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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_774#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence
[CACTTCGCTTGTGTTTGTATATTGTCCCCGTAAGAAATGTCGTACAACTACGTGGTGACAACACAGAAACCGACGGCAGTGAATGCCTGCATAACGGGTCATTTCACGTCCGCCGAGGACCTCAATCTACTCATTGCTAAGAACACCCGATTGGAGATTTATGTGGTCACAGCAGAAGGTCTCAGGCCCGTCAAGGAAGTGGGCATGTATGGAAAAATTGCTGTTATTGATCCCTTCAGACCAAAGGGTGAGAGCAAAGACCTGCTGTTCATTCTCACATCCAAGTACAACGCCTGCATCCTAGAATACAAACAGAACGGAGAGAGCATTGACATCATCACCCGTGCTCACGGCAATGTCAAGGATCCCATTGGGCGTCCATCAGAAACTGGCATTATTGGAATTGTGGACCCAGAGTGCCGAATGATTGGCCTGCGGCTTTATGATGGACTATTCAAGGTGATCCCGTTAGACCGAGACAACCGGGAACTCAAGGCCTACAACATCAGACTGGAGGAGCTGCACGTTATAGACGTACACTTCCTGTATGGCTGTCANGCTCCAACTGTCTGCTTCATCTACCAGGACCCCCAGGGGCGC]
[+] EMBL CA589390 [CACTTCGCTTGTGTTTGTATATTGTCCCCGTAAGAAATGTCGTACAACTACGTGGTGACAACACAGAAACCGACGGCAGTGAATGCCTGCATAACGGGTCATTTCACGTCCGCCGAGGACCTCAATCTACTCATTGCTAAGAACACCCGATTGGAGATTTATGTGGTCACAGCAGAAGGTCTCAGGCCCGTCAAGGAAGTGGGCATGTATGGAAAAATTGCTGTTATTGATCCCTTCAGACCAAAGGGTGAGAGCAAAGACCTGCTGTTCATTCTCACATCCAAGTACAACGCCTGCATCCTAGAATACAAACAGAACGGAGAGAGCATTGACATCATCACCCGTGCTCACGGCAATGTCAAGGATCCCATTGGGCGTCCATCAGAAACTGGCATTATTGGAATTGTGGACCCAGAGTGCCGAATGATTGGCCTGCGGCTTTATGATGGACTATTCAAGGTGATCCCGTTAGACCGAGACAACCGGGAACTCAAGGCCTACAACATCAGACTGGAGGAGCTGCACGTTATAGACGTACACTTCCTGTATGGCTGTCANGCTCCAACTGTCTGCTTCATCTACCAGGACCCCCAGGGGCGC]
consensusID : consensus_774#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence
[TGTAGTGTTAGTAGTAAGAAATGTCGTACAACTACGTGGTGACAGCACAGAAACCGACGGCAGTGAATGCCTGCATAACGGGTCATTTCACGTCCGCCGAGGACCTCAATCTACTCATTGCTAAGAACACCCGATTGGAGATTTATGTGGTCACAGCAGAAGGTCTCAGGCCCGTCAAGGAAGTGGGCATGTATGGAAAAATTGCTGTTATGGAACTCTTCAGACCAAAGGGTGAGAGCAAAGACCTGCTGTTCATTCTCACATCCAAGTACAACGCCTGCATCCTAGAATACAAACAGAACGGAGAGAGCATTGACATCATCACCCGTGCTCACGGGAATGTCAAGGATC]
[+] EMBL FR0058102 [TGTAGTGTTAGTAGTAAGAAATGTCGTACAACTACGTGGTGACAGCACAGAAACCGACGGCAGTGAATGCCTGCATAACGGGTCATTTCACGTCCGCCGAGGACCTCAATCTACTCATTGCTAAGAACACCCGATTGGAGATTTATGTGGTCACAGCAGAAGGTCTCAGGCCCGTCAAGGAAGTGGGCATGTATGGAAAAATTGCTGTTATGGAACTCTTCAGACCAAAGGGTGAGAGCAAAGACCTGCTGTTCATTCTCACATCCAAGTACAACGCCTGCATCCTAGAATACAAACAGAACGGAGAGAGCATTGACATCATCACCCGTGCTCACGGGAATGTCAAGGATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_774#0 CACTTCGCTTGTGTTTGTATATTGTCCCC-GTAAGAAATGTCGTACAACTACGTGGTGAC 59
consensus_774#1 -----------------TGTAGTGTTAGTAGTAAGAAATGTCGTACAACTACGTGGTGAC 43
* ** *** ******************************
consensus_774#0 AACACAGAAACCGACGGCAGTGAATGCCTGCATAACGGGTCATTTCACGTCCGCCGAGGA 119
consensus_774#1 AGCACAGAAACCGACGGCAGTGAATGCCTGCATAACGGGTCATTTCACGTCCGCCGAGGA 103
* **********************************************************
consensus_774#0 CCTCAATCTACTCATTGCTAAGAACACCCGATTGGAGATTTATGTGGTCACAGCAGAAGG 179
consensus_774#1 CCTCAATCTACTCATTGCTAAGAACACCCGATTGGAGATTTATGTGGTCACAGCAGAAGG 163
************************************************************
consensus_774#0 TCTCAGGCCCGTCAAGGAAGTGGGCATGTATGGAAAAATTGCTGTTATTGATCCCTTCAG 239
consensus_774#1 TCTCAGGCCCGTCAAGGAAGTGGGCATGTATGGAAAAATTGCTGTTATGGAACTCTTCAG 223
************************************************ ** * ******
consensus_774#0 ACCAAAGGGTGAGAGCAAAGACCTGCTGTTCATTCTCACATCCAAGTACAACGCCTGCAT 299
consensus_774#1 ACCAAAGGGTGAGAGCAAAGACCTGCTGTTCATTCTCACATCCAAGTACAACGCCTGCAT 283
************************************************************
consensus_774#0 CCTAGAATACAAACAGAACGGAGAGAGCATTGACATCATCACCCGTGCTCACGGCAATGT 359
consensus_774#1 CCTAGAATACAAACAGAACGGAGAGAGCATTGACATCATCACCCGTGCTCACGGGAATGT 343
****************************************************** *****
consensus_774#0 CAAGGATCCCATTGGGCGTCCATCAGAAACTGGCATTATTGGAATTGTGGACCCAGAGTG 419
consensus_774#1 CAAGGATC---------------------------------------------------- 351
********
consensus_774#0 CCGAATGATTGGCCTGCGGCTTTATGATGGACTATTCAAGGTGATCCCGTTAGACCGAGA 479
consensus_774#1 ------------------------------------------------------------
consensus_774#0 CAACCGGGAACTCAAGGCCTACAACATCAGACTGGAGGAGCTGCACGTTATAGACGTACA 539
consensus_774#1 ------------------------------------------------------------
consensus_774#0 CTTCCTGTATGGCTGTCANGCTCCAACTGTCTGCTTCATCTACCAGGACCCCCAGGGGCG 599
consensus_774#1 ------------------------------------------------------------
consensus_774#0 C 600
consensus_774#1 -
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |