642
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |