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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_780#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence
[TGTCAAACCGCAGCTGGCAGCTGATTCCTGTGTGTCGGGTAAAGATTCGAGGACTCTGAAGAAGACAGCATCGTCATGGCTACTGAGAACAGTGAGACCTTCCTGAGTTCCATCATAAAGACGAGTCAGCTGATCCAGTCGGGATCTCCTAAAATCTACCAGCTGAACGCGGTGACGAAGACCACCGAAGGCCTGAAAACAGTGACTGTCGGCACCAAAAATGTGAACAGGCTGAACAAAACCATCCTGCTTCTGGGTGAGACAGGAACAGGGAAGTCCGCTCTGATCAACGTCCTGGTCAACTACGCCATGGGAGTGAAGTGGGAGGACGAAGTCTGGTTCAAGATCGTAGAGGAGGAGACGACGAGGCAGTCCGAGAGTCAGACGTCAGACGTGATCATGTACCAGATCTTTGGGTTCGAGGAGAAAACGTTTCCTTTCTCTCTGACCCTCGTCGATACTCCCGGGTACGGAGACAACAGAGATGAAATAAATGATGACATCATTGGTGAGAGACTGCTGGAGTGGTTCACCTCTGATGGTGGAGTTCACGAGGTCCACGCAGTGGGTCTGGTGCTGAAGGCCAGCGATAATCGACTGAGTGACCGACTCAGCTACATCTTTAATTCAGTG]
[+] EMBL CA589510 [TGTCAAACCGCAGCTGGCAGCTGATTCCTGTGTGTCGGGTAAAGATTCGAGGACTCTGAAGAAGACAGCATCGTCATGGCTACTGAGAACAGTGAGACCTTCCTGAGTTCCATCATAAAGACGAGTCAGCTGATCCAGTCGGGATCTCCTAAAATCTACCAGCTGAACGCGGTGACGAAGACCACCGAAGGCCTGAAAACAGTGACTGTCGGCACCAAAAATGTGAACAGGCTGAACAAAACCATCCTGCTTCTGGGTGAGACAGGAACAGGGAAGTCCGCTCTGATCAACGTCCTGGTCAACTACGCCATGGGAGTGAAGTGGGAGGACGAAGTCTGGTTCAAGATCGTAGAGGAGGAGACGACGAGGCAGTCCGAGAGTCAGACGTCAGACGTGATCATGTACCAGATCTTTGGGTTCGAGGAGAAAACGTTTCCTTTCTCTCTGACCCTCGTCGATACTCCCGGGTACGGAGACAACAGAGATGAAATAAATGATGACATCATTGGTGAGAGACTGCTGGAGTGGTTCACCTCTGATGGTGGAGTTCACGAGGTCCACGCAGTGGGTCTGGTGCTGAAGGCCAGCGATAATCGACTGAGTGACCGACTCAGCTACATCTTTAATTCAGTG]
consensusID : consensus_780#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence
[CTCTGTCAAACCGCAGCTGGCAGCTGATTCCTGTGTGTCGGGTAAAGATTCGAGGACTCTGAAGAAGACAGCATCGTCATGGCTACTGAGAACAGTGAGACCTTCCTGAGTTCCATCATAAAGACGAGTCAGCTGATCCAGTCGGGATCTCCTAAAATCTACCAGCTGAACAAAACCATCCTGCTTCTGGGTGAGACAGGAACAGGGAAGTCCGCTCTGATCAACGTCCTGGTCAACTACGCCATGGGAGTGAAGTGGGAGGACGAAGTCTGGTTCAAGATCGTAGAGGAGGAGACGACGAGGCAGTCCGAGAGTCAGACGTCAGACGTGATCATGTACCAGATCTTTGGGTTCGAGGAGAAAACGTTTCCTTTCTCTCTGACCCTCGTCGATACTCCCGGGTACGGAGACAACAGAGATGAAATAAATGATGACATCATTGGTGAGAGACTGCTGGAGTGGTTCACCTCTGATGGTGGAGTTCACGAGGTCCACGCAGTGGGTCTGGTGCTGAAGGCCAGCGATAATCGACTGAGTGACCGACTCAGGTACATCTTTAATTCAGTGGCGTCTCTGTTCGCAGCAAACATGGAGAAGAACATATTCGCCCTACTGACGCACTCAG]
[+] EMBL CA591011 [CTCTGTCAAACCGCAGCTGGCAGCTGATTCCTGTGTGTCGGGTAAAGATTCGAGGACTCTGAAGAAGACAGCATCGTCATGGCTACTGAGAACAGTGAGACCTTCCTGAGTTCCATCATAAAGACGAGTCAGCTGATCCAGTCGGGATCTCCTAAAATCTACCAGCTGAACAAAACCATCCTGCTTCTGGGTGAGACAGGAACAGGGAAGTCCGCTCTGATCAACGTCCTGGTCAACTACGCCATGGGAGTGAAGTGGGAGGACGAAGTCTGGTTCAAGATCGTAGAGGAGGAGACGACGAGGCAGTCCGAGAGTCAGACGTCAGACGTGATCATGTACCAGATCTTTGGGTTCGAGGAGAAAACGTTTCCTTTCTCTCTGACCCTCGTCGATACTCCCGGGTACGGAGACAACAGAGATGAAATAAATGATGACATCATTGGTGAGAGACTGCTGGAGTGGTTCACCTCTGATGGTGGAGTTCACGAGGTCCACGCAGTGGGTCTGGTGCTGAAGGCCAGCGATAATCGACTGAGTGACCGACTCAGGTACATCTTTAATTCAGTGGCGTCTCTGTTCGCAGCAAACATGGAGAAGAACATATTCGCCCTACTGACGCACTCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_780#0 ---TGTCAAACCGCAGCTGGCAGCTGATTCCTGTGTGTCGGGTAAAGATTCGAGGACTCT 57
consensus_780#1 CTCTGTCAAACCGCAGCTGGCAGCTGATTCCTGTGTGTCGGGTAAAGATTCGAGGACTCT 60
*********************************************************
consensus_780#0 GAAGAAGACAGCATCGTCATGGCTACTGAGAACAGTGAGACCTTCCTGAGTTCCATCATA 117
consensus_780#1 GAAGAAGACAGCATCGTCATGGCTACTGAGAACAGTGAGACCTTCCTGAGTTCCATCATA 120
************************************************************
consensus_780#0 AAGACGAGTCAGCTGATCCAGTCGGGATCTCCTAAAATCTACCAGCTGAACGCGGTGACG 177
consensus_780#1 AAGACGAGTCAGCTGATCCAGTCGGGATCTCCTAAAATCTACCAGCTGAAC--------- 171
***************************************************
consensus_780#0 AAGACCACCGAAGGCCTGAAAACAGTGACTGTCGGCACCAAAAATGTGAACAGGCTGAAC 237
consensus_780#1 ------------------------------------------------------------
consensus_780#0 AAAACCATCCTGCTTCTGGGTGAGACAGGAACAGGGAAGTCCGCTCTGATCAACGTCCTG 297
consensus_780#1 AAAACCATCCTGCTTCTGGGTGAGACAGGAACAGGGAAGTCCGCTCTGATCAACGTCCTG 231
************************************************************
consensus_780#0 GTCAACTACGCCATGGGAGTGAAGTGGGAGGACGAAGTCTGGTTCAAGATCGTAGAGGAG 357
consensus_780#1 GTCAACTACGCCATGGGAGTGAAGTGGGAGGACGAAGTCTGGTTCAAGATCGTAGAGGAG 291
************************************************************
consensus_780#0 GAGACGACGAGGCAGTCCGAGAGTCAGACGTCAGACGTGATCATGTACCAGATCTTTGGG 417
consensus_780#1 GAGACGACGAGGCAGTCCGAGAGTCAGACGTCAGACGTGATCATGTACCAGATCTTTGGG 351
************************************************************
consensus_780#0 TTCGAGGAGAAAACGTTTCCTTTCTCTCTGACCCTCGTCGATACTCCCGGGTACGGAGAC 477
consensus_780#1 TTCGAGGAGAAAACGTTTCCTTTCTCTCTGACCCTCGTCGATACTCCCGGGTACGGAGAC 411
************************************************************
consensus_780#0 AACAGAGATGAAATAAATGATGACATCATTGGTGAGAGACTGCTGGAGTGGTTCACCTCT 537
consensus_780#1 AACAGAGATGAAATAAATGATGACATCATTGGTGAGAGACTGCTGGAGTGGTTCACCTCT 471
************************************************************
consensus_780#0 GATGGTGGAGTTCACGAGGTCCACGCAGTGGGTCTGGTGCTGAAGGCCAGCGATAATCGA 597
consensus_780#1 GATGGTGGAGTTCACGAGGTCCACGCAGTGGGTCTGGTGCTGAAGGCCAGCGATAATCGA 531
************************************************************
consensus_780#0 CTGAGTGACCGACTCAGCTACATCTTTAATTCAGTG------------------------ 633
consensus_780#1 CTGAGTGACCGACTCAGGTACATCTTTAATTCAGTGGCGTCTCTGTTCGCAGCAAACATG 591
***************** ******************
consensus_780#0 ----------------------------------
consensus_780#1 GAGAAGAACATATTCGCCCTACTGACGCACTCAG 625
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |