|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_662#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 721 fasta sequence
[AGATTTGTGGATGTTTTTTAACACTTTGACGAGATGAAATTGCTCAGGTCTTCTCAACCATTCTCTAACACCCAAAACATTCTGTCGCATTTTAATTTGATTGTTGAACCCTAGGTACATTCTTTGTTAGCTTGCACCGAATTAGCTGTTAAACTGGACAGGACAGTCACCAGAAGGAAACGACACCACTTTTGTCGAGAAAATTGTCTAGAACAGCCACAAACCTGAAAATAGACAAACCTGCAGCCCTGAGCAACCAGGATCGACTGAATAACTAATTCCTTACGCAGACAGACAGGTCAATCTACTCTTAATTTAAAACAAGTATGTGCAGACTTGAGAACCCTTGTTTGCTTTCTTTTCTCCATCAAGATGTCATTTCTTGTGAGTATCAACAGCTGTCACCTTATCTTGACAGAAAACCTGCTGACAGAACATGACCGCCTCTGCAAATGCAGTCACTGTTATCATATAATGTTAACATTTTTAGTTTAAACGCACCAGCACACAGTGTTACACATAATAAGTGAAGAATTAAGCAAAAGCTTGTGTAGGGAGAGAAAATACCCTTAAACATCATCTAAAAGGTCAGTTTAGATGAGAAGAAATTACACTTGTGCTTCTGTAGCTTTGTCAAACTACATATTTTTCTTTGGATAATTTCACCATGCTAAAGATATTACCGGCCCTGAGATCCCAGAGAGGAACATCTGACCACCGG]
[+] EMBL CA588321 [AGATTTGTGGATGTTTTTTAACACTTTGACGAGATGAAATTGCTCAGGTCTTCTCAACCATTCTCTAACACCCAAAACATTCTGTCGCATTTTAATTTGATTGTTGAACCCTAGGTACATTCTTTGTTAGCTTGCACCGAATTAGCTGTTAAACTGGACAGGACAGTCACCAGAAGGAAACGACACCACTTTTGTCGAGAAAATTGTCTAGAACAGCCACAAACCTGAAAATAGACAAACCTGCAGCCCTGAGCAACCAGGATCGACTGAATAACTAATTCCTTACGCAGACAGACAGGTCAATCTACTCTTAATTTAAAACAAGTATGTGCAGACTTGAGAACCCTTGTTTGCTTTCTTTTCTCCATCAAGATGTCATTTCTTGTGAGTATCAACAGCTGTCACCTTATCTTGACAGAAAACCTGCTGACAGAACATGACCGCCTCTGCAAATGCAGTCACTGTTATCATATAATGTTAACATTTTTAGTTTAAACGCACCAGCACACAGTGTTACACATAATAAGTGAAGAATTAAGCAAAAGCTTGTGTAGGGAGAGAAAATACCCTTAAACATCATCTAAAAGGTCAGTTTAGATGAGAAGAAATTACACTTGTGCTTCTGTAGCTTTGTCAAACTACATATTTTTCTTTGGATAATTTCACCATGCTAAAGATATTACCGGCCCTGAGATCCCAGAGAGGAACATCTGACCACCGG]
consensusID : consensus_662#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence
[CGGCTACTACAGCAATCAAACTTTCAAGATTTGTGGATGTTTTTTAACACTTTGACGAGATGAAATTGCTCAGGTCTTCTCAACCATTCTCTAACACCCAAAACATTCTGTCGCATTTTAATTTGATTGTTGAACCCTAGGTACATTCTTTGTTAGCTTGCACCGAATTAGCTGTTAAACTGGACAGGACAGTCACCAGAAGGAAACGACACCACTTTTGTCGAGAAAATTGTCTAGAACAGCCACAAACCTGAAAATAGACAAACCTGCAGCCCTGAGCAACCAGGATCGACTGAATAACTAATTCCTTACGCAGACAGACAGGTCAATCTACTCTTAATTTAAAACAAGTATGTGCAGACTTGAGAACCCTTGTTTGCTTTCTTTTCTCCATCAAGATGTCATTTCTTATATTACCGGCCCTGAGATCCCAGAGAGGAACATCTGACCACCGGCACTGACCACTAACGTTGGGTCCGCTCAT]
[+] EMBL FR0061340 [CGGCTACTACAGCAATCAAACTTTCAAGATTTGTGGATGTTTTTTAACACTTTGACGAGATGAAATTGCTCAGGTCTTCTCAACCATTCTCTAACACCCAAAACATTCTGTCGCATTTTAATTTGATTGTTGAACCCTAGGTACATTCTTTGTTAGCTTGCACCGAATTAGCTGTTAAACTGGACAGGACAGTCACCAGAAGGAAACGACACCACTTTTGTCGAGAAAATTGTCTAGAACAGCCACAAACCTGAAAATAGACAAACCTGCAGCCCTGAGCAACCAGGATCGACTGAATAACTAATTCCTTACGCAGACAGACAGGTCAATCTACTCTTAATTTAAAACAAGTATGTGCAGACTTGAGAACCCTTGTTTGCTTTCTTTTCTCCATCAAGATGTCATTTCTTATATTACCGGCCCTGAGATCCCAGAGAGGAACATCTGACCACCGGCACTGACCACTAACGTTGGGTCCGCTCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_662#0 --------------------------AGATTTGTGGATGTTTTTTAACACTTTGACGAGA 34
consensus_662#1 CGGCTACTACAGCAATCAAACTTTCAAGATTTGTGGATGTTTTTTAACACTTTGACGAGA 60
**********************************
consensus_662#0 TGAAATTGCTCAGGTCTTCTCAACCATTCTCTAACACCCAAAACATTCTGTCGCATTTTA 94
consensus_662#1 TGAAATTGCTCAGGTCTTCTCAACCATTCTCTAACACCCAAAACATTCTGTCGCATTTTA 120
************************************************************
consensus_662#0 ATTTGATTGTTGAACCCTAGGTACATTCTTTGTTAGCTTGCACCGAATTAGCTGTTAAAC 154
consensus_662#1 ATTTGATTGTTGAACCCTAGGTACATTCTTTGTTAGCTTGCACCGAATTAGCTGTTAAAC 180
************************************************************
consensus_662#0 TGGACAGGACAGTCACCAGAAGGAAACGACACCACTTTTGTCGAGAAAATTGTCTAGAAC 214
consensus_662#1 TGGACAGGACAGTCACCAGAAGGAAACGACACCACTTTTGTCGAGAAAATTGTCTAGAAC 240
************************************************************
consensus_662#0 AGCCACAAACCTGAAAATAGACAAACCTGCAGCCCTGAGCAACCAGGATCGACTGAATAA 274
consensus_662#1 AGCCACAAACCTGAAAATAGACAAACCTGCAGCCCTGAGCAACCAGGATCGACTGAATAA 300
************************************************************
consensus_662#0 CTAATTCCTTACGCAGACAGACAGGTCAATCTACTCTTAATTTAAAACAAGTATGTGCAG 334
consensus_662#1 CTAATTCCTTACGCAGACAGACAGGTCAATCTACTCTTAATTTAAAACAAGTATGTGCAG 360
************************************************************
consensus_662#0 ACTTGAGAACCCTTGTTTGCTTTCTTTTCTCCATCAAGATGTCATTTCTTGTGAGTATCA 394
consensus_662#1 ACTTGAGAACCCTTGTTTGCTTTCTTTTCTCCATCAAGATGTCATTTCTTAT----ATTA 416
************************************************** * ** *
consensus_662#0 ACAGCTGTCACCTTATCTTGACAGAAAACCTGCTGACAGAACATGACCGCCTCTGC-AAA 453
consensus_662#1 CCGGCCCTGAGATC-CCAGAGAGGAACATCTGACCACCGGCACTGACCACTAACGTTGGG 475
* ** * * * * *** * *** ** * ***** * *
consensus_662#0 TGCAGTCACTGTTATCATATAATGTTAACATTTTTAGTTTAAACGCACCAGCACACAGTG 513
consensus_662#1 TCCGCTCAT--------------------------------------------------- 484
* * ***
consensus_662#0 TTACACATAATAAGTGAAGAATTAAGCAAAAGCTTGTGTAGGGAGAGAAAATACCCTTAA 573
consensus_662#1 ------------------------------------------------------------
consensus_662#0 ACATCATCTAAAAGGTCAGTTTAGATGAGAAGAAATTACACTTGTGCTTCTGTAGCTTTG 633
consensus_662#1 ------------------------------------------------------------
consensus_662#0 TCAAACTACATATTTTTCTTTGGATAATTTCACCATGCTAAAGATATTACCGGCCCTGAG 693
consensus_662#1 ------------------------------------------------------------
consensus_662#0 ATCCCAGAGAGGAACATCTGACCACCGG 721
consensus_662#1 ----------------------------
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |