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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_709#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence
[TCGATCNAAGAGGGCACATAATCGGACCCTCGGCCTTTATTGTGCTTAGACTATAAGCGTTGTGTACGTGGTTGGATCGGATCTTCTTATAAATTCCAACAGATGTGCACCTCCAGGCACTGACTTCTTCTCTGTCAAATGCACACCCAATGTCCAGTACATCATCAGCCCCCCACCCCAGGAGACATCCCACCTCTCTCCACTCCCTCTTAGTGGAGACTCAATGATAATCGTCAGGATGAGCCATGCCAGTGATACAGAAAATGAAAGCAAGCTGTCTGTAAGGTACTATGGGTCTGATAAAAAAGTACTGGGTACAGCGCGCTTGTACTTAACAGCTCTTGAGATCTCCCTGGATGTAGACGCTGACAGAAATGGGGTTGTGGAGAGGAATAACCCCAATAAGGGGTCATGGAAATGGGGTCCAAATGGGCATGGTGCTGTCCTATTAGTCAATTGTGACTGTGAGCGGACATACTGGAAGACTCCAGACAGCGAGAAGACATATATTTCCAAAGTGTCTGGTTAGATATTTCTTTTCCTTGATTCATTTTGTCTCTCACTATTTGGGGAAAAAAGACTCACAAGATTTTAAGGTCACATATTATTAACATGATTGTGGATGTGCAGATTTAAAGGATATGTCTCT]
[+] EMBL CA588558 [TCGATCNAAGAGGGCACATAATCGGACCCTCGGCCTTTATTGTGCTTAGACTATAAGCGTTGTGTACGTGGTTGGATCGGATCTTCTTATAAATTCCAACAGATGTGCACCTCCAGGCACTGACTTCTTCTCTGTCAAATGCACACCCAATGTCCAGTACATCATCAGCCCCCCACCCCAGGAGACATCCCACCTCTCTCCACTCCCTCTTAGTGGAGACTCAATGATAATCGTCAGGATGAGCCATGCCAGTGATACAGAAAATGAAAGCAAGCTGTCTGTAAGGTACTATGGGTCTGATAAAAAAGTACTGGGTACAGCGCGCTTGTACTTAACAGCTCTTGAGATCTCCCTGGATGTAGACGCTGACAGAAATGGGGTTGTGGAGAGGAATAACCCCAATAAGGGGTCATGGAAATGGGGTCCAAATGGGCATGGTGCTGTCCTATTAGTCAATTGTGACTGTGAGCGGACATACTGGAAGACTCCAGACAGCGAGAAGACATATATTTCCAAAGTGTCTGGTTAGATATTTCTTTTCCTTGATTCATTTTGTCTCTCACTATTTGGGGAAAAAAGACTCACAAGATTTTAAGGTCACATATTATTAACATGATTGTGGATGTGCAGATTTAAAGGATATGTCTCT]
consensusID : consensus_709#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence
[CGTGATGGCACATAATCGGACCCTCGGCCTTTATTGTGACCAGACTATAAGCGTTGTGTACGTGGTTGGATCGGATCTTCTTATAAATTCCAACAGATGTGCACCTCCAGGCACTGACTTCTTCTCTGTCAAATGCACACCCAATGTCCAGTACATCATCAGCCCCCCACCCCAGGAGACATCCCACCTCTCTCCACTCCCTCTTAGTGGAGACTCAATGATAATCGTCAGGATGATCCATGCCAGTGATACAGAAAATGAAAGCAAGCTGTCTGTAAGGTACTATGGGTCTGATAAAAAAGTACTGGGTACAGCGCGCTTGTACTTAACAGCTCTTGAGATCTCCCTGGATGTTGACGCTGACAGAGATGGGGTTGTGGAGAGGAATAACCCCAATAAGGGGTCATGGAAATGGGGTCCAAATGGGCATGGTGCTGTCCTATTAGTCAATTGTGACTGTGAGCGGACATACTGGAAGACTCCAGACAGCGAGAAGACATATATTTCCAAAGTGTCTGATTTAAAGGATATGTCTCTCATGGTGCTGCGGACCAGAGGTCCCGCCAAGCTCCCAAACGACTACAAACTCACTCTGCACATTTCTCAGAGT]
[+] EMBL CA589487 [CGTGATGGCACATAATCGGACCCTCGGCCTTTATTGTGACCAGACTATAAGCGTTGTGTACGTGGTTGGATCGGATCTTCTTATAAATTCCAACAGATGTGCACCTCCAGGCACTGACTTCTTCTCTGTCAAATGCACACCCAATGTCCAGTACATCATCAGCCCCCCACCCCAGGAGACATCCCACCTCTCTCCACTCCCTCTTAGTGGAGACTCAATGATAATCGTCAGGATGATCCATGCCAGTGATACAGAAAATGAAAGCAAGCTGTCTGTAAGGTACTATGGGTCTGATAAAAAAGTACTGGGTACAGCGCGCTTGTACTTAACAGCTCTTGAGATCTCCCTGGATGTTGACGCTGACAGAGATGGGGTTGTGGAGAGGAATAACCCCAATAAGGGGTCATGGAAATGGGGTCCAAATGGGCATGGTGCTGTCCTATTAGTCAATTGTGACTGTGAGCGGACATACTGGAAGACTCCAGACAGCGAGAAGACATATATTTCCAAAGTGTCTGATTTAAAGGATATGTCTCTCATGGTGCTGCGGACCAGAGGTCCCGCCAAGCTCCCAAACGACTACAAACTCACTCTGCACATTTCTCAGAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_709#0 TCGATCNAAGAGGGCACATAATCGGACCCTCGGCCTTTATTGTGCTTAGACTATAAGCGT 60
consensus_709#1 ------CGTGATGGCACATAATCGGACCCTCGGCCTTTATTGTGACCAGACTATAAGCGT 54
** ******************************** *************
consensus_709#0 TGTGTACGTGGTTGGATCGGATCTTCTTATAAATTCCAACAGATGTGCACCTCCAGGCAC 120
consensus_709#1 TGTGTACGTGGTTGGATCGGATCTTCTTATAAATTCCAACAGATGTGCACCTCCAGGCAC 114
************************************************************
consensus_709#0 TGACTTCTTCTCTGTCAAATGCACACCCAATGTCCAGTACATCATCAGCCCCCCACCCCA 180
consensus_709#1 TGACTTCTTCTCTGTCAAATGCACACCCAATGTCCAGTACATCATCAGCCCCCCACCCCA 174
************************************************************
consensus_709#0 GGAGACATCCCACCTCTCTCCACTCCCTCTTAGTGGAGACTCAATGATAATCGTCAGGAT 240
consensus_709#1 GGAGACATCCCACCTCTCTCCACTCCCTCTTAGTGGAGACTCAATGATAATCGTCAGGAT 234
************************************************************
consensus_709#0 GAGCCATGCCAGTGATACAGAAAATGAAAGCAAGCTGTCTGTAAGGTACTATGGGTCTGA 300
consensus_709#1 GATCCATGCCAGTGATACAGAAAATGAAAGCAAGCTGTCTGTAAGGTACTATGGGTCTGA 294
** *********************************************************
consensus_709#0 TAAAAAAGTACTGGGTACAGCGCGCTTGTACTTAACAGCTCTTGAGATCTCCCTGGATGT 360
consensus_709#1 TAAAAAAGTACTGGGTACAGCGCGCTTGTACTTAACAGCTCTTGAGATCTCCCTGGATGT 354
************************************************************
consensus_709#0 AGACGCTGACAGAAATGGGGTTGTGGAGAGGAATAACCCCAATAAGGGGTCATGGAAATG 420
consensus_709#1 TGACGCTGACAGAGATGGGGTTGTGGAGAGGAATAACCCCAATAAGGGGTCATGGAAATG 414
************ **********************************************
consensus_709#0 GGGTCCAAATGGGCATGGTGCTGTCCTATTAGTCAATTGTGACTGTGAGCGGACATACTG 480
consensus_709#1 GGGTCCAAATGGGCATGGTGCTGTCCTATTAGTCAATTGTGACTGTGAGCGGACATACTG 474
************************************************************
consensus_709#0 GAAGACTCCAGACAGCGAGAAGACATATATTTCCAAAGTGTCTGGTTAGATATTTCTTTT 540
consensus_709#1 GAAGACTCCAGACAGCGAGAAGACATATATTTCCAAAGTGTCTGATTTAAAGGATATGTC 534
******************************************** ** * * * *
consensus_709#0 CCTTGATTCATTTTGTCTCTCACTATTTGGGGAAAAAAGACTCACAAGATTTTAAGGTCA 600
consensus_709#1 TCTCA--TGGTGCTGCGGACCAGAGGTCCCGCCAAGC--TCCCAAACGACTACAAACTCA 590
** * * ** ** * * ** * ** * ** * ** ***
consensus_709#0 CATATTATTAACATGATTGTGGATGTGCAGATTTAAAGGATATGTCTCT 649
consensus_709#1 C----TCTGCACATTTCTCAGAGT------------------------- 610
* * * **** * * *
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |