These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_771#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence [CGCGCCGCGGAGCTGAAATCTGCGGAAATACCGGAGCAGACCACCGCACGGCGGAGCTCTCACGCAGGCGCCCTCTCATGTGCCGTTTAGCCAGTTGATGCGGGGAGAAAGTTTTGGATATGTTTTTCTAGAGTTTCTCCTCTAAAGTGCAACGACTTCGAGCCTCTCCGGATTTTGGATTATGTTTATGCGGGATCGTCAATCCTCCTGATCGCCATATTTGTGCGCGGCGAAACTCGGGGGAAAGTTGTCAGAGTTATGACATTTGAGGCGTTCATGAAGCTGCATGGAGTCGACTTTGATCGAAAGCAAAGTGGCTCCGTGGGGCTGACTGTGGAGCGGATTGTGCACCATTTGTAAGGTCTGGCACCATAAGGAGGATGAAAAGAA] [+] EMBL CA589322 [CGCGCCGCGGAGCTGAAATCTGCGGAAATACCGGAGCAGACCACCGCACGGCGGAGCTCTCACGCAGGCGCCCTCTCATGTGCCGTTTAGCCAGTTGATGCGGGGAGAAAGTTTTGGATATGTTTTTCTAGAGTTTCTCCTCTAAAGTGCAACGACTTCGAGCCTCTCCGGATTTTGGATTATGTTTATGCGGGATCGTCAATCCTCCTGATCGCCATATTTGTGCGCGGCGAAACTCGGGGGAAAGTTGTCAGAGTTATGACATTTGAGGCGTTCATGAAGCTGCATGGAGTCGACTTTGATCGAAAGCAAAGTGGCTCCGTGGGGCTGACTGTGGAGCGGATTGTGCACCATTTGTAAGGTCTGGCACCATAAGGAGGATGAAAAGAA] consensusID : consensus_771#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 291 fasta sequence [GGATTGGTGGAGGGGCGGTATTCTCCATCGTCAATCCTCCTGATCCCATATCTCTGCCCCGCGAAACTCGGCGTAAAGTTGTCAGAGTTATGACATTTGAGGCGTTCATGAAGCTGCATGGAGTCGACTTTGATCGAAAGCAAAGTGCCTCCGTGGGGCTGACTGTGGAGCGGATTGCGCACCATTTGTAAGGCCTGGCACCATAAGGGGAGGAGAAGAAAGGGACGACCAGCTTCAGCTTTGATCCTGGGAGGAACTTCGTGTGCTCTCCACTCTGCACCACCCCAGAGA] [+] EMBL FR0058967 [GGATTGGTGGAGGGGCGGTATTCTCCATCGTCAATCCTCCTGATCCCATATCTCTGCCCCGCGAAACTCGGCGTAAAGTTGTCAGAGTTATGACATTTGAGGCGTTCATGAAGCTGCATGGAGTCGACTTTGATCGAAAGCAAAGTGCCTCCGTGGGGCTGACTGTGGAGCGGATTGCGCACCATTTGTAAGGCCTGGCACCATAAGGGGAGGAGAAGAAAGGGACGACCAGCTTCAGCTTTGATCCTGGGAGGAACTTCGTGTGCTCTCCACTCTGCACCACCCCAGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_771#0 CGCGCCGCGGAGCTGAAATCTGCGGAAATACCGGAGCAGACCACCGCACGGCGGAGCTCT 60 consensus_771#1 ------------------------------------------------------------ consensus_771#0 CACGCAGGCGCCCTCTCATGTGCCGTTTAGCCAGTTGATGCGGGGAGAAAGTTTTGGATA 120 consensus_771#1 ------------------------------------------------------------ consensus_771#0 TGTTTTTCTAGAGTTTCTCCTCTAAAGTGCAACGACTTCGAGCCTCTCCGGATTT-TGGA 179 consensus_771#1 -------------------------------------------------GGATTGGTGGA 11 ***** **** consensus_771#0 TTATGTTTATGCGGGATCGTCAATCCTCCTGATCGCCATATTTGTGCGCGGCGAAACTCG 239 consensus_771#1 GGGGCGGTATTCTCCATCGTCAATCCTCCTGATC-CCATATCTCTGCCCCGCGAAACTCG 70 *** * ******************* ****** * *** * ********** consensus_771#0 GGGGAAAGTTGTCAGAGTTATGACATTTGAGGCGTTCATGAAGCTGCATGGAGTCGACTT 299 consensus_771#1 GCGTAAAGTTGTCAGAGTTATGACATTTGAGGCGTTCATGAAGCTGCATGGAGTCGACTT 130 * * ******************************************************** consensus_771#0 TGATCGAAAGCAAAGTGGCTCCGTGGGGCTGACTGTGGAGCGGATTGTGCACCATTTGTA 359 consensus_771#1 TGATCGAAAGCAAAGTGCCTCCGTGGGGCTGACTGTGGAGCGGATTGCGCACCATTTGTA 190 ***************** ***************************** ************ consensus_771#0 AGGTCTGGCACCATAAGGAGGATGAAAAGAA----------------------------- 390 consensus_771#1 AGGCCTGGCACCATAAGG-GGAGGAGAAGAAAGGGACGACCAGCTTCAGCTTTGATCCTG 249 *** ************** *** ** ***** consensus_771#0 ------------------------------------------ consensus_771#1 GGAGGAACTTCGTGTGCTCTCCACTCTGCACCACCCCAGAGA 291 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |