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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_760#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence
[GGAAAGGGTCACGAACTCTGACCCTCCCGTCAAATGCACCAGACTTAATATTACTTTGTTAATAGGACATATAATACACAATCCAACAACCTCTTGACTGCTGTCTCAAGAGGATACTGATGTGAAAACAGTGGGAGAAAGTGCTTTTATTATCAGAATGGATGGGCAGACCCAAAGGATTCAGCTTGTCTCAGCAGACAGAATCCAGATTGTAACTGATCAGCAGACTGGCCAGAAGATCCAGATCGTCACAGCACTTCAGCCATCCTCCCCTGGAAAGCAGCAGTTTATTCTCACGAATGCTGACTATTCCCCCGGTGGGAAAGTAATTGTGGCCAAACAAGAAAGCTCACCTAACAAAGTTATTCTCACTTCTTCAGACAGGTCTGGGGGTAACCAGCTGTTGGGTGCTTTCCCTGAGCTGGGTGGGCAACAGATTCTATTTGTGACTGTAAGGATCCCACCGTCTGGGCCTTGTGAAACCCTCCTATATTACTGTGTTGTCTGCGGAGAAAAAGGCTCTGGAAACACTACTGGGCCCTCAACTTTTGAAGGGTGTTAAGGGCTCCTTCTACGCCGT]
[+] EMBL CA589136 [GGAAAGGGTCACGAACTCTGACCCTCCCGTCAAATGCACCAGACTTAATATTACTTTGTTAATAGGACATATAATACACAATCCAACAACCTCTTGACTGCTGTCTCAAGAGGATACTGATGTGAAAACAGTGGGAGAAAGTGCTTTTATTATCAGAATGGATGGGCAGACCCAAAGGATTCAGCTTGTCTCAGCAGACAGAATCCAGATTGTAACTGATCAGCAGACTGGCCAGAAGATCCAGATCGTCACAGCACTTCAGCCATCCTCCCCTGGAAAGCAGCAGTTTATTCTCACGAATGCTGACTATTCCCCCGGTGGGAAAGTAATTGTGGCCAAACAAGAAAGCTCACCTAACAAAGTTATTCTCACTTCTTCAGACAGGTCTGGGGGTAACCAGCTGTTGGGTGCTTTCCCTGAGCTGGGTGGGCAACAGATTCTATTTGTGACTGTAAGGATCCCACCGTCTGGGCCTTGTGAAACCCTCCTATATTACTGTGTTGTCTGCGGAGAAAAAGGCTCTGGAAACACTACTGGGCCCTCAACTTTTGAAGGGTGTTAAGGGCTCCTTCTACGCCGT]
consensusID : consensus_760#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence
[ATAATACACAATCGGAGGGGCCTCTTGACTGCTGTCTCAACACNATACTGATGTGAAAACAGTGCCAGAAAGTGCTTTTATTATCAGAATGGATGGGCAGACCCAAAGGATTCAGCTTGTCTCAGCAGACAGAATCCAGATTGTAACTGATCAGCAGACTGGCCAGAAGATCCAGATCGTCACAGCACTTCAGCCATCCTCCCCTGACGGCTCGGCGGNTAACCAGCTGTTGTTTGCTTCCCCTGATCTGGCTGGGCAACAGATTCAGTTTGTGACTGAAGGATCCGACCAGTCTGGCCTTGTGAAGCCAGTCGTAGAATACTGTGTTGTCTGCGGAGACAAGGCCTCGGG]
[+] EMBL FR0061681 [ATAATACACAATCGGAGGGGCCTCTTGACTGCTGTCTCAACACNATACTGATGTGAAAACAGTGCCAGAAAGTGCTTTTATTATCAGAATGGATGGGCAGACCCAAAGGATTCAGCTTGTCTCAGCAGACAGAATCCAGATTGTAACTGATCAGCAGACTGGCCAGAAGATCCAGATCGTCACAGCACTTCAGCCATCCTCCCCTGACGGCTCGGCGGNTAACCAGCTGTTGTTTGCTTCCCCTGATCTGGCTGGGCAACAGATTCAGTTTGTGACTGAAGGATCCGACCAGTCTGGCCTTGTGAAGCCAGTCGTAGAATACTGTGTTGTCTGCGGAGACAAGGCCTCGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_760#0 GGAAAGGGTCACGAACTCTGACCCTCCCGTCAAATGCACCAGACTTAATATTACTTTGTT 60
consensus_760#1 ------------------------------------------------------------
consensus_760#0 AATAGGACATATAATACACAATCCAACAA-CCTCTTGACTGCTGTCTCAAGAGGATACTG 119
consensus_760#1 ----------ATAATACACAATCGGAGGGGCCTCTTGACTGCTGTCTCAACACNATACTG 50
************* * ******************** * ******
consensus_760#0 ATGTGAAAACAGTGGGAGAAAGTGCTTTTATTATCAGAATGGATGGGCAGACCCAAAGGA 179
consensus_760#1 ATGTGAAAACAGTGCCAGAAAGTGCTTTTATTATCAGAATGGATGGGCAGACCCAAAGGA 110
************** ********************************************
consensus_760#0 TTCAGCTTGTCTCAGCAGACAGAATCCAGATTGTAACTGATCAGCAGACTGGCCAGAAGA 239
consensus_760#1 TTCAGCTTGTCTCAGCAGACAGAATCCAGATTGTAACTGATCAGCAGACTGGCCAGAAGA 170
************************************************************
consensus_760#0 TCCAGATCGTCACAGCACTTCAGCCATCCTCCCCTGGAAAGCAGCAGTTTATTCTCACGA 299
consensus_760#1 TCCAGATCGTCACAGCACTTCAGCCATCCTCCCCTG------------------------ 206
************************************
consensus_760#0 ATGCTGACTATTCCCCCGGTGGGAAAGTAATTGTGGCCAAACAAGAAAGCTCACCTAACA 359
consensus_760#1 ------------------------------------------------------------
consensus_760#0 AAGTTATTCTCACTTCTTCAGACAGGTCTGGGGGTAACCAGCTGTTGGGTGCTTTCCCTG 419
consensus_760#1 ---------------------ACGGCTCGGCGGNTAACCAGCTGTTGTTTGCTTCCCCTG 245
** * ** * ** ************* ***** *****
consensus_760#0 AGCTGGGTGGGCAACAGATTCTATTTGTGACTGTAAGGATCCCACCGTCTGGGCCTTGTG 479
consensus_760#1 ATCTGGCTGGGCAACAGATTCAGTTTGTGACTG-AAGGATCCGACCAGTCTGGCCTTGTG 304
* **** ************** ********** ******** *** *********
consensus_760#0 AAACCC-TCCTATATTACTGTGTTGTCTGCGGAGAAAAAGGCTCTGGAAACACTACTGGG 538
consensus_760#1 AAGCCAGTCGTAGAATACTGTGTTGTCTGCGGAGACAAGGCCTCGGG------------- 351
** ** ** ** * ******************** ** * *** **
consensus_760#0 CCCTCAACTTTTGAAGGGTGTTAAGGGCTCCTTCTACGCCGT 580
consensus_760#1 ------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |