cluster # 767

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Takifugu rubripes
cluster # 767 cluster # 767 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_767#0 length = 472 sequences # 1

consensus_767#1 length = 427 sequences # 1

consensusID : consensus_767#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 472
fasta sequence

                              [CAAGAAGAGAGTGCAGTTGTACTACCAGCAGATACAGGAGAGGTCTCCTCTCAGCGAGCAGGAGATGAACGCTCACCTTGCCGAGGAGTCACGGAAATACAGAAATGAATTCAACACCAACCTGGCCTTGACGGAAATCTACAAATATGCCAAAAGATACAGAAACCAGGTGGTGAGTGCTCTGGAGTCAAACCCCACTGCACGGCGCACTCAGCTGCACCACAAGTTCGAGCAGGTCATTGCTCTTGTGGAGGACAACATCTACGAGTGCTGCAGCGAGGCCTGAACCAGCCGGCGTGTTTCTTTTCCTCCCACCAGTCATTTCTTTCTCCTGCTGACAGCTGCCTTTTTCTCAACAAAAGCTATTTGGGAATGATGCCCACTGAAGCAAAAGCCTTTCCTAAAGCGTTGTTATTGTTGAGAAGGCGTGAAAAGTGGAAGGGCAAAGGACTTAAACCTCTAAAGCACCATT]

[+] EMBL FR0057776            [CAAGAAGAGAGTGCAGTTGTACTACCAGCAGATACAGGAGAGGTCTCCTCTCAGCGAGCAGGAGATGAACGCTCACCTTGCCGAGGAGTCACGGAAATACAGAAATGAATTCAACACCAACCTGGCCTTGACGGAAATCTACAAATATGCCAAAAGATACAGAAACCAGGTGGTGAGTGCTCTGGAGTCAAACCCCACTGCACGGCGCACTCAGCTGCACCACAAGTTCGAGCAGGTCATTGCTCTTGTGGAGGACAACATCTACGAGTGCTGCAGCGAGGCCTGAACCAGCCGGCGTGTTTCTTTTCCTCCCACCAGTCATTTCTTTCTCCTGCTGACAGCTGCCTTTTTCTCAACAAAAGCTATTTGGGAATGATGCCCACTGAAGCAAAAGCCTTTCCTAAAGCGTTGTTATTGTTGAGAAGGCGTGAAAAGTGGAAGGGCAAAGGACTTAAACCTCTAAAGCACCATT]




>consensus_767#0
CAAGAAGAGAGTGCAGTTGTACTACCAGCAGATACAGGAGAGGTCTCCTCTCAGCGAGCA
GGAGATGAACGCTCACCTTGCCGAGGAGTCACGGAAATACAGAAATGAATTCAACACCAA
CCTGGCCTTGACGGAAATCTACAAATATGCCAAAAGATACAGAAACCAGGTGGTGAGTGC
TCTGGAGTCAAACCCCACTGCACGGCGCACTCAGCTGCACCACAAGTTCGAGCAGGTCAT
TGCTCTTGTGGAGGACAACATCTACGAGTGCTGCAGCGAGGCCTGAACCAGCCGGCGTGT
TTCTTTTCCTCCCACCAGTCATTTCTTTCTCCTGCTGACAGCTGCCTTTTTCTCAACAAA
AGCTATTTGGGAATGATGCCCACTGAAGCAAAAGCCTTTCCTAAAGCGTTGTTATTGTTG
AGAAGGCGTGAAAAGTGGAAGGGCAAAGGACTTAAACCTCTAAAGCACCATT

consensusID : consensus_767#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 427
fasta sequence

                              [TAGACCCCCTTCGGTACCAGAATTTCAATTCCGTGAGCTGGCAGAGTATGATGCACACACGTTCTGAACACTTTACTCACCCGTGACTCCTCGGCAAGGTGAGCGTTCATCTCCTGCTCGCTGAGAGGAGACATTTCCTGTATCTGCTGGTAGTACAACTGCACTCTCTTCTTGTACTCGGGGATCTCCTTAGCATAAAGCAGCTTGTTTGTCGGGGAGTCCTGGAACATGGATTTAAAGAATGCTTTCAACAAAGTTGAAACCCAAGATCAGACGATCCGCGAGTGTTTCCATTCAATGCTAATCATTTTCATCAGACCTTTTGATTGTAACATCCGGCTTATCTCCCGCTGGACCATTCTATCCTGCCTTTTTTTTTTTGCATCTATAGAGGGACCAGCTTGAGTAAAACTCTCTCATTGCGTTG]

[+] EMBL CA589257             [TAGACCCCCTTCGGTACCAGAATTTCAATTCCGTGAGCTGGCAGAGTATGATGCACACACGTTCTGAACACTTTACTCACCCGTGACTCCTCGGCAAGGTGAGCGTTCATCTCCTGCTCGCTGAGAGGAGACATTTCCTGTATCTGCTGGTAGTACAACTGCACTCTCTTCTTGTACTCGGGGATCTCCTTAGCATAAAGCAGCTTGTTTGTCGGGGAGTCCTGGAACATGGATTTAAAGAATGCTTTCAACAAAGTTGAAACCCAAGATCAGACGATCCGCGAGTGTTTCCATTCAATGCTAATCATTTTCATCAGACCTTTTGATTGTAACATCCGGCTTATCTCCCGCTGGACCATTCTATCCTGCCTTTTTTTTTTTGCATCTATAGAGGGACCAGCTTGAGTAAAACTCTCTCATTGCGTTG]




>consensus_767#1
TAGACCCCCTTCGGTACCAGAATTTCAATTCCGTGAGCTGGCAGAGTATGATGCACACAC
GTTCTGAACACTTTACTCACCCGTGACTCCTCGGCAAGGTGAGCGTTCATCTCCTGCTCG
CTGAGAGGAGACATTTCCTGTATCTGCTGGTAGTACAACTGCACTCTCTTCTTGTACTCG
GGGATCTCCTTAGCATAAAGCAGCTTGTTTGTCGGGGAGTCCTGGAACATGGATTTAAAG
AATGCTTTCAACAAAGTTGAAACCCAAGATCAGACGATCCGCGAGTGTTTCCATTCAATG
CTAATCATTTTCATCAGACCTTTTGATTGTAACATCCGGCTTATCTCCCGCTGGACCATT
CTATCCTGCCTTTTTTTTTTTGCATCTATAGAGGGACCAGCTTGAGTAAAACTCTCTCAT
TGCGTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_767#0      CAAGAAGAGAGTGCAGTTG-TACTACCAG--CAGATACAGGAGA-GGTCTCCTCTCA-GC 55
consensus_767#1      ------TAGACCCCCTTCGGTACCAGAATTTCAATTCCGTGAGCTGGCAGAGTATGATGC 54
                            ***   *  * * *** *  *   **  * *  ***  **     * * * **

consensus_767#0      GAGCAGGAGATGAACGCTCACCTTGCCGAGGAGTCACGGAAATACAGAAATGAATTCAAC 115
consensus_767#1      ACACACGTTCTGAACACTTTACTCACCCGTGACTCCTCGGCA---AGGTGAGCGTTCATC 111
                        ** *   ***** **   **  **   ** **   *  *   **    *  **** *

consensus_767#0      ACCAACCTGGCCTTGACGGAAATCTACAA-ATATGCCAAAAGATACAGAAACCAGGTGGT 174
consensus_767#1      TCCTGCTCGCTGAGAGGAGACATTTCCTGTATCTGCTGGTAG-TACA-ACTGCACTCTCT 169
                      **  *  *         ** ** * *   ** ***    ** **** *   **     *

consensus_767#0      GAGTGCTCTGGAGTCAAACCCCACTGCACGGCGCACTCAGCTGCACCACAAGTTCGAGCA 234
consensus_767#1      TCTTGTACTCGGG--GATCTCCTTAGCATAAAGCAGCTTGTTTGTCGGGGAGTCC---TG 224
                        **  ** * *   * * **   ***    ***    * *   *    *** *     

consensus_767#0      GGTCATTGCTCTTGTGGAGGACAACATCTACGAGTGCTGCAGCGAGGCCTGAACCAGCCG 294
consensus_767#1      GAACATGGATTT---AAAGAATGCTTTCAACAAA-GTTGAAACCCAAGATCAGACGATCC 280
                     *  *** * * *     ** *     ** ** *  * ** * *      * *  *   * 

consensus_767#0      GCGTGTTTCTTTTCCTCCCACCAGTCATTTCTTTCTCCTGCTGACAGCTGCCTTTTTCTC 354
consensus_767#1      GCGAGTGTTTCCATTCAATGCTAATCATTTT-------------CATCAGACCTTTTGAT 327
                     *** ** * *          * * ******              ** * * * ****   

consensus_767#0      AACAAAAGCTATTTGGGAATGATGCCCACTGAAGCAAAAGCCTTTCCTAAAGCGTTGTTA 414
consensus_767#1      TGTAACATCCGGCT-----TATCTCCCGCTGGACCAT---TCTATCCTGCCTTTTTTTTT 379
                        ** * *    *     *    *** *** * **     ** ****      ** ** 

consensus_767#0      TTGTTGAGAAGGCGTGAAAAGTGGAAGGGCAAAGGACTTAAACCTCTAAAGCACCATT 472
consensus_767#1      TTGCATCTATAGAGGGACCAGCTTGAGTAAAACTCTCTCATTGCGTTG---------- 427
                     ***     *  * * **  **    **   **    ** *   *  *

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)