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Takifugu rubripes
cluster # 721 cluster # 721       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_721#0 length = 795 sequences # 1  
consensus_721#1 length = 743 sequences # 1  

consensusID : consensus_721#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 795
fasta sequence
                              [TCGTTCAAGAGCAATTTTTCGCTTGTGATTCATGGCGGTGGACGTGTAATAAATATTGATAACTTTGATTTCTTCTTACTATTGATTCTATTTTTCATAATGGAGGAGGTAGACGTTGAGCCAGTAATCACCAACATTCCAGCCAGTGCTGGGAAGCATTTGGGATTTACGTGGGGACCTGGCGATATCCTTGTGTATGAAACCCTGTACAAAGCATCAGGATTTGTGGGTTCAGGATCTCCCTTCATTCATGAAATCAGGAAGGACGAGGACATTTATTCACCAATTTTACGCAAACTTTTCAATGAATCACATCACATCTTTGTTGGGCTGCAAACAGTTTTTGAGGAACTTCCCAGCAAGAACAAAAAAGCTCAGTTTGTCAGCGTCAGTAAAAACTACAGATCTGTTATTCGAGCCTGTATGGAAGAGCTTCAACAAGTTGCTGTTTCCACAAAATCACCAGACATTGCAACACAATATGGAAATCAGGTGTCCATTCTGTTGGCCATAGAACTGATCTGGAATCTGTGTGAAGTACTTTTCATTGATGCTGCTCCTGCCGGGTCTGTCCTCCTCCATCTGCTGGACTGGGTAAGGTTACACAAAGCTGATGTGGATGAAAAGGCCAAAGAAGTGCTGCAAAGTGAGAGCCCAGCTGAGCATCGTGACTACTGGGATGTGGTTGTGAGTTACATCCTGCAGGGCAGGTTGGAGGAGGCCAGGCAGATGCTAATGAAGCAAGCTGTTCTACATCCCGCAGCAAGGAACATGTACAAGCTGATGGACAGTCTG]

[+] EMBL CA588670             [TCGTTCAAGAGCAATTTTTCGCTTGTGATTCATGGCGGTGGACGTGTAATAAATATTGATAACTTTGATTTCTTCTTACTATTGATTCTATTTTTCATAATGGAGGAGGTAGACGTTGAGCCAGTAATCACCAACATTCCAGCCAGTGCTGGGAAGCATTTGGGATTTACGTGGGGACCTGGCGATATCCTTGTGTATGAAACCCTGTACAAAGCATCAGGATTTGTGGGTTCAGGATCTCCCTTCATTCATGAAATCAGGAAGGACGAGGACATTTATTCACCAATTTTACGCAAACTTTTCAATGAATCACATCACATCTTTGTTGGGCTGCAAACAGTTTTTGAGGAACTTCCCAGCAAGAACAAAAAAGCTCAGTTTGTCAGCGTCAGTAAAAACTACAGATCTGTTATTCGAGCCTGTATGGAAGAGCTTCAACAAGTTGCTGTTTCCACAAAATCACCAGACATTGCAACACAATATGGAAATCAGGTGTCCATTCTGTTGGCCATAGAACTGATCTGGAATCTGTGTGAAGTACTTTTCATTGATGCTGCTCCTGCCGGGTCTGTCCTCCTCCATCTGCTGGACTGGGTAAGGTTACACAAAGCTGATGTGGATGAAAAGGCCAAAGAAGTGCTGCAAAGTGAGAGCCCAGCTGAGCATCGTGACTACTGGGATGTGGTTGTGAGTTACATCCTGCAGGGCAGGTTGGAGGAGGCCAGGCAGATGCTAATGAAGCAAGCTGTTCTACATCCCGCAGCAAGGAACATGTACAAGCTGATGGACAGTCTG]


>consensus_721#0 TCGTTCAAGAGCAATTTTTCGCTTGTGATTCATGGCGGTGGACGTGTAATAAATATTGAT AACTTTGATTTCTTCTTACTATTGATTCTATTTTTCATAATGGAGGAGGTAGACGTTGAG CCAGTAATCACCAACATTCCAGCCAGTGCTGGGAAGCATTTGGGATTTACGTGGGGACCT GGCGATATCCTTGTGTATGAAACCCTGTACAAAGCATCAGGATTTGTGGGTTCAGGATCT CCCTTCATTCATGAAATCAGGAAGGACGAGGACATTTATTCACCAATTTTACGCAAACTT TTCAATGAATCACATCACATCTTTGTTGGGCTGCAAACAGTTTTTGAGGAACTTCCCAGC AAGAACAAAAAAGCTCAGTTTGTCAGCGTCAGTAAAAACTACAGATCTGTTATTCGAGCC TGTATGGAAGAGCTTCAACAAGTTGCTGTTTCCACAAAATCACCAGACATTGCAACACAA TATGGAAATCAGGTGTCCATTCTGTTGGCCATAGAACTGATCTGGAATCTGTGTGAAGTA CTTTTCATTGATGCTGCTCCTGCCGGGTCTGTCCTCCTCCATCTGCTGGACTGGGTAAGG TTACACAAAGCTGATGTGGATGAAAAGGCCAAAGAAGTGCTGCAAAGTGAGAGCCCAGCT GAGCATCGTGACTACTGGGATGTGGTTGTGAGTTACATCCTGCAGGGCAGGTTGGAGGAG GCCAGGCAGATGCTAATGAAGCAAGCTGTTCTACATCCCGCAGCAAGGAACATGTACAAG CTGATGGACAGTCTG



consensusID : consensus_721#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 743
fasta sequence
                              [TCCGGTCAATGNGAAAGCGCGGATGCAATTTTTCGCTTGTGATTACGTATGAAGGAAGTGTCTTAAATATTGATAACTTTGATTTCTTCTTACTATTGATTCTATTTTTCATAATGGAGGATGTAGACGTTGAGCCAGTAATCACCAACATTCCAGCCAGTGCTGGGAAGCATTTGGGATTTACGTGGGGACCTGGCGATATCCTTGTGTATGAAACCCTGTACAAAGCATCAGGATTTGTGGGTTCAGGATCTCCCTTCATTCATGAAATCAGGAAGGACGAGGACATTTATTCACCAATTTTACGCAAACTTTTCAATGAATCACATCACATCTTTGTTGGGTTGTTAACAGTTGGAGAGGAACTTCCCAGCAAGAACAAAAAAGCTCAGTTTGTCAGCGTCAGTAAAAACTACAGATCTGTTATTCGAGCCTGTATGGAAGAGCTTCAACAAGTTGCTGTTTCCACAAAATCACCAGACATTGCAACACAATATGGAAATCAGGTGTCCATTCTGTTGGCCATAGAACTGATCTGGAATCTGTGTGAAGTACTTTTCATTGATGCTGCTCCTGCCGGGTCTGTCCTCCTCCATCTGGTGGACTGGGTAAGGTTACACAAAGGTGATGTGGATGAAAAGGCCAAAGAAGTGCTGCAAAGTGAGAGCCCAGCTGAGCATTGTGACTAGTGGGATGTGGTTGGGAGGTACATCCTGCAGGGGAGGTTGGAGGAGGGCAGGCAG]

[+] EMBL CA588606             [TCCGGTCAATGNGAAAGCGCGGATGCAATTTTTCGCTTGTGATTACGTATGAAGGAAGTGTCTTAAATATTGATAACTTTGATTTCTTCTTACTATTGATTCTATTTTTCATAATGGAGGATGTAGACGTTGAGCCAGTAATCACCAACATTCCAGCCAGTGCTGGGAAGCATTTGGGATTTACGTGGGGACCTGGCGATATCCTTGTGTATGAAACCCTGTACAAAGCATCAGGATTTGTGGGTTCAGGATCTCCCTTCATTCATGAAATCAGGAAGGACGAGGACATTTATTCACCAATTTTACGCAAACTTTTCAATGAATCACATCACATCTTTGTTGGGTTGTTAACAGTTGGAGAGGAACTTCCCAGCAAGAACAAAAAAGCTCAGTTTGTCAGCGTCAGTAAAAACTACAGATCTGTTATTCGAGCCTGTATGGAAGAGCTTCAACAAGTTGCTGTTTCCACAAAATCACCAGACATTGCAACACAATATGGAAATCAGGTGTCCATTCTGTTGGCCATAGAACTGATCTGGAATCTGTGTGAAGTACTTTTCATTGATGCTGCTCCTGCCGGGTCTGTCCTCCTCCATCTGGTGGACTGGGTAAGGTTACACAAAGGTGATGTGGATGAAAAGGCCAAAGAAGTGCTGCAAAGTGAGAGCCCAGCTGAGCATTGTGACTAGTGGGATGTGGTTGGGAGGTACATCCTGCAGGGGAGGTTGGAGGAGGGCAGGCAG]


>consensus_721#1 TCCGGTCAATGNGAAAGCGCGGATGCAATTTTTCGCTTGTGATTACGTATGAAGGAAGTG TCTTAAATATTGATAACTTTGATTTCTTCTTACTATTGATTCTATTTTTCATAATGGAGG ATGTAGACGTTGAGCCAGTAATCACCAACATTCCAGCCAGTGCTGGGAAGCATTTGGGAT TTACGTGGGGACCTGGCGATATCCTTGTGTATGAAACCCTGTACAAAGCATCAGGATTTG TGGGTTCAGGATCTCCCTTCATTCATGAAATCAGGAAGGACGAGGACATTTATTCACCAA TTTTACGCAAACTTTTCAATGAATCACATCACATCTTTGTTGGGTTGTTAACAGTTGGAG AGGAACTTCCCAGCAAGAACAAAAAAGCTCAGTTTGTCAGCGTCAGTAAAAACTACAGAT CTGTTATTCGAGCCTGTATGGAAGAGCTTCAACAAGTTGCTGTTTCCACAAAATCACCAG ACATTGCAACACAATATGGAAATCAGGTGTCCATTCTGTTGGCCATAGAACTGATCTGGA ATCTGTGTGAAGTACTTTTCATTGATGCTGCTCCTGCCGGGTCTGTCCTCCTCCATCTGG TGGACTGGGTAAGGTTACACAAAGGTGATGTGGATGAAAAGGCCAAAGAAGTGCTGCAAA GTGAGAGCCCAGCTGAGCATTGTGACTAGTGGGATGTGGTTGGGAGGTACATCCTGCAGG GGAGGTTGGAGGAGGGCAGGCAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_721#0      --------------TCGTTCAAGAGCAATTTTTCGCTTGTGATTCATGGCGGTGGACGTG 46
consensus_721#1      TCCGGTCAATGNGAAAGCGCGGATGCAATTTTTCGCTTGTGATTACGTATGAAGGAAGTG 60
                                     *  *    ********************      *  *** ***

consensus_721#0      TAATAAATATTGATAACTTTGATTTCTTCTTACTATTGATTCTATTTTTCATAATGGAGG 106
consensus_721#1      TCTTAAATATTGATAACTTTGATTTCTTCTTACTATTGATTCTATTTTTCATAATGGAGG 120
                     *  *********************************************************

consensus_721#0      AGGTAGACGTTGAGCCAGTAATCACCAACATTCCAGCCAGTGCTGGGAAGCATTTGGGAT 166
consensus_721#1      ATGTAGACGTTGAGCCAGTAATCACCAACATTCCAGCCAGTGCTGGGAAGCATTTGGGAT 180
                     * **********************************************************

consensus_721#0      TTACGTGGGGACCTGGCGATATCCTTGTGTATGAAACCCTGTACAAAGCATCAGGATTTG 226
consensus_721#1      TTACGTGGGGACCTGGCGATATCCTTGTGTATGAAACCCTGTACAAAGCATCAGGATTTG 240
                     ************************************************************

consensus_721#0      TGGGTTCAGGATCTCCCTTCATTCATGAAATCAGGAAGGACGAGGACATTTATTCACCAA 286
consensus_721#1      TGGGTTCAGGATCTCCCTTCATTCATGAAATCAGGAAGGACGAGGACATTTATTCACCAA 300
                     ************************************************************

consensus_721#0      TTTTACGCAAACTTTTCAATGAATCACATCACATCTTTGTTGGGCTGCAAACAGTTTTTG 346
consensus_721#1      TTTTACGCAAACTTTTCAATGAATCACATCACATCTTTGTTGGGTTGTTAACAGTTGGAG 360
                     ******************************************** **  *******   *

consensus_721#0      AGGAACTTCCCAGCAAGAACAAAAAAGCTCAGTTTGTCAGCGTCAGTAAAAACTACAGAT 406
consensus_721#1      AGGAACTTCCCAGCAAGAACAAAAAAGCTCAGTTTGTCAGCGTCAGTAAAAACTACAGAT 420
                     ************************************************************

consensus_721#0      CTGTTATTCGAGCCTGTATGGAAGAGCTTCAACAAGTTGCTGTTTCCACAAAATCACCAG 466
consensus_721#1      CTGTTATTCGAGCCTGTATGGAAGAGCTTCAACAAGTTGCTGTTTCCACAAAATCACCAG 480
                     ************************************************************

consensus_721#0      ACATTGCAACACAATATGGAAATCAGGTGTCCATTCTGTTGGCCATAGAACTGATCTGGA 526
consensus_721#1      ACATTGCAACACAATATGGAAATCAGGTGTCCATTCTGTTGGCCATAGAACTGATCTGGA 540
                     ************************************************************

consensus_721#0      ATCTGTGTGAAGTACTTTTCATTGATGCTGCTCCTGCCGGGTCTGTCCTCCTCCATCTGC 586
consensus_721#1      ATCTGTGTGAAGTACTTTTCATTGATGCTGCTCCTGCCGGGTCTGTCCTCCTCCATCTGG 600
                     *********************************************************** 

consensus_721#0      TGGACTGGGTAAGGTTACACAAAGCTGATGTGGATGAAAAGGCCAAAGAAGTGCTGCAAA 646
consensus_721#1      TGGACTGGGTAAGGTTACACAAAGGTGATGTGGATGAAAAGGCCAAAGAAGTGCTGCAAA 660
                     ************************ ***********************************

consensus_721#0      GTGAGAGCCCAGCTGAGCATCGTGACTACTGGGATGTGGTTGTGAGTTACATCCTGCAGG 706
consensus_721#1      GTGAGAGCCCAGCTGAGCATTGTGACTAGTGGGATGTGGTTGGGAGGTACATCCTGCAGG 720
                     ******************** ******* ************* *** *************

consensus_721#0      GCAGGTTGGAGGAGGCCAGGCAGATGCTAATGAAGCAAGCTGTTCTACATCCCGCAGCAA 766
consensus_721#1      GGAGGTTGGAGGAGGGCAGGCAG------------------------------------- 743
                     * ************* *******                                     

consensus_721#0      GGAACATGTACAAGCTGATGGACAGTCTG 795
consensus_721#1      -----------------------------
                                                  




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)