These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_662#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 721 fasta sequence [AGATTTGTGGATGTTTTTTAACACTTTGACGAGATGAAATTGCTCAGGTCTTCTCAACCATTCTCTAACACCCAAAACATTCTGTCGCATTTTAATTTGATTGTTGAACCCTAGGTACATTCTTTGTTAGCTTGCACCGAATTAGCTGTTAAACTGGACAGGACAGTCACCAGAAGGAAACGACACCACTTTTGTCGAGAAAATTGTCTAGAACAGCCACAAACCTGAAAATAGACAAACCTGCAGCCCTGAGCAACCAGGATCGACTGAATAACTAATTCCTTACGCAGACAGACAGGTCAATCTACTCTTAATTTAAAACAAGTATGTGCAGACTTGAGAACCCTTGTTTGCTTTCTTTTCTCCATCAAGATGTCATTTCTTGTGAGTATCAACAGCTGTCACCTTATCTTGACAGAAAACCTGCTGACAGAACATGACCGCCTCTGCAAATGCAGTCACTGTTATCATATAATGTTAACATTTTTAGTTTAAACGCACCAGCACACAGTGTTACACATAATAAGTGAAGAATTAAGCAAAAGCTTGTGTAGGGAGAGAAAATACCCTTAAACATCATCTAAAAGGTCAGTTTAGATGAGAAGAAATTACACTTGTGCTTCTGTAGCTTTGTCAAACTACATATTTTTCTTTGGATAATTTCACCATGCTAAAGATATTACCGGCCCTGAGATCCCAGAGAGGAACATCTGACCACCGG] [+] EMBL CA588321 [AGATTTGTGGATGTTTTTTAACACTTTGACGAGATGAAATTGCTCAGGTCTTCTCAACCATTCTCTAACACCCAAAACATTCTGTCGCATTTTAATTTGATTGTTGAACCCTAGGTACATTCTTTGTTAGCTTGCACCGAATTAGCTGTTAAACTGGACAGGACAGTCACCAGAAGGAAACGACACCACTTTTGTCGAGAAAATTGTCTAGAACAGCCACAAACCTGAAAATAGACAAACCTGCAGCCCTGAGCAACCAGGATCGACTGAATAACTAATTCCTTACGCAGACAGACAGGTCAATCTACTCTTAATTTAAAACAAGTATGTGCAGACTTGAGAACCCTTGTTTGCTTTCTTTTCTCCATCAAGATGTCATTTCTTGTGAGTATCAACAGCTGTCACCTTATCTTGACAGAAAACCTGCTGACAGAACATGACCGCCTCTGCAAATGCAGTCACTGTTATCATATAATGTTAACATTTTTAGTTTAAACGCACCAGCACACAGTGTTACACATAATAAGTGAAGAATTAAGCAAAAGCTTGTGTAGGGAGAGAAAATACCCTTAAACATCATCTAAAAGGTCAGTTTAGATGAGAAGAAATTACACTTGTGCTTCTGTAGCTTTGTCAAACTACATATTTTTCTTTGGATAATTTCACCATGCTAAAGATATTACCGGCCCTGAGATCCCAGAGAGGAACATCTGACCACCGG] consensusID : consensus_662#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence [CGGCTACTACAGCAATCAAACTTTCAAGATTTGTGGATGTTTTTTAACACTTTGACGAGATGAAATTGCTCAGGTCTTCTCAACCATTCTCTAACACCCAAAACATTCTGTCGCATTTTAATTTGATTGTTGAACCCTAGGTACATTCTTTGTTAGCTTGCACCGAATTAGCTGTTAAACTGGACAGGACAGTCACCAGAAGGAAACGACACCACTTTTGTCGAGAAAATTGTCTAGAACAGCCACAAACCTGAAAATAGACAAACCTGCAGCCCTGAGCAACCAGGATCGACTGAATAACTAATTCCTTACGCAGACAGACAGGTCAATCTACTCTTAATTTAAAACAAGTATGTGCAGACTTGAGAACCCTTGTTTGCTTTCTTTTCTCCATCAAGATGTCATTTCTTATATTACCGGCCCTGAGATCCCAGAGAGGAACATCTGACCACCGGCACTGACCACTAACGTTGGGTCCGCTCAT] [+] EMBL FR0061340 [CGGCTACTACAGCAATCAAACTTTCAAGATTTGTGGATGTTTTTTAACACTTTGACGAGATGAAATTGCTCAGGTCTTCTCAACCATTCTCTAACACCCAAAACATTCTGTCGCATTTTAATTTGATTGTTGAACCCTAGGTACATTCTTTGTTAGCTTGCACCGAATTAGCTGTTAAACTGGACAGGACAGTCACCAGAAGGAAACGACACCACTTTTGTCGAGAAAATTGTCTAGAACAGCCACAAACCTGAAAATAGACAAACCTGCAGCCCTGAGCAACCAGGATCGACTGAATAACTAATTCCTTACGCAGACAGACAGGTCAATCTACTCTTAATTTAAAACAAGTATGTGCAGACTTGAGAACCCTTGTTTGCTTTCTTTTCTCCATCAAGATGTCATTTCTTATATTACCGGCCCTGAGATCCCAGAGAGGAACATCTGACCACCGGCACTGACCACTAACGTTGGGTCCGCTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_662#0 --------------------------AGATTTGTGGATGTTTTTTAACACTTTGACGAGA 34 consensus_662#1 CGGCTACTACAGCAATCAAACTTTCAAGATTTGTGGATGTTTTTTAACACTTTGACGAGA 60 ********************************** consensus_662#0 TGAAATTGCTCAGGTCTTCTCAACCATTCTCTAACACCCAAAACATTCTGTCGCATTTTA 94 consensus_662#1 TGAAATTGCTCAGGTCTTCTCAACCATTCTCTAACACCCAAAACATTCTGTCGCATTTTA 120 ************************************************************ consensus_662#0 ATTTGATTGTTGAACCCTAGGTACATTCTTTGTTAGCTTGCACCGAATTAGCTGTTAAAC 154 consensus_662#1 ATTTGATTGTTGAACCCTAGGTACATTCTTTGTTAGCTTGCACCGAATTAGCTGTTAAAC 180 ************************************************************ consensus_662#0 TGGACAGGACAGTCACCAGAAGGAAACGACACCACTTTTGTCGAGAAAATTGTCTAGAAC 214 consensus_662#1 TGGACAGGACAGTCACCAGAAGGAAACGACACCACTTTTGTCGAGAAAATTGTCTAGAAC 240 ************************************************************ consensus_662#0 AGCCACAAACCTGAAAATAGACAAACCTGCAGCCCTGAGCAACCAGGATCGACTGAATAA 274 consensus_662#1 AGCCACAAACCTGAAAATAGACAAACCTGCAGCCCTGAGCAACCAGGATCGACTGAATAA 300 ************************************************************ consensus_662#0 CTAATTCCTTACGCAGACAGACAGGTCAATCTACTCTTAATTTAAAACAAGTATGTGCAG 334 consensus_662#1 CTAATTCCTTACGCAGACAGACAGGTCAATCTACTCTTAATTTAAAACAAGTATGTGCAG 360 ************************************************************ consensus_662#0 ACTTGAGAACCCTTGTTTGCTTTCTTTTCTCCATCAAGATGTCATTTCTTGTGAGTATCA 394 consensus_662#1 ACTTGAGAACCCTTGTTTGCTTTCTTTTCTCCATCAAGATGTCATTTCTTAT----ATTA 416 ************************************************** * ** * consensus_662#0 ACAGCTGTCACCTTATCTTGACAGAAAACCTGCTGACAGAACATGACCGCCTCTGC-AAA 453 consensus_662#1 CCGGCCCTGAGATC-CCAGAGAGGAACATCTGACCACCGGCACTGACCACTAACGTTGGG 475 * ** * * * * *** * *** ** * ***** * * consensus_662#0 TGCAGTCACTGTTATCATATAATGTTAACATTTTTAGTTTAAACGCACCAGCACACAGTG 513 consensus_662#1 TCCGCTCAT--------------------------------------------------- 484 * * *** consensus_662#0 TTACACATAATAAGTGAAGAATTAAGCAAAAGCTTGTGTAGGGAGAGAAAATACCCTTAA 573 consensus_662#1 ------------------------------------------------------------ consensus_662#0 ACATCATCTAAAAGGTCAGTTTAGATGAGAAGAAATTACACTTGTGCTTCTGTAGCTTTG 633 consensus_662#1 ------------------------------------------------------------ consensus_662#0 TCAAACTACATATTTTTCTTTGGATAATTTCACCATGCTAAAGATATTACCGGCCCTGAG 693 consensus_662#1 ------------------------------------------------------------ consensus_662#0 ATCCCAGAGAGGAACATCTGACCACCGG 721 consensus_662#1 ---------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |