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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_666#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 756 fasta sequence
[CTTTGATAGCGCTCGCTACCGATTACATTAAAAAAAAAAATTCTTTAAATGTGTCTGTGCCTTTTCACCAGCATGAATTCGTTAACCGCCAAGGAAGCCGAGAAGATCTGTGTTCTGTTTTGTCAGGAAGTCGAAGTCTTCGCTGTGGGAAAATGCGACCATCCCGTTTGCTACCGCTGCTCGACAAAAATGAGAGTTCTCTGCGACCAGAAGTACTGCGCCGTCTGCCGCGAGGAGCTCGACAAGGTGGTGTTTGTGGAAAAGCTCCAGCCATTCTCAAGACTGCCACCGCAGCAGTTTCGCTGTGAGAAGAAGTACGACATCTATTTTAGCGATGAGAACATCTATGCCAAGTACAGGTATCTACTATCACCGGTATGCCGCTATTGTCCAGAGCCTAAAGTCTTTTCCAAGTTTGACGAGCTTGAACACCATATGAGGAAACAGCACGAGGTTTTCTCTTGCAAGCTCTGTGCAAATCACCTGAAGGTCTTCTGTCACGAGCGAAAATGGTATAACCGCAAGGAACTGGCACAGCACCGGGCACACGGGGACCCAGATGACACCAGCCACAGAGGACACCCCCTCTGCAAATTTTGTGACGACCGCTATCTTGACAATGACGAGCTGCTTAAACACTTGCGCAGGGACCACTACTTCTGCCACTTCTGCGATGCAAATGGCTCTCAGGAATACTACCGTGATTATCAGTACCTCACTGAGCACTTCAGGGACCGTCACTATCTGCGCGAGGAA]
[+] EMBL CA588356 [CTTTGATAGCGCTCGCTACCGATTACATTAAAAAAAAAAATTCTTTAAATGTGTCTGTGCCTTTTCACCAGCATGAATTCGTTAACCGCCAAGGAAGCCGAGAAGATCTGTGTTCTGTTTTGTCAGGAAGTCGAAGTCTTCGCTGTGGGAAAATGCGACCATCCCGTTTGCTACCGCTGCTCGACAAAAATGAGAGTTCTCTGCGACCAGAAGTACTGCGCCGTCTGCCGCGAGGAGCTCGACAAGGTGGTGTTTGTGGAAAAGCTCCAGCCATTCTCAAGACTGCCACCGCAGCAGTTTCGCTGTGAGAAGAAGTACGACATCTATTTTAGCGATGAGAACATCTATGCCAAGTACAGGTATCTACTATCACCGGTATGCCGCTATTGTCCAGAGCCTAAAGTCTTTTCCAAGTTTGACGAGCTTGAACACCATATGAGGAAACAGCACGAGGTTTTCTCTTGCAAGCTCTGTGCAAATCACCTGAAGGTCTTCTGTCACGAGCGAAAATGGTATAACCGCAAGGAACTGGCACAGCACCGGGCACACGGGGACCCAGATGACACCAGCCACAGAGGACACCCCCTCTGCAAATTTTGTGACGACCGCTATCTTGACAATGACGAGCTGCTTAAACACTTGCGCAGGGACCACTACTTCTGCCACTTCTGCGATGCAAATGGCTCTCAGGAATACTACCGTGATTATCAGTACCTCACTGAGCACTTCAGGGACCGTCACTATCTGCGCGAGGAA]
consensusID : consensus_666#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 387 fasta sequence
[ATGTTGGCTATCCCTTCCCATACTCGTGGTGTTTGTGGAAAAGCTCCAGCCATTCTCAAGACTGCCACCGCAGCAGTTTCGCTGTGAGAAGAAGTACGACATCTATTTTAGCGATGAGAACATCTATGCCAAGTACAGGTATCTACTATCACCGGTATGCCGCTATTGTCCAGAGCCTAAAGTCTTTTCCAAGTTTGACGAGCTTGAACACCATATGAGGAAACAGCACGAGGTTTTCTCTTGCAAGCTCTGTGCAAATCACCTGAAGGTCTTCTGTCACGAGCGAAAATGGTATAACCGCAAGGAACTGGCACAGCACCGGGCACACGGGGACCCAGATGACACCAGCCACAGAGGACACCCCCTCTGCAAATTTTGCGACGACCG]
[+] EMBL FR0060488 [ATGTTGGCTATCCCTTCCCATACTCGTGGTGTTTGTGGAAAAGCTCCAGCCATTCTCAAGACTGCCACCGCAGCAGTTTCGCTGTGAGAAGAAGTACGACATCTATTTTAGCGATGAGAACATCTATGCCAAGTACAGGTATCTACTATCACCGGTATGCCGCTATTGTCCAGAGCCTAAAGTCTTTTCCAAGTTTGACGAGCTTGAACACCATATGAGGAAACAGCACGAGGTTTTCTCTTGCAAGCTCTGTGCAAATCACCTGAAGGTCTTCTGTCACGAGCGAAAATGGTATAACCGCAAGGAACTGGCACAGCACCGGGCACACGGGGACCCAGATGACACCAGCCACAGAGGACACCCCCTCTGCAAATTTTGCGACGACCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_666#0 CTTTGATAGCGCTCGCTACCGATTACATTAAAAAAAAAAATTCTTTAAATGTGTCTGTGC 60
consensus_666#1 ------------------------------------------------------------
consensus_666#0 CTTTTCACCAGCATGAATTCGTTAACCGCCAAGGAAGCCGAGAAGATCTGTGTTCTGTTT 120
consensus_666#1 ------------------------------------------------------------
consensus_666#0 TGTCAGGAAGTCGAAGTCTTCGCTGTGGGAAAATGCGACCATCCCGTTTGCTACCGCTGC 180
consensus_666#1 ------------------------------------------------------------
consensus_666#0 TCGACAAAAATGAGAGTTCTCTGCGACCAGAAGTACTGCGCCGTCTGCCGCGAGGAGCTC 240
consensus_666#1 -------------------------------------ATGTTGGCTATCCCT----TCCC 19
* * ** * * * *
consensus_666#0 GACAAGGTGGTGTTTGTGGAAAAGCTCCAGCCATTCTCAAGACTGCCACCGCAGCAGTTT 300
consensus_666#1 ATACTCGTGGTGTTTGTGGAAAAGCTCCAGCCATTCTCAAGACTGCCACCGCAGCAGTTT 79
******************************************************
consensus_666#0 CGCTGTGAGAAGAAGTACGACATCTATTTTAGCGATGAGAACATCTATGCCAAGTACAGG 360
consensus_666#1 CGCTGTGAGAAGAAGTACGACATCTATTTTAGCGATGAGAACATCTATGCCAAGTACAGG 139
************************************************************
consensus_666#0 TATCTACTATCACCGGTATGCCGCTATTGTCCAGAGCCTAAAGTCTTTTCCAAGTTTGAC 420
consensus_666#1 TATCTACTATCACCGGTATGCCGCTATTGTCCAGAGCCTAAAGTCTTTTCCAAGTTTGAC 199
************************************************************
consensus_666#0 GAGCTTGAACACCATATGAGGAAACAGCACGAGGTTTTCTCTTGCAAGCTCTGTGCAAAT 480
consensus_666#1 GAGCTTGAACACCATATGAGGAAACAGCACGAGGTTTTCTCTTGCAAGCTCTGTGCAAAT 259
************************************************************
consensus_666#0 CACCTGAAGGTCTTCTGTCACGAGCGAAAATGGTATAACCGCAAGGAACTGGCACAGCAC 540
consensus_666#1 CACCTGAAGGTCTTCTGTCACGAGCGAAAATGGTATAACCGCAAGGAACTGGCACAGCAC 319
************************************************************
consensus_666#0 CGGGCACACGGGGACCCAGATGACACCAGCCACAGAGGACACCCCCTCTGCAAATTTTGT 600
consensus_666#1 CGGGCACACGGGGACCCAGATGACACCAGCCACAGAGGACACCCCCTCTGCAAATTTTGC 379
***********************************************************
consensus_666#0 GACGACCGCTATCTTGACAATGACGAGCTGCTTAAACACTTGCGCAGGGACCACTACTTC 660
consensus_666#1 GACGACCG---------------------------------------------------- 387
********
consensus_666#0 TGCCACTTCTGCGATGCAAATGGCTCTCAGGAATACTACCGTGATTATCAGTACCTCACT 720
consensus_666#1 ------------------------------------------------------------
consensus_666#0 GAGCACTTCAGGGACCGTCACTATCTGCGCGAGGAA 756
consensus_666#1 ------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |