These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_721#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 795 fasta sequence [TCGTTCAAGAGCAATTTTTCGCTTGTGATTCATGGCGGTGGACGTGTAATAAATATTGATAACTTTGATTTCTTCTTACTATTGATTCTATTTTTCATAATGGAGGAGGTAGACGTTGAGCCAGTAATCACCAACATTCCAGCCAGTGCTGGGAAGCATTTGGGATTTACGTGGGGACCTGGCGATATCCTTGTGTATGAAACCCTGTACAAAGCATCAGGATTTGTGGGTTCAGGATCTCCCTTCATTCATGAAATCAGGAAGGACGAGGACATTTATTCACCAATTTTACGCAAACTTTTCAATGAATCACATCACATCTTTGTTGGGCTGCAAACAGTTTTTGAGGAACTTCCCAGCAAGAACAAAAAAGCTCAGTTTGTCAGCGTCAGTAAAAACTACAGATCTGTTATTCGAGCCTGTATGGAAGAGCTTCAACAAGTTGCTGTTTCCACAAAATCACCAGACATTGCAACACAATATGGAAATCAGGTGTCCATTCTGTTGGCCATAGAACTGATCTGGAATCTGTGTGAAGTACTTTTCATTGATGCTGCTCCTGCCGGGTCTGTCCTCCTCCATCTGCTGGACTGGGTAAGGTTACACAAAGCTGATGTGGATGAAAAGGCCAAAGAAGTGCTGCAAAGTGAGAGCCCAGCTGAGCATCGTGACTACTGGGATGTGGTTGTGAGTTACATCCTGCAGGGCAGGTTGGAGGAGGCCAGGCAGATGCTAATGAAGCAAGCTGTTCTACATCCCGCAGCAAGGAACATGTACAAGCTGATGGACAGTCTG] [+] EMBL CA588670 [TCGTTCAAGAGCAATTTTTCGCTTGTGATTCATGGCGGTGGACGTGTAATAAATATTGATAACTTTGATTTCTTCTTACTATTGATTCTATTTTTCATAATGGAGGAGGTAGACGTTGAGCCAGTAATCACCAACATTCCAGCCAGTGCTGGGAAGCATTTGGGATTTACGTGGGGACCTGGCGATATCCTTGTGTATGAAACCCTGTACAAAGCATCAGGATTTGTGGGTTCAGGATCTCCCTTCATTCATGAAATCAGGAAGGACGAGGACATTTATTCACCAATTTTACGCAAACTTTTCAATGAATCACATCACATCTTTGTTGGGCTGCAAACAGTTTTTGAGGAACTTCCCAGCAAGAACAAAAAAGCTCAGTTTGTCAGCGTCAGTAAAAACTACAGATCTGTTATTCGAGCCTGTATGGAAGAGCTTCAACAAGTTGCTGTTTCCACAAAATCACCAGACATTGCAACACAATATGGAAATCAGGTGTCCATTCTGTTGGCCATAGAACTGATCTGGAATCTGTGTGAAGTACTTTTCATTGATGCTGCTCCTGCCGGGTCTGTCCTCCTCCATCTGCTGGACTGGGTAAGGTTACACAAAGCTGATGTGGATGAAAAGGCCAAAGAAGTGCTGCAAAGTGAGAGCCCAGCTGAGCATCGTGACTACTGGGATGTGGTTGTGAGTTACATCCTGCAGGGCAGGTTGGAGGAGGCCAGGCAGATGCTAATGAAGCAAGCTGTTCTACATCCCGCAGCAAGGAACATGTACAAGCTGATGGACAGTCTG] consensusID : consensus_721#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 743 fasta sequence [TCCGGTCAATGNGAAAGCGCGGATGCAATTTTTCGCTTGTGATTACGTATGAAGGAAGTGTCTTAAATATTGATAACTTTGATTTCTTCTTACTATTGATTCTATTTTTCATAATGGAGGATGTAGACGTTGAGCCAGTAATCACCAACATTCCAGCCAGTGCTGGGAAGCATTTGGGATTTACGTGGGGACCTGGCGATATCCTTGTGTATGAAACCCTGTACAAAGCATCAGGATTTGTGGGTTCAGGATCTCCCTTCATTCATGAAATCAGGAAGGACGAGGACATTTATTCACCAATTTTACGCAAACTTTTCAATGAATCACATCACATCTTTGTTGGGTTGTTAACAGTTGGAGAGGAACTTCCCAGCAAGAACAAAAAAGCTCAGTTTGTCAGCGTCAGTAAAAACTACAGATCTGTTATTCGAGCCTGTATGGAAGAGCTTCAACAAGTTGCTGTTTCCACAAAATCACCAGACATTGCAACACAATATGGAAATCAGGTGTCCATTCTGTTGGCCATAGAACTGATCTGGAATCTGTGTGAAGTACTTTTCATTGATGCTGCTCCTGCCGGGTCTGTCCTCCTCCATCTGGTGGACTGGGTAAGGTTACACAAAGGTGATGTGGATGAAAAGGCCAAAGAAGTGCTGCAAAGTGAGAGCCCAGCTGAGCATTGTGACTAGTGGGATGTGGTTGGGAGGTACATCCTGCAGGGGAGGTTGGAGGAGGGCAGGCAG] [+] EMBL CA588606 [TCCGGTCAATGNGAAAGCGCGGATGCAATTTTTCGCTTGTGATTACGTATGAAGGAAGTGTCTTAAATATTGATAACTTTGATTTCTTCTTACTATTGATTCTATTTTTCATAATGGAGGATGTAGACGTTGAGCCAGTAATCACCAACATTCCAGCCAGTGCTGGGAAGCATTTGGGATTTACGTGGGGACCTGGCGATATCCTTGTGTATGAAACCCTGTACAAAGCATCAGGATTTGTGGGTTCAGGATCTCCCTTCATTCATGAAATCAGGAAGGACGAGGACATTTATTCACCAATTTTACGCAAACTTTTCAATGAATCACATCACATCTTTGTTGGGTTGTTAACAGTTGGAGAGGAACTTCCCAGCAAGAACAAAAAAGCTCAGTTTGTCAGCGTCAGTAAAAACTACAGATCTGTTATTCGAGCCTGTATGGAAGAGCTTCAACAAGTTGCTGTTTCCACAAAATCACCAGACATTGCAACACAATATGGAAATCAGGTGTCCATTCTGTTGGCCATAGAACTGATCTGGAATCTGTGTGAAGTACTTTTCATTGATGCTGCTCCTGCCGGGTCTGTCCTCCTCCATCTGGTGGACTGGGTAAGGTTACACAAAGGTGATGTGGATGAAAAGGCCAAAGAAGTGCTGCAAAGTGAGAGCCCAGCTGAGCATTGTGACTAGTGGGATGTGGTTGGGAGGTACATCCTGCAGGGGAGGTTGGAGGAGGGCAGGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_721#0 --------------TCGTTCAAGAGCAATTTTTCGCTTGTGATTCATGGCGGTGGACGTG 46 consensus_721#1 TCCGGTCAATGNGAAAGCGCGGATGCAATTTTTCGCTTGTGATTACGTATGAAGGAAGTG 60 * * ******************** * *** *** consensus_721#0 TAATAAATATTGATAACTTTGATTTCTTCTTACTATTGATTCTATTTTTCATAATGGAGG 106 consensus_721#1 TCTTAAATATTGATAACTTTGATTTCTTCTTACTATTGATTCTATTTTTCATAATGGAGG 120 * ********************************************************* consensus_721#0 AGGTAGACGTTGAGCCAGTAATCACCAACATTCCAGCCAGTGCTGGGAAGCATTTGGGAT 166 consensus_721#1 ATGTAGACGTTGAGCCAGTAATCACCAACATTCCAGCCAGTGCTGGGAAGCATTTGGGAT 180 * ********************************************************** consensus_721#0 TTACGTGGGGACCTGGCGATATCCTTGTGTATGAAACCCTGTACAAAGCATCAGGATTTG 226 consensus_721#1 TTACGTGGGGACCTGGCGATATCCTTGTGTATGAAACCCTGTACAAAGCATCAGGATTTG 240 ************************************************************ consensus_721#0 TGGGTTCAGGATCTCCCTTCATTCATGAAATCAGGAAGGACGAGGACATTTATTCACCAA 286 consensus_721#1 TGGGTTCAGGATCTCCCTTCATTCATGAAATCAGGAAGGACGAGGACATTTATTCACCAA 300 ************************************************************ consensus_721#0 TTTTACGCAAACTTTTCAATGAATCACATCACATCTTTGTTGGGCTGCAAACAGTTTTTG 346 consensus_721#1 TTTTACGCAAACTTTTCAATGAATCACATCACATCTTTGTTGGGTTGTTAACAGTTGGAG 360 ******************************************** ** ******* * consensus_721#0 AGGAACTTCCCAGCAAGAACAAAAAAGCTCAGTTTGTCAGCGTCAGTAAAAACTACAGAT 406 consensus_721#1 AGGAACTTCCCAGCAAGAACAAAAAAGCTCAGTTTGTCAGCGTCAGTAAAAACTACAGAT 420 ************************************************************ consensus_721#0 CTGTTATTCGAGCCTGTATGGAAGAGCTTCAACAAGTTGCTGTTTCCACAAAATCACCAG 466 consensus_721#1 CTGTTATTCGAGCCTGTATGGAAGAGCTTCAACAAGTTGCTGTTTCCACAAAATCACCAG 480 ************************************************************ consensus_721#0 ACATTGCAACACAATATGGAAATCAGGTGTCCATTCTGTTGGCCATAGAACTGATCTGGA 526 consensus_721#1 ACATTGCAACACAATATGGAAATCAGGTGTCCATTCTGTTGGCCATAGAACTGATCTGGA 540 ************************************************************ consensus_721#0 ATCTGTGTGAAGTACTTTTCATTGATGCTGCTCCTGCCGGGTCTGTCCTCCTCCATCTGC 586 consensus_721#1 ATCTGTGTGAAGTACTTTTCATTGATGCTGCTCCTGCCGGGTCTGTCCTCCTCCATCTGG 600 *********************************************************** consensus_721#0 TGGACTGGGTAAGGTTACACAAAGCTGATGTGGATGAAAAGGCCAAAGAAGTGCTGCAAA 646 consensus_721#1 TGGACTGGGTAAGGTTACACAAAGGTGATGTGGATGAAAAGGCCAAAGAAGTGCTGCAAA 660 ************************ *********************************** consensus_721#0 GTGAGAGCCCAGCTGAGCATCGTGACTACTGGGATGTGGTTGTGAGTTACATCCTGCAGG 706 consensus_721#1 GTGAGAGCCCAGCTGAGCATTGTGACTAGTGGGATGTGGTTGGGAGGTACATCCTGCAGG 720 ******************** ******* ************* *** ************* consensus_721#0 GCAGGTTGGAGGAGGCCAGGCAGATGCTAATGAAGCAAGCTGTTCTACATCCCGCAGCAA 766 consensus_721#1 GGAGGTTGGAGGAGGGCAGGCAG------------------------------------- 743 * ************* ******* consensus_721#0 GGAACATGTACAAGCTGATGGACAGTCTG 795 consensus_721#1 ----------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |