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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence
[ATGCTCGCTGGGCTAACTAACCAACAATCAGCCCTTCGATCTACATTGAAACCTGATTCAAAGGTCGAATAAGCACTATTACCGAAGTGCCAAAATGACAGCCGCACCTTACAACTACTCCTACATCTTCAAGTACATCATCATCGGGGACATGGGAGTGGGGAAATCCTGTCTGCTCCATCAGTTCACAGAGAAAAAATGTCATCATTCTGATTGGAAACAAGGCCGACCTGGAGGCCCAGAGAGACGTAACTTACGAGGAGGCCAAACAGTTCGCTGAGGAGAACGGTTTACTGTTTCTAGAGGCCAGCGCTAAAACAGGAGAAAACGTGGAAGAAGCCTTCCTGGAAGCAGCAAAGAGGATCTATCAGAACATCCAGGATGGCAGCTTAGACCTGAATGCTGCAGAGTCGGGAGTCCAGCACAAACCATCGGCACCTCAGGGGGGGCGACTCAATGCTGACAACCAAGCACCCAAAGAGGGTTGCAGCTGCTAACCTCAGCCAGCAGCTCCAGATCAGCCCAGATGAAGGACTCAGACAAATGCAGAGAACTCAGCGTCCCGAGCGCTCCAAAGCTCTCAGACCATATAAATGTAAACATTTGCAGACCTCAGAGGTCAAGTGTCCACATA]
[+] EMBL BU807879 [ATGCTCGCTGGGCTAACTAACCAACAATCAGCCCTTCGATCTACATTGAAACCTGATTCAAAGGTCGAATAAGCACTATTACCGAAGTGCCAAAATGACAGCCGCACCTTACAACTACTCCTACATCTTCAAGTACATCATCATCGGGGACATGGGAGTGGGGAAATCCTGTCTGCTCCATCAGTTCACAGAGAAAAAATGTCATCATTCTGATTGGAAACAAGGCCGACCTGGAGGCCCAGAGAGACGTAACTTACGAGGAGGCCAAACAGTTCGCTGAGGAGAACGGTTTACTGTTTCTAGAGGCCAGCGCTAAAACAGGAGAAAACGTGGAAGAAGCCTTCCTGGAAGCAGCAAAGAGGATCTATCAGAACATCCAGGATGGCAGCTTAGACCTGAATGCTGCAGAGTCGGGAGTCCAGCACAAACCATCGGCACCTCAGGGGGGGCGACTCAATGCTGACAACCAAGCACCCAAAGAGGGTTGCAGCTGCTAACCTCAGCCAGCAGCTCCAGATCAGCCCAGATGAAGGACTCAGACAAATGCAGAGAACTCAGCGTCCCGAGCGCTCCAAAGCTCTCAGACCATATAAATGTAAACATTTGCAGACCTCAGAGGTCAAGTGTCCACATA]
consensusID : consensus_7#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence
[CGGAAGAGGAGAGAGATTTCCTGGATGCTCGCTGGGCTAACTAACCAACAATCAGCCCTTCGATCTACATTGAAACCTGATTCAAAGGTCGAATAAGCACTATTACCGAAGTGCCAAAATGACAGCCGCACCTTACAACTACTCCTACATCTTCAAGTACATCATCATCGGTGAGTGACAAACACAGGAACCGAAATAAGGAAATGACATGCTGCATGTTAAATAATTATGTGAGCGCTGTTCACGAAGGAAGAGCAGAACTGTCTCTTAGTGTAAGGCACCGCCCCGCGACCACAAGTGACACATAACAAACACACCCTCGAGTTCGTCGATACGATGTGAGACAACGAAGAAATGGACGGGTTATACTGGGACAGAGACAAAATGACTGATTATATTGGAACAGAGAGGATAAATGGACTAGTTACACAGAGACAGAAGGTATAAATGGACTGATTATACTGGGACATAGGGATCAAATCAAACAAGTTGGACATTTTGGAGTACTACAAAGTTACTGGTTTAATGGAGACAGTTGGGAGTGTTTGTGTTGACTCTGATCTCTGCTCACCTGTCCAGGGGACATGGGAGTGGGGAAATCCTGTCTGCTCCATCAGTT]
[+] EMBL CA590786 [CGGAAGAGGAGAGAGATTTCCTGGATGCTCGCTGGGCTAACTAACCAACAATCAGCCCTTCGATCTACATTGAAACCTGATTCAAAGGTCGAATAAGCACTATTACCGAAGTGCCAAAATGACAGCCGCACCTTACAACTACTCCTACATCTTCAAGTACATCATCATCGGTGAGTGACAAACACAGGAACCGAAATAAGGAAATGACATGCTGCATGTTAAATAATTATGTGAGCGCTGTTCACGAAGGAAGAGCAGAACTGTCTCTTAGTGTAAGGCACCGCCCCGCGACCACAAGTGACACATAACAAACACACCCTCGAGTTCGTCGATACGATGTGAGACAACGAAGAAATGGACGGGTTATACTGGGACAGAGACAAAATGACTGATTATATTGGAACAGAGAGGATAAATGGACTAGTTACACAGAGACAGAAGGTATAAATGGACTGATTATACTGGGACATAGGGATCAAATCAAACAAGTTGGACATTTTGGAGTACTACAAAGTTACTGGTTTAATGGAGACAGTTGGGAGTGTTTGTGTTGACTCTGATCTCTGCTCACCTGTCCAGGGGACATGGGAGTGGGGAAATCCTGTCTGCTCCATCAGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7#0 ------------------------ATGCTCGCTGGGCTAACTAACCAACAATCAGCCCTT 36
consensus_7#1 CGGAAGAGGAGAGAGATTTCCTGGATGCTCGCTGGGCTAACTAACCAACAATCAGCCCTT 60
************************************
consensus_7#0 CGATCTACATTGAAACCTGATTCAAAGGTCGAATAAGCACTATTACCGAAGTGCCAAAAT 96
consensus_7#1 CGATCTACATTGAAACCTGATTCAAAGGTCGAATAAGCACTATTACCGAAGTGCCAAAAT 120
************************************************************
consensus_7#0 GACAGCCGCACCTTACAACTACTCCTACATCTTCAAGTACATCATCATCGGGGACATGGG 156
consensus_7#1 GACAGCCGCACCTTACAACTACTCCTACATCTTCAAGTACATCATCATCGGTGAGTGACA 180
*************************************************** **
consensus_7#0 AGTGGGGAAATCCTGTCTGCTCCATCA------GTTCACAGAGAAAAAATGTCATCATTC 210
consensus_7#1 AACACAGGAACCGAAATAAGGAAATGACATGCTGCATGTTAAATAATTATGTGAGCGCTG 240
* * ** * ** * * * ** **** * * *
consensus_7#0 TGATTGGAAACAAGGCCGACCTGGAGGCCCAGAGAGACGTAACTTACGAGGAGGCCAAAC 270
consensus_7#1 TTCACGAAGGAAGAGCAGAACTGTCT-CTTAGTGTAAGGCACCGCCCCGCGACCACAAGT 299
* * * * ** ** *** * ** * * * * * * ** ***
consensus_7#0 AGTTCGCTGAGGAGAACGGTTTACTGTTTCTAGAGGCCAGCGCTAAAACAGGAGAAAACG 330
consensus_7#1 GACACA-TAACAAACACACCCTCGAGTTCGTCGATACGAT--GTGAGACAAC-GAAGAAA 355
* * * * ** * *** * ** * * * * *** *** *
consensus_7#0 TGGAAGAAGCCTTCCTGGAAGCAGCAAAGAGGATCTATCAGAACATC-CAGGATGGCAGC 389
consensus_7#1 TGGACGGGTTATACTGGGACAGAGACAAAATGACTGATTATATTGGAACAGAGAGGATAA 415
**** * * * *** ** ** * ** ** * * *** **
consensus_7#0 TTAGACCTGAATGCTGCAGAGTCGGGAGTCCAGCACAAACCATCGGCACCTCAGGGGGGG 449
consensus_7#1 ATGGACT--AGTTACACAGAGACAGAAGGTATAAATGGACTGATTATAC--TGGGACATA 471
* *** * * ***** * * ** * ** ** **
consensus_7#0 CGACTCAATGCTGACAACCAAGCACCCAAAGAGGGTTGCA--GCTGCTAACCTCAGCCAG 507
consensus_7#1 GGGATCAAATCAAACAAGTTGGACATTTTGGAGTACTACAAAGTTACTGGTTTAATGGAG 531
* **** * **** * *** * ** * * ** * * **
consensus_7#0 CAGCTCCAGATCAGCCCAGATGAAGGACTCAGACAAATGCAGAGAACTCAGC-GTCCCGA 566
consensus_7#1 ACAGTTGGGAGTGTTTGTGTTGA----CTCTGATCTCTGC-------TCACCTGTCCAGG 580
* ** * *** *** ** *** *** * **** *
consensus_7#0 GCGCTCCAAAGCTCTCAGACCATATAAATGTAAACATTTGCAGACCTCAGAGGTCAAGTG 626
consensus_7#1 GGACATGGGAGTGGGGAAATCCTGTCTGCTCCATCAGTT--------------------- 619
* * ** * * * * * * ** **
consensus_7#0 TCCACATA 634
consensus_7#1 --------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |