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Takifugu rubripes
cluster # 662 cluster # 662       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_662#0 length = 721 sequences # 1  
consensus_662#1 length = 484 sequences # 1  

consensusID : consensus_662#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 721
fasta sequence
                              [AGATTTGTGGATGTTTTTTAACACTTTGACGAGATGAAATTGCTCAGGTCTTCTCAACCATTCTCTAACACCCAAAACATTCTGTCGCATTTTAATTTGATTGTTGAACCCTAGGTACATTCTTTGTTAGCTTGCACCGAATTAGCTGTTAAACTGGACAGGACAGTCACCAGAAGGAAACGACACCACTTTTGTCGAGAAAATTGTCTAGAACAGCCACAAACCTGAAAATAGACAAACCTGCAGCCCTGAGCAACCAGGATCGACTGAATAACTAATTCCTTACGCAGACAGACAGGTCAATCTACTCTTAATTTAAAACAAGTATGTGCAGACTTGAGAACCCTTGTTTGCTTTCTTTTCTCCATCAAGATGTCATTTCTTGTGAGTATCAACAGCTGTCACCTTATCTTGACAGAAAACCTGCTGACAGAACATGACCGCCTCTGCAAATGCAGTCACTGTTATCATATAATGTTAACATTTTTAGTTTAAACGCACCAGCACACAGTGTTACACATAATAAGTGAAGAATTAAGCAAAAGCTTGTGTAGGGAGAGAAAATACCCTTAAACATCATCTAAAAGGTCAGTTTAGATGAGAAGAAATTACACTTGTGCTTCTGTAGCTTTGTCAAACTACATATTTTTCTTTGGATAATTTCACCATGCTAAAGATATTACCGGCCCTGAGATCCCAGAGAGGAACATCTGACCACCGG]

[+] EMBL CA588321             [AGATTTGTGGATGTTTTTTAACACTTTGACGAGATGAAATTGCTCAGGTCTTCTCAACCATTCTCTAACACCCAAAACATTCTGTCGCATTTTAATTTGATTGTTGAACCCTAGGTACATTCTTTGTTAGCTTGCACCGAATTAGCTGTTAAACTGGACAGGACAGTCACCAGAAGGAAACGACACCACTTTTGTCGAGAAAATTGTCTAGAACAGCCACAAACCTGAAAATAGACAAACCTGCAGCCCTGAGCAACCAGGATCGACTGAATAACTAATTCCTTACGCAGACAGACAGGTCAATCTACTCTTAATTTAAAACAAGTATGTGCAGACTTGAGAACCCTTGTTTGCTTTCTTTTCTCCATCAAGATGTCATTTCTTGTGAGTATCAACAGCTGTCACCTTATCTTGACAGAAAACCTGCTGACAGAACATGACCGCCTCTGCAAATGCAGTCACTGTTATCATATAATGTTAACATTTTTAGTTTAAACGCACCAGCACACAGTGTTACACATAATAAGTGAAGAATTAAGCAAAAGCTTGTGTAGGGAGAGAAAATACCCTTAAACATCATCTAAAAGGTCAGTTTAGATGAGAAGAAATTACACTTGTGCTTCTGTAGCTTTGTCAAACTACATATTTTTCTTTGGATAATTTCACCATGCTAAAGATATTACCGGCCCTGAGATCCCAGAGAGGAACATCTGACCACCGG]


>consensus_662#0 AGATTTGTGGATGTTTTTTAACACTTTGACGAGATGAAATTGCTCAGGTCTTCTCAACCA TTCTCTAACACCCAAAACATTCTGTCGCATTTTAATTTGATTGTTGAACCCTAGGTACAT TCTTTGTTAGCTTGCACCGAATTAGCTGTTAAACTGGACAGGACAGTCACCAGAAGGAAA CGACACCACTTTTGTCGAGAAAATTGTCTAGAACAGCCACAAACCTGAAAATAGACAAAC CTGCAGCCCTGAGCAACCAGGATCGACTGAATAACTAATTCCTTACGCAGACAGACAGGT CAATCTACTCTTAATTTAAAACAAGTATGTGCAGACTTGAGAACCCTTGTTTGCTTTCTT TTCTCCATCAAGATGTCATTTCTTGTGAGTATCAACAGCTGTCACCTTATCTTGACAGAA AACCTGCTGACAGAACATGACCGCCTCTGCAAATGCAGTCACTGTTATCATATAATGTTA ACATTTTTAGTTTAAACGCACCAGCACACAGTGTTACACATAATAAGTGAAGAATTAAGC AAAAGCTTGTGTAGGGAGAGAAAATACCCTTAAACATCATCTAAAAGGTCAGTTTAGATG AGAAGAAATTACACTTGTGCTTCTGTAGCTTTGTCAAACTACATATTTTTCTTTGGATAA TTTCACCATGCTAAAGATATTACCGGCCCTGAGATCCCAGAGAGGAACATCTGACCACCG G



consensusID : consensus_662#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 484
fasta sequence
                              [CGGCTACTACAGCAATCAAACTTTCAAGATTTGTGGATGTTTTTTAACACTTTGACGAGATGAAATTGCTCAGGTCTTCTCAACCATTCTCTAACACCCAAAACATTCTGTCGCATTTTAATTTGATTGTTGAACCCTAGGTACATTCTTTGTTAGCTTGCACCGAATTAGCTGTTAAACTGGACAGGACAGTCACCAGAAGGAAACGACACCACTTTTGTCGAGAAAATTGTCTAGAACAGCCACAAACCTGAAAATAGACAAACCTGCAGCCCTGAGCAACCAGGATCGACTGAATAACTAATTCCTTACGCAGACAGACAGGTCAATCTACTCTTAATTTAAAACAAGTATGTGCAGACTTGAGAACCCTTGTTTGCTTTCTTTTCTCCATCAAGATGTCATTTCTTATATTACCGGCCCTGAGATCCCAGAGAGGAACATCTGACCACCGGCACTGACCACTAACGTTGGGTCCGCTCAT]

[+] EMBL FR0061340            [CGGCTACTACAGCAATCAAACTTTCAAGATTTGTGGATGTTTTTTAACACTTTGACGAGATGAAATTGCTCAGGTCTTCTCAACCATTCTCTAACACCCAAAACATTCTGTCGCATTTTAATTTGATTGTTGAACCCTAGGTACATTCTTTGTTAGCTTGCACCGAATTAGCTGTTAAACTGGACAGGACAGTCACCAGAAGGAAACGACACCACTTTTGTCGAGAAAATTGTCTAGAACAGCCACAAACCTGAAAATAGACAAACCTGCAGCCCTGAGCAACCAGGATCGACTGAATAACTAATTCCTTACGCAGACAGACAGGTCAATCTACTCTTAATTTAAAACAAGTATGTGCAGACTTGAGAACCCTTGTTTGCTTTCTTTTCTCCATCAAGATGTCATTTCTTATATTACCGGCCCTGAGATCCCAGAGAGGAACATCTGACCACCGGCACTGACCACTAACGTTGGGTCCGCTCAT]


>consensus_662#1 CGGCTACTACAGCAATCAAACTTTCAAGATTTGTGGATGTTTTTTAACACTTTGACGAGA TGAAATTGCTCAGGTCTTCTCAACCATTCTCTAACACCCAAAACATTCTGTCGCATTTTA ATTTGATTGTTGAACCCTAGGTACATTCTTTGTTAGCTTGCACCGAATTAGCTGTTAAAC TGGACAGGACAGTCACCAGAAGGAAACGACACCACTTTTGTCGAGAAAATTGTCTAGAAC AGCCACAAACCTGAAAATAGACAAACCTGCAGCCCTGAGCAACCAGGATCGACTGAATAA CTAATTCCTTACGCAGACAGACAGGTCAATCTACTCTTAATTTAAAACAAGTATGTGCAG ACTTGAGAACCCTTGTTTGCTTTCTTTTCTCCATCAAGATGTCATTTCTTATATTACCGG CCCTGAGATCCCAGAGAGGAACATCTGACCACCGGCACTGACCACTAACGTTGGGTCCGC TCAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_662#0      --------------------------AGATTTGTGGATGTTTTTTAACACTTTGACGAGA 34
consensus_662#1      CGGCTACTACAGCAATCAAACTTTCAAGATTTGTGGATGTTTTTTAACACTTTGACGAGA 60
                                               **********************************

consensus_662#0      TGAAATTGCTCAGGTCTTCTCAACCATTCTCTAACACCCAAAACATTCTGTCGCATTTTA 94
consensus_662#1      TGAAATTGCTCAGGTCTTCTCAACCATTCTCTAACACCCAAAACATTCTGTCGCATTTTA 120
                     ************************************************************

consensus_662#0      ATTTGATTGTTGAACCCTAGGTACATTCTTTGTTAGCTTGCACCGAATTAGCTGTTAAAC 154
consensus_662#1      ATTTGATTGTTGAACCCTAGGTACATTCTTTGTTAGCTTGCACCGAATTAGCTGTTAAAC 180
                     ************************************************************

consensus_662#0      TGGACAGGACAGTCACCAGAAGGAAACGACACCACTTTTGTCGAGAAAATTGTCTAGAAC 214
consensus_662#1      TGGACAGGACAGTCACCAGAAGGAAACGACACCACTTTTGTCGAGAAAATTGTCTAGAAC 240
                     ************************************************************

consensus_662#0      AGCCACAAACCTGAAAATAGACAAACCTGCAGCCCTGAGCAACCAGGATCGACTGAATAA 274
consensus_662#1      AGCCACAAACCTGAAAATAGACAAACCTGCAGCCCTGAGCAACCAGGATCGACTGAATAA 300
                     ************************************************************

consensus_662#0      CTAATTCCTTACGCAGACAGACAGGTCAATCTACTCTTAATTTAAAACAAGTATGTGCAG 334
consensus_662#1      CTAATTCCTTACGCAGACAGACAGGTCAATCTACTCTTAATTTAAAACAAGTATGTGCAG 360
                     ************************************************************

consensus_662#0      ACTTGAGAACCCTTGTTTGCTTTCTTTTCTCCATCAAGATGTCATTTCTTGTGAGTATCA 394
consensus_662#1      ACTTGAGAACCCTTGTTTGCTTTCTTTTCTCCATCAAGATGTCATTTCTTAT----ATTA 416
                     ************************************************** *    ** *

consensus_662#0      ACAGCTGTCACCTTATCTTGACAGAAAACCTGCTGACAGAACATGACCGCCTCTGC-AAA 453
consensus_662#1      CCGGCCCTGAGATC-CCAGAGAGGAACATCTGACCACCGGCACTGACCACTAACGTTGGG 475
                      * **  * *  *   *      *** * ***   ** *    ***** *    *     

consensus_662#0      TGCAGTCACTGTTATCATATAATGTTAACATTTTTAGTTTAAACGCACCAGCACACAGTG 513
consensus_662#1      TCCGCTCAT--------------------------------------------------- 484
                     * *  ***                                                    

consensus_662#0      TTACACATAATAAGTGAAGAATTAAGCAAAAGCTTGTGTAGGGAGAGAAAATACCCTTAA 573
consensus_662#1      ------------------------------------------------------------
                                                                                 

consensus_662#0      ACATCATCTAAAAGGTCAGTTTAGATGAGAAGAAATTACACTTGTGCTTCTGTAGCTTTG 633
consensus_662#1      ------------------------------------------------------------
                                                                                 

consensus_662#0      TCAAACTACATATTTTTCTTTGGATAATTTCACCATGCTAAAGATATTACCGGCCCTGAG 693
consensus_662#1      ------------------------------------------------------------
                                                                                 

consensus_662#0      ATCCCAGAGAGGAACATCTGACCACCGG 721
consensus_662#1      ----------------------------
                                                 




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)