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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_721#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 795 fasta sequence
[TCGTTCAAGAGCAATTTTTCGCTTGTGATTCATGGCGGTGGACGTGTAATAAATATTGATAACTTTGATTTCTTCTTACTATTGATTCTATTTTTCATAATGGAGGAGGTAGACGTTGAGCCAGTAATCACCAACATTCCAGCCAGTGCTGGGAAGCATTTGGGATTTACGTGGGGACCTGGCGATATCCTTGTGTATGAAACCCTGTACAAAGCATCAGGATTTGTGGGTTCAGGATCTCCCTTCATTCATGAAATCAGGAAGGACGAGGACATTTATTCACCAATTTTACGCAAACTTTTCAATGAATCACATCACATCTTTGTTGGGCTGCAAACAGTTTTTGAGGAACTTCCCAGCAAGAACAAAAAAGCTCAGTTTGTCAGCGTCAGTAAAAACTACAGATCTGTTATTCGAGCCTGTATGGAAGAGCTTCAACAAGTTGCTGTTTCCACAAAATCACCAGACATTGCAACACAATATGGAAATCAGGTGTCCATTCTGTTGGCCATAGAACTGATCTGGAATCTGTGTGAAGTACTTTTCATTGATGCTGCTCCTGCCGGGTCTGTCCTCCTCCATCTGCTGGACTGGGTAAGGTTACACAAAGCTGATGTGGATGAAAAGGCCAAAGAAGTGCTGCAAAGTGAGAGCCCAGCTGAGCATCGTGACTACTGGGATGTGGTTGTGAGTTACATCCTGCAGGGCAGGTTGGAGGAGGCCAGGCAGATGCTAATGAAGCAAGCTGTTCTACATCCCGCAGCAAGGAACATGTACAAGCTGATGGACAGTCTG]
[+] EMBL CA588670 [TCGTTCAAGAGCAATTTTTCGCTTGTGATTCATGGCGGTGGACGTGTAATAAATATTGATAACTTTGATTTCTTCTTACTATTGATTCTATTTTTCATAATGGAGGAGGTAGACGTTGAGCCAGTAATCACCAACATTCCAGCCAGTGCTGGGAAGCATTTGGGATTTACGTGGGGACCTGGCGATATCCTTGTGTATGAAACCCTGTACAAAGCATCAGGATTTGTGGGTTCAGGATCTCCCTTCATTCATGAAATCAGGAAGGACGAGGACATTTATTCACCAATTTTACGCAAACTTTTCAATGAATCACATCACATCTTTGTTGGGCTGCAAACAGTTTTTGAGGAACTTCCCAGCAAGAACAAAAAAGCTCAGTTTGTCAGCGTCAGTAAAAACTACAGATCTGTTATTCGAGCCTGTATGGAAGAGCTTCAACAAGTTGCTGTTTCCACAAAATCACCAGACATTGCAACACAATATGGAAATCAGGTGTCCATTCTGTTGGCCATAGAACTGATCTGGAATCTGTGTGAAGTACTTTTCATTGATGCTGCTCCTGCCGGGTCTGTCCTCCTCCATCTGCTGGACTGGGTAAGGTTACACAAAGCTGATGTGGATGAAAAGGCCAAAGAAGTGCTGCAAAGTGAGAGCCCAGCTGAGCATCGTGACTACTGGGATGTGGTTGTGAGTTACATCCTGCAGGGCAGGTTGGAGGAGGCCAGGCAGATGCTAATGAAGCAAGCTGTTCTACATCCCGCAGCAAGGAACATGTACAAGCTGATGGACAGTCTG]
consensusID : consensus_721#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 743 fasta sequence
[TCCGGTCAATGNGAAAGCGCGGATGCAATTTTTCGCTTGTGATTACGTATGAAGGAAGTGTCTTAAATATTGATAACTTTGATTTCTTCTTACTATTGATTCTATTTTTCATAATGGAGGATGTAGACGTTGAGCCAGTAATCACCAACATTCCAGCCAGTGCTGGGAAGCATTTGGGATTTACGTGGGGACCTGGCGATATCCTTGTGTATGAAACCCTGTACAAAGCATCAGGATTTGTGGGTTCAGGATCTCCCTTCATTCATGAAATCAGGAAGGACGAGGACATTTATTCACCAATTTTACGCAAACTTTTCAATGAATCACATCACATCTTTGTTGGGTTGTTAACAGTTGGAGAGGAACTTCCCAGCAAGAACAAAAAAGCTCAGTTTGTCAGCGTCAGTAAAAACTACAGATCTGTTATTCGAGCCTGTATGGAAGAGCTTCAACAAGTTGCTGTTTCCACAAAATCACCAGACATTGCAACACAATATGGAAATCAGGTGTCCATTCTGTTGGCCATAGAACTGATCTGGAATCTGTGTGAAGTACTTTTCATTGATGCTGCTCCTGCCGGGTCTGTCCTCCTCCATCTGGTGGACTGGGTAAGGTTACACAAAGGTGATGTGGATGAAAAGGCCAAAGAAGTGCTGCAAAGTGAGAGCCCAGCTGAGCATTGTGACTAGTGGGATGTGGTTGGGAGGTACATCCTGCAGGGGAGGTTGGAGGAGGGCAGGCAG]
[+] EMBL CA588606 [TCCGGTCAATGNGAAAGCGCGGATGCAATTTTTCGCTTGTGATTACGTATGAAGGAAGTGTCTTAAATATTGATAACTTTGATTTCTTCTTACTATTGATTCTATTTTTCATAATGGAGGATGTAGACGTTGAGCCAGTAATCACCAACATTCCAGCCAGTGCTGGGAAGCATTTGGGATTTACGTGGGGACCTGGCGATATCCTTGTGTATGAAACCCTGTACAAAGCATCAGGATTTGTGGGTTCAGGATCTCCCTTCATTCATGAAATCAGGAAGGACGAGGACATTTATTCACCAATTTTACGCAAACTTTTCAATGAATCACATCACATCTTTGTTGGGTTGTTAACAGTTGGAGAGGAACTTCCCAGCAAGAACAAAAAAGCTCAGTTTGTCAGCGTCAGTAAAAACTACAGATCTGTTATTCGAGCCTGTATGGAAGAGCTTCAACAAGTTGCTGTTTCCACAAAATCACCAGACATTGCAACACAATATGGAAATCAGGTGTCCATTCTGTTGGCCATAGAACTGATCTGGAATCTGTGTGAAGTACTTTTCATTGATGCTGCTCCTGCCGGGTCTGTCCTCCTCCATCTGGTGGACTGGGTAAGGTTACACAAAGGTGATGTGGATGAAAAGGCCAAAGAAGTGCTGCAAAGTGAGAGCCCAGCTGAGCATTGTGACTAGTGGGATGTGGTTGGGAGGTACATCCTGCAGGGGAGGTTGGAGGAGGGCAGGCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_721#0 --------------TCGTTCAAGAGCAATTTTTCGCTTGTGATTCATGGCGGTGGACGTG 46
consensus_721#1 TCCGGTCAATGNGAAAGCGCGGATGCAATTTTTCGCTTGTGATTACGTATGAAGGAAGTG 60
* * ******************** * *** ***
consensus_721#0 TAATAAATATTGATAACTTTGATTTCTTCTTACTATTGATTCTATTTTTCATAATGGAGG 106
consensus_721#1 TCTTAAATATTGATAACTTTGATTTCTTCTTACTATTGATTCTATTTTTCATAATGGAGG 120
* *********************************************************
consensus_721#0 AGGTAGACGTTGAGCCAGTAATCACCAACATTCCAGCCAGTGCTGGGAAGCATTTGGGAT 166
consensus_721#1 ATGTAGACGTTGAGCCAGTAATCACCAACATTCCAGCCAGTGCTGGGAAGCATTTGGGAT 180
* **********************************************************
consensus_721#0 TTACGTGGGGACCTGGCGATATCCTTGTGTATGAAACCCTGTACAAAGCATCAGGATTTG 226
consensus_721#1 TTACGTGGGGACCTGGCGATATCCTTGTGTATGAAACCCTGTACAAAGCATCAGGATTTG 240
************************************************************
consensus_721#0 TGGGTTCAGGATCTCCCTTCATTCATGAAATCAGGAAGGACGAGGACATTTATTCACCAA 286
consensus_721#1 TGGGTTCAGGATCTCCCTTCATTCATGAAATCAGGAAGGACGAGGACATTTATTCACCAA 300
************************************************************
consensus_721#0 TTTTACGCAAACTTTTCAATGAATCACATCACATCTTTGTTGGGCTGCAAACAGTTTTTG 346
consensus_721#1 TTTTACGCAAACTTTTCAATGAATCACATCACATCTTTGTTGGGTTGTTAACAGTTGGAG 360
******************************************** ** ******* *
consensus_721#0 AGGAACTTCCCAGCAAGAACAAAAAAGCTCAGTTTGTCAGCGTCAGTAAAAACTACAGAT 406
consensus_721#1 AGGAACTTCCCAGCAAGAACAAAAAAGCTCAGTTTGTCAGCGTCAGTAAAAACTACAGAT 420
************************************************************
consensus_721#0 CTGTTATTCGAGCCTGTATGGAAGAGCTTCAACAAGTTGCTGTTTCCACAAAATCACCAG 466
consensus_721#1 CTGTTATTCGAGCCTGTATGGAAGAGCTTCAACAAGTTGCTGTTTCCACAAAATCACCAG 480
************************************************************
consensus_721#0 ACATTGCAACACAATATGGAAATCAGGTGTCCATTCTGTTGGCCATAGAACTGATCTGGA 526
consensus_721#1 ACATTGCAACACAATATGGAAATCAGGTGTCCATTCTGTTGGCCATAGAACTGATCTGGA 540
************************************************************
consensus_721#0 ATCTGTGTGAAGTACTTTTCATTGATGCTGCTCCTGCCGGGTCTGTCCTCCTCCATCTGC 586
consensus_721#1 ATCTGTGTGAAGTACTTTTCATTGATGCTGCTCCTGCCGGGTCTGTCCTCCTCCATCTGG 600
***********************************************************
consensus_721#0 TGGACTGGGTAAGGTTACACAAAGCTGATGTGGATGAAAAGGCCAAAGAAGTGCTGCAAA 646
consensus_721#1 TGGACTGGGTAAGGTTACACAAAGGTGATGTGGATGAAAAGGCCAAAGAAGTGCTGCAAA 660
************************ ***********************************
consensus_721#0 GTGAGAGCCCAGCTGAGCATCGTGACTACTGGGATGTGGTTGTGAGTTACATCCTGCAGG 706
consensus_721#1 GTGAGAGCCCAGCTGAGCATTGTGACTAGTGGGATGTGGTTGGGAGGTACATCCTGCAGG 720
******************** ******* ************* *** *************
consensus_721#0 GCAGGTTGGAGGAGGCCAGGCAGATGCTAATGAAGCAAGCTGTTCTACATCCCGCAGCAA 766
consensus_721#1 GGAGGTTGGAGGAGGGCAGGCAG------------------------------------- 743
* ************* *******
consensus_721#0 GGAACATGTACAAGCTGATGGACAGTCTG 795
consensus_721#1 -----------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |