Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 771 cluster # 771       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_771#0 length = 390 sequences # 1  
 consensus_771#1 length = 291 sequences # 1  
consensusID : consensus_771#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 390
fasta sequence 
                              [CGCGCCGCGGAGCTGAAATCTGCGGAAATACCGGAGCAGACCACCGCACGGCGGAGCTCTCACGCAGGCGCCCTCTCATGTGCCGTTTAGCCAGTTGATGCGGGGAGAAAGTTTTGGATATGTTTTTCTAGAGTTTCTCCTCTAAAGTGCAACGACTTCGAGCCTCTCCGGATTTTGGATTATGTTTATGCGGGATCGTCAATCCTCCTGATCGCCATATTTGTGCGCGGCGAAACTCGGGGGAAAGTTGTCAGAGTTATGACATTTGAGGCGTTCATGAAGCTGCATGGAGTCGACTTTGATCGAAAGCAAAGTGGCTCCGTGGGGCTGACTGTGGAGCGGATTGTGCACCATTTGTAAGGTCTGGCACCATAAGGAGGATGAAAAGAA]

[+] EMBL CA589322             [CGCGCCGCGGAGCTGAAATCTGCGGAAATACCGGAGCAGACCACCGCACGGCGGAGCTCTCACGCAGGCGCCCTCTCATGTGCCGTTTAGCCAGTTGATGCGGGGAGAAAGTTTTGGATATGTTTTTCTAGAGTTTCTCCTCTAAAGTGCAACGACTTCGAGCCTCTCCGGATTTTGGATTATGTTTATGCGGGATCGTCAATCCTCCTGATCGCCATATTTGTGCGCGGCGAAACTCGGGGGAAAGTTGTCAGAGTTATGACATTTGAGGCGTTCATGAAGCTGCATGGAGTCGACTTTGATCGAAAGCAAAGTGGCTCCGTGGGGCTGACTGTGGAGCGGATTGTGCACCATTTGTAAGGTCTGGCACCATAAGGAGGATGAAAAGAA]




>consensus_771#0
CGCGCCGCGGAGCTGAAATCTGCGGAAATACCGGAGCAGACCACCGCACGGCGGAGCTCT
CACGCAGGCGCCCTCTCATGTGCCGTTTAGCCAGTTGATGCGGGGAGAAAGTTTTGGATA
TGTTTTTCTAGAGTTTCTCCTCTAAAGTGCAACGACTTCGAGCCTCTCCGGATTTTGGAT
TATGTTTATGCGGGATCGTCAATCCTCCTGATCGCCATATTTGTGCGCGGCGAAACTCGG
GGGAAAGTTGTCAGAGTTATGACATTTGAGGCGTTCATGAAGCTGCATGGAGTCGACTTT
GATCGAAAGCAAAGTGGCTCCGTGGGGCTGACTGTGGAGCGGATTGTGCACCATTTGTAA
GGTCTGGCACCATAAGGAGGATGAAAAGAA

consensusID : consensus_771#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 291
fasta sequence 
                              [GGATTGGTGGAGGGGCGGTATTCTCCATCGTCAATCCTCCTGATCCCATATCTCTGCCCCGCGAAACTCGGCGTAAAGTTGTCAGAGTTATGACATTTGAGGCGTTCATGAAGCTGCATGGAGTCGACTTTGATCGAAAGCAAAGTGCCTCCGTGGGGCTGACTGTGGAGCGGATTGCGCACCATTTGTAAGGCCTGGCACCATAAGGGGAGGAGAAGAAAGGGACGACCAGCTTCAGCTTTGATCCTGGGAGGAACTTCGTGTGCTCTCCACTCTGCACCACCCCAGAGA]

[+] EMBL FR0058967            [GGATTGGTGGAGGGGCGGTATTCTCCATCGTCAATCCTCCTGATCCCATATCTCTGCCCCGCGAAACTCGGCGTAAAGTTGTCAGAGTTATGACATTTGAGGCGTTCATGAAGCTGCATGGAGTCGACTTTGATCGAAAGCAAAGTGCCTCCGTGGGGCTGACTGTGGAGCGGATTGCGCACCATTTGTAAGGCCTGGCACCATAAGGGGAGGAGAAGAAAGGGACGACCAGCTTCAGCTTTGATCCTGGGAGGAACTTCGTGTGCTCTCCACTCTGCACCACCCCAGAGA]




>consensus_771#1
GGATTGGTGGAGGGGCGGTATTCTCCATCGTCAATCCTCCTGATCCCATATCTCTGCCCC
GCGAAACTCGGCGTAAAGTTGTCAGAGTTATGACATTTGAGGCGTTCATGAAGCTGCATG
GAGTCGACTTTGATCGAAAGCAAAGTGCCTCCGTGGGGCTGACTGTGGAGCGGATTGCGC
ACCATTTGTAAGGCCTGGCACCATAAGGGGAGGAGAAGAAAGGGACGACCAGCTTCAGCT
TTGATCCTGGGAGGAACTTCGTGTGCTCTCCACTCTGCACCACCCCAGAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_771#0      CGCGCCGCGGAGCTGAAATCTGCGGAAATACCGGAGCAGACCACCGCACGGCGGAGCTCT 60
consensus_771#1      ------------------------------------------------------------
                                                                                 

consensus_771#0      CACGCAGGCGCCCTCTCATGTGCCGTTTAGCCAGTTGATGCGGGGAGAAAGTTTTGGATA 120
consensus_771#1      ------------------------------------------------------------
                                                                                 

consensus_771#0      TGTTTTTCTAGAGTTTCTCCTCTAAAGTGCAACGACTTCGAGCCTCTCCGGATTT-TGGA 179
consensus_771#1      -------------------------------------------------GGATTGGTGGA 11
                                                                      *****  ****

consensus_771#0      TTATGTTTATGCGGGATCGTCAATCCTCCTGATCGCCATATTTGTGCGCGGCGAAACTCG 239
consensus_771#1      GGGGCGGTATTCTCCATCGTCAATCCTCCTGATC-CCATATCTCTGCCCCGCGAAACTCG 70
                            *** *   ******************* ****** * *** * **********

consensus_771#0      GGGGAAAGTTGTCAGAGTTATGACATTTGAGGCGTTCATGAAGCTGCATGGAGTCGACTT 299
consensus_771#1      GCGTAAAGTTGTCAGAGTTATGACATTTGAGGCGTTCATGAAGCTGCATGGAGTCGACTT 130
                     * * ********************************************************

consensus_771#0      TGATCGAAAGCAAAGTGGCTCCGTGGGGCTGACTGTGGAGCGGATTGTGCACCATTTGTA 359
consensus_771#1      TGATCGAAAGCAAAGTGCCTCCGTGGGGCTGACTGTGGAGCGGATTGCGCACCATTTGTA 190
                     ***************** ***************************** ************

consensus_771#0      AGGTCTGGCACCATAAGGAGGATGAAAAGAA----------------------------- 390
consensus_771#1      AGGCCTGGCACCATAAGG-GGAGGAGAAGAAAGGGACGACCAGCTTCAGCTTTGATCCTG 249
                     *** ************** *** ** *****                             

consensus_771#0      ------------------------------------------
consensus_771#1      GGAGGAACTTCGTGTGCTCTCCACTCTGCACCACCCCAGAGA 291


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)