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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_677#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence
[GTCAATGNATGAAGTGATTTTTCTTTACCCATACCTTCTCCCCTAAAAGGAACTGATTTTTTAAACACAATTAAAAAGNAGAAAGGAGNAGATTATTTGTGCATGTCGTTCAACCACTTAATATAGTCTCTCAATTTACAGGTGCCGTGATGGGACAAAGTAAGTCTATTTCCAAATAGAAAGCCCAAAAGAGAGAATATTAACTGGATATTGTTTGATGTTTAGCAAAACAATCACGGAAAACTACACGTAAGATTTAACTCACCGACCACAAATAAAATTTTGCCTGATGTTCGTTTAAACAAACAGGTTTGGTCACTTCGCCATGGAGGGAAATGCCATTGTGAGTAGCAAATCTGAGTGTTGATGCAGTTTCACAGTTAAACTGACTGTTTTTAAGAAGCTCAAATAAAAATTTGTATCAAATGCAGGAACAACAGAGAAAATCTCAGCTTTGTCAAACATTATGAACCTAAAAACACTGACGTCCAACATCTCAGAGTTTTGGTGCATGGACCAGTTGGTGCTGGAAAGTCCAGTTTCATCAACTCTGTTGACACTGTTTTACGACGTAAAATCACTGGCCGAGCTCTCACCGATGGAAATCTGGTTGAAGGCAGCTTCACCAAGAAAGTAAGAAGATCAAAGAATGACTACGAG]
[+] EMBL CA588426 [GTCAATGNATGAAGTGATTTTTCTTTACCCATACCTTCTCCCCTAAAAGGAACTGATTTTTTAAACACAATTAAAAAGNAGAAAGGAGNAGATTATTTGTGCATGTCGTTCAACCACTTAATATAGTCTCTCAATTTACAGGTGCCGTGATGGGACAAAGTAAGTCTATTTCCAAATAGAAAGCCCAAAAGAGAGAATATTAACTGGATATTGTTTGATGTTTAGCAAAACAATCACGGAAAACTACACGTAAGATTTAACTCACCGACCACAAATAAAATTTTGCCTGATGTTCGTTTAAACAAACAGGTTTGGTCACTTCGCCATGGAGGGAAATGCCATTGTGAGTAGCAAATCTGAGTGTTGATGCAGTTTCACAGTTAAACTGACTGTTTTTAAGAAGCTCAAATAAAAATTTGTATCAAATGCAGGAACAACAGAGAAAATCTCAGCTTTGTCAAACATTATGAACCTAAAAACACTGACGTCCAACATCTCAGAGTTTTGGTGCATGGACCAGTTGGTGCTGGAAAGTCCAGTTTCATCAACTCTGTTGACACTGTTTTACGACGTAAAATCACTGGCCGAGCTCTCACCGATGGAAATCTGGTTGAAGGCAGCTTCACCAAGAAAGTAAGAAGATCAAAGAATGACTACGAG]
consensusID : consensus_677#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence
[CTGAAAAGGATTCAAAAGTGAAAGCAAAATTTCACCGAGTTGTACCGTTAAAATCGTTGTGTGGATCAGTCGCCCTTTACAAAGGAATAAAGGTGCCGTGATGGGACAAAGTTTGGTCACTTCGCCATGGAGGGAAATGCCAGCGAACAACAGAGAAAATCTCAGCTTTGTCAAACATTATGAACCTAAAAACACTGACGTCCAACATCTCAGAGTTTTGGTGCATGGACCAGTTGGTGCTGGAAAGTCCAGTTTCATCAACTCTGTTGACACTGTTTTACGACGTAAAATCACTGGCCGAGCTCTCACAGATGGAAATCTGGTTGAAGGCAGCTTCACCAAGAAATACGAAAACTACAGATTCACTCGACAGTCAGATCCAAACAGCCATTATTGCATCTCTATTAATGACATCGTCGGCCTTGAGGAAGGTAGAGGAGCTCATGTTGATGACATCATCCT]
[+] EMBL CA589679 [CTGAAAAGGATTCAAAAGTGAAAGCAAAATTTCACCGAGTTGTACCGTTAAAATCGTTGTGTGGATCAGTCGCCCTTTACAAAGGAATAAAGGTGCCGTGATGGGACAAAGTTTGGTCACTTCGCCATGGAGGGAAATGCCAGCGAACAACAGAGAAAATCTCAGCTTTGTCAAACATTATGAACCTAAAAACACTGACGTCCAACATCTCAGAGTTTTGGTGCATGGACCAGTTGGTGCTGGAAAGTCCAGTTTCATCAACTCTGTTGACACTGTTTTACGACGTAAAATCACTGGCCGAGCTCTCACAGATGGAAATCTGGTTGAAGGCAGCTTCACCAAGAAATACGAAAACTACAGATTCACTCGACAGTCAGATCCAAACAGCCATTATTGCATCTCTATTAATGACATCGTCGGCCTTGAGGAAGGTAGAGGAGCTCATGTTGATGACATCATCCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_677#0 GTCAATGNATGAAGTGATTTTTCTTTACCCATACCTTCTCCCCTAAAAGGAACTGATTTT 60
consensus_677#1 ------------------------------------------------------------
consensus_677#0 TTAAACACAATTAAAAAGNAGAAAGGAGNAGATTATTTGTGCATGTCGTTCAACCACTTA 120
consensus_677#1 ------------------------------------------------------------
consensus_677#0 ATATAGTCTCTCAATTTACAGGTGCCGTGATGGGACAAAGTAAGTCTATTTCCAAATAGA 180
consensus_677#1 ------------------------------------------------------------
consensus_677#0 AAGCCCAAAAGAGAGAATATTAACTGGATATTGTTTGATGTTTAGCAAAACAATCACGGA 240
consensus_677#1 ------------------------------------------------------------
consensus_677#0 AAACTACACGTAAGATTTAACTCACCGACCACAAATAAAATTTTGCCTGATGTTCGTTTA 300
consensus_677#1 ----------------------------------------------CTGAAAAGGATTCA 14
**** ** *
consensus_677#0 AACAAACAGGTTTGGTCACTTCGCCATGGAGGGA-AATGCCATTGTGAGTAGCAAATCTG 359
consensus_677#1 AAAGTGAAAGCAAAATTTCACCGAGTTGTACCGTTAAAATCGTTGTGTGGATCAG---TC 71
** * * * * ** ** * * ** * ***** * * ** *
consensus_677#0 AGTGTTGATGCAGTTTCACAGTTAAACTGACTGTTTTTAAGAAGCTCAAATAAAAATTTG 419
consensus_677#1 GCCCTTTACAAAGGAATAAAGGTGCCGTGATGGGACAAAGTTTGGTCACTTCGCCATGGA 131
** * ** * ** * *** * * * *** * **
consensus_677#0 TATCAAATGCAG-GAACAACAGAGAAAATCTCAGCTTTGTCAAACATTATGAACCTAAAA 478
consensus_677#1 GGGAAATGCCAGCGAACAACAGAGAAAATCTCAGCTTTGTCAAACATTATGAACCTAAAA 191
** *** ***********************************************
consensus_677#0 ACACTGACGTCCAACATCTCAGAGTTTTGGTGCATGGACCAGTTGGTGCTGGAAAGTCCA 538
consensus_677#1 ACACTGACGTCCAACATCTCAGAGTTTTGGTGCATGGACCAGTTGGTGCTGGAAAGTCCA 251
************************************************************
consensus_677#0 GTTTCATCAACTCTGTTGACACTGTTTTACGACGTAAAATCACTGGCCGAGCTCTCACCG 598
consensus_677#1 GTTTCATCAACTCTGTTGACACTGTTTTACGACGTAAAATCACTGGCCGAGCTCTCACAG 311
********************************************************** *
consensus_677#0 ATGGAAATCTGGTTGAAGGCAGCTTCACCAAGAAAGTAAGAAGATCAAAGAATGACTACG 658
consensus_677#1 ATGGAAATCTGGTTGAAGGCAGCTTCACCAAGAAA-TACGAAAACTACAGATTCACT-CG 369
*********************************** ** *** * * *** * *** **
consensus_677#0 AG---------------------------------------------------------- 660
consensus_677#1 ACAGTCAGATCCAAACAGCCATTATTGCATCTCTATTAATGACATCGTCGGCCTTGAGGA 429
*
consensus_677#0 ---------------------------------
consensus_677#1 AGGTAGAGGAGCTCATGTTGATGACATCATCCT 462
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |