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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_653#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 771 fasta sequence
[TCTCATGGAGGCACAAAAGCGCTGCATGATTCTGACTGCTTTGAGCCCTTGCGTGCAGAATGCATTGGATATTTGATTTAATCGGATCCTTCCTTGCAGGGGATTTTAAAAGTCTGCTGTTTTTCTTGTTGATTTTCATCCTGACTGCAGATTACTTAAGGAACCGTAGGTCTGGCAGCTTCCCTCCGGGACCCACGGCGATTCCTATTATAGGCAACATGCTCTCTCTTGACCGCAGCAGGACTCATGAGAGTCTGACTCAGGTAGATCGAAAGCAATTCTAATGCATCTGTTCTGATTACCACTTACGTTATTGTGCTCCTCACCTGTCGCATCTGTTCCCAGTTGGCAGAGACATATGGGAACGTGTACAGCCTGCGAACGGGCCAGACATGGATGGTGGTGGTCAACAGTTTTAAAGTCGTGAGAGAAGCTTTGGTAACTCATGGTGAAAGTGTGTCCGACCGTCCAGACCTCCCTCTGCAGGATGAAATAGCGCATGGAAAGGGCGTCATTTCCAGTAATGGCCACTTGTGGAAGCAGCAGAGGCGTTTCGCACTTTCAACCCTCAGATTGTTCGGATTTGGCAAGAAGTCACTCGAACCTTTCATCACTGATGAGTTCACACACTGCGCTAACATTTTCCGTAGCTACAAAGGTAAACCACTCCCCCCTCACCTCATCCTCAACAACGTCGTCTCCAACATCATCTGCTCGCTGGTTTTCGGTCATCGCTTCGAATATGGTGACAAGAACTTCAAGAATCTGATC]
[+] EMBL CA588244 [TCTCATGGAGGCACAAAAGCGCTGCATGATTCTGACTGCTTTGAGCCCTTGCGTGCAGAATGCATTGGATATTTGATTTAATCGGATCCTTCCTTGCAGGGGATTTTAAAAGTCTGCTGTTTTTCTTGTTGATTTTCATCCTGACTGCAGATTACTTAAGGAACCGTAGGTCTGGCAGCTTCCCTCCGGGACCCACGGCGATTCCTATTATAGGCAACATGCTCTCTCTTGACCGCAGCAGGACTCATGAGAGTCTGACTCAGGTAGATCGAAAGCAATTCTAATGCATCTGTTCTGATTACCACTTACGTTATTGTGCTCCTCACCTGTCGCATCTGTTCCCAGTTGGCAGAGACATATGGGAACGTGTACAGCCTGCGAACGGGCCAGACATGGATGGTGGTGGTCAACAGTTTTAAAGTCGTGAGAGAAGCTTTGGTAACTCATGGTGAAAGTGTGTCCGACCGTCCAGACCTCCCTCTGCAGGATGAAATAGCGCATGGAAAGGGCGTCATTTCCAGTAATGGCCACTTGTGGAAGCAGCAGAGGCGTTTCGCACTTTCAACCCTCAGATTGTTCGGATTTGGCAAGAAGTCACTCGAACCTTTCATCACTGATGAGTTCACACACTGCGCTAACATTTTCCGTAGCTACAAAGGTAAACCACTCCCCCCTCACCTCATCCTCAACAACGTCGTCTCCAACATCATCTGCTCGCTGGTTTTCGGTCATCGCTTCGAATATGGTGACAAGAACTTCAAGAATCTGATC]
consensusID : consensus_653#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 763 fasta sequence
[CGATCAAGAAAGCGCTGCATGATTCTGACTGCTTTGAGCCCCCTCGAGCAGAATGCATTGGATATTTGATTTAATCGGATCCTTCCTTGCAGGGGATTTTAAAAGTCTGCTGTTTTTCTTGTTGATTTTCATCCTGACTGCAGATTACTTAAGGAACCGTAGGTCTGGCAGCTTCCCTCCGGGACCCACGGCGATTCCTATTATAGGCAACATGCTCTCTCTTGACCGCAGCAGGACCCATGAGAGTCTGACTCAGTTGGCAGAGACATATGGGAACGTGTACAGCCTGCGAACGGGCCAGACATGGATGGTGGTGGTCAACAGTTTTAAAGTCGTGAGAGAAGCTTTGGTAACTCATGGTGAAAGTGTGTCCGACCGTCCAGACCTCCCTCTGCAGGATGAAATAGCGCATGGAAAGGGCGTCATTTCCAGTAATGGCCACTTGTGGAAGCAGCAGAGGCGTTTCGCACTTTCAACCCTCAGATTGTTCGGATTTGGCAAGAAGTCACTCGAACCTTTCATCACTGATGAGTTCACACACTGCGCTAACATTTTCCGTAGCTACAAAGGTAAACCACTCCCCCCTCACCTCATCCTCAACAACGTCGTCTCCAACATCATCTGCTCGCTGGTTTTCGGTCATCGCTTCGAATATGGTGACAAGAACTTCAAGAATCTGATCAAGTTGTTTGACCAGAGCCTGCAGATCGAAGCCTCTGTTTGGGCGGAGCTCTACAACTCATTTCCTCTGTTGACGAAACAC]
[+] EMBL CA588335 [CGATCAAGAAAGCGCTGCATGATTCTGACTGCTTTGAGCCCCCTCGAGCAGAATGCATTGGATATTTGATTTAATCGGATCCTTCCTTGCAGGGGATTTTAAAAGTCTGCTGTTTTTCTTGTTGATTTTCATCCTGACTGCAGATTACTTAAGGAACCGTAGGTCTGGCAGCTTCCCTCCGGGACCCACGGCGATTCCTATTATAGGCAACATGCTCTCTCTTGACCGCAGCAGGACCCATGAGAGTCTGACTCAGTTGGCAGAGACATATGGGAACGTGTACAGCCTGCGAACGGGCCAGACATGGATGGTGGTGGTCAACAGTTTTAAAGTCGTGAGAGAAGCTTTGGTAACTCATGGTGAAAGTGTGTCCGACCGTCCAGACCTCCCTCTGCAGGATGAAATAGCGCATGGAAAGGGCGTCATTTCCAGTAATGGCCACTTGTGGAAGCAGCAGAGGCGTTTCGCACTTTCAACCCTCAGATTGTTCGGATTTGGCAAGAAGTCACTCGAACCTTTCATCACTGATGAGTTCACACACTGCGCTAACATTTTCCGTAGCTACAAAGGTAAACCACTCCCCCCTCACCTCATCCTCAACAACGTCGTCTCCAACATCATCTGCTCGCTGGTTTTCGGTCATCGCTTCGAATATGGTGACAAGAACTTCAAGAATCTGATCAAGTTGTTTGACCAGAGCCTGCAGATCGAAGCCTCTGTTTGGGCGGAGCTCTACAACTCATTTCCTCTGTTGACGAAACAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_653#0 TCTCATGGAGGCACAAAAGCGCTGCATGATTCTGACTGCTTTGAGCCCTTGCGTGCAGAA 60
consensus_653#1 -------CGATCAAGAAAGCGCTGCATGATTCTGACTGCTTTGAGCCCCCTCGAGCAGAA 53
** ********************************* ** ******
consensus_653#0 TGCATTGGATATTTGATTTAATCGGATCCTTCCTTGCAGGGGATTTTAAAAGTCTGCTGT 120
consensus_653#1 TGCATTGGATATTTGATTTAATCGGATCCTTCCTTGCAGGGGATTTTAAAAGTCTGCTGT 113
************************************************************
consensus_653#0 TTTTCTTGTTGATTTTCATCCTGACTGCAGATTACTTAAGGAACCGTAGGTCTGGCAGCT 180
consensus_653#1 TTTTCTTGTTGATTTTCATCCTGACTGCAGATTACTTAAGGAACCGTAGGTCTGGCAGCT 173
************************************************************
consensus_653#0 TCCCTCCGGGACCCACGGCGATTCCTATTATAGGCAACATGCTCTCTCTTGACCGCAGCA 240
consensus_653#1 TCCCTCCGGGACCCACGGCGATTCCTATTATAGGCAACATGCTCTCTCTTGACCGCAGCA 233
************************************************************
consensus_653#0 GGACTCATGAGAGTCTGACTCAGGTAGATCGAAAGCAATTCTAATGCATCTGTTCTGATT 300
consensus_653#1 GGACCCATGAGAGTCTGACTCAG------------------------------------- 256
**** ******************
consensus_653#0 ACCACTTACGTTATTGTGCTCCTCACCTGTCGCATCTGTTCCCAGTTGGCAGAGACATAT 360
consensus_653#1 ---------------------------------------------TTGGCAGAGACATAT 271
***************
consensus_653#0 GGGAACGTGTACAGCCTGCGAACGGGCCAGACATGGATGGTGGTGGTCAACAGTTTTAAA 420
consensus_653#1 GGGAACGTGTACAGCCTGCGAACGGGCCAGACATGGATGGTGGTGGTCAACAGTTTTAAA 331
************************************************************
consensus_653#0 GTCGTGAGAGAAGCTTTGGTAACTCATGGTGAAAGTGTGTCCGACCGTCCAGACCTCCCT 480
consensus_653#1 GTCGTGAGAGAAGCTTTGGTAACTCATGGTGAAAGTGTGTCCGACCGTCCAGACCTCCCT 391
************************************************************
consensus_653#0 CTGCAGGATGAAATAGCGCATGGAAAGGGCGTCATTTCCAGTAATGGCCACTTGTGGAAG 540
consensus_653#1 CTGCAGGATGAAATAGCGCATGGAAAGGGCGTCATTTCCAGTAATGGCCACTTGTGGAAG 451
************************************************************
consensus_653#0 CAGCAGAGGCGTTTCGCACTTTCAACCCTCAGATTGTTCGGATTTGGCAAGAAGTCACTC 600
consensus_653#1 CAGCAGAGGCGTTTCGCACTTTCAACCCTCAGATTGTTCGGATTTGGCAAGAAGTCACTC 511
************************************************************
consensus_653#0 GAACCTTTCATCACTGATGAGTTCACACACTGCGCTAACATTTTCCGTAGCTACAAAGGT 660
consensus_653#1 GAACCTTTCATCACTGATGAGTTCACACACTGCGCTAACATTTTCCGTAGCTACAAAGGT 571
************************************************************
consensus_653#0 AAACCACTCCCCCCTCACCTCATCCTCAACAACGTCGTCTCCAACATCATCTGCTCGCTG 720
consensus_653#1 AAACCACTCCCCCCTCACCTCATCCTCAACAACGTCGTCTCCAACATCATCTGCTCGCTG 631
************************************************************
consensus_653#0 GTTTTCGGTCATCGCTTCGAATATGGTGACAAGAACTTCAAGAATCTGATC--------- 771
consensus_653#1 GTTTTCGGTCATCGCTTCGAATATGGTGACAAGAACTTCAAGAATCTGATCAAGTTGTTT 691
***************************************************
consensus_653#0 ------------------------------------------------------------
consensus_653#1 GACCAGAGCCTGCAGATCGAAGCCTCTGTTTGGGCGGAGCTCTACAACTCATTTCCTCTG 751
consensus_653#0 ------------
consensus_653#1 TTGACGAAACAC 763
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |