cluster # 788

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Takifugu rubripes
cluster # 788 cluster # 788 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_788#0 length = 335 sequences # 1

consensus_788#1 length = 332 sequences # 1

consensusID : consensus_788#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 335
fasta sequence

                              [ACGATGTCAAAGCGACCTTCAGGGGCTCCCCCCCCTCCCCCTGCCCCAGCAACCCAAATGCCTTCCACCCCAGGGTTTGTGGGCTACAATCCTTACAGCCATCTGGCCTACAACAACCTCCGGCTGGGAGGGAGCTCCGGAGGCTCCAGCAGGAACTCCTCGGGCATCACCGTCCCAAAGCCTCCCAAACCTGCAGACAAGCCTCTGATGCCTTACATGCGGGACAGCCGGAAGGTATGGGACCAAGTGAAAGCATTCAATCCAGACCTGAAGCTGTGGGAAATAGGGAAAATAATCGGGGGGATGTGGAGGGACCTGAGCGACGAAGAGAAGCA]

[+] EMBL FR0061818            [ACGATGTCAAAGCGACCTTCAGGGGCTCCCCCCCCTCCCCCTGCCCCAGCAACCCAAATGCCTTCCACCCCAGGGTTTGTGGGCTACAATCCTTACAGCCATCTGGCCTACAACAACCTCCGGCTGGGAGGGAGCTCCGGAGGCTCCAGCAGGAACTCCTCGGGCATCACCGTCCCAAAGCCTCCCAAACCTGCAGACAAGCCTCTGATGCCTTACATGCGGGACAGCCGGAAGGTATGGGACCAAGTGAAAGCATTCAATCCAGACCTGAAGCTGTGGGAAATAGGGAAAATAATCGGGGGGATGTGGAGGGACCTGAGCGACGAAGAGAAGCA]




>consensus_788#0
ACGATGTCAAAGCGACCTTCAGGGGCTCCCCCCCCTCCCCCTGCCCCAGCAACCCAAATG
CCTTCCACCCCAGGGTTTGTGGGCTACAATCCTTACAGCCATCTGGCCTACAACAACCTC
CGGCTGGGAGGGAGCTCCGGAGGCTCCAGCAGGAACTCCTCGGGCATCACCGTCCCAAAG
CCTCCCAAACCTGCAGACAAGCCTCTGATGCCTTACATGCGGGACAGCCGGAAGGTATGG
GACCAAGTGAAAGCATTCAATCCAGACCTGAAGCTGTGGGAAATAGGGAAAATAATCGGG
GGGATGTGGAGGGACCTGAGCGACGAAGAGAAGCA

consensusID : consensus_788#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 332
fasta sequence

                              [ACAAAGAGGGATAGTGGGTTTCATTATGGCAGCAAAGTCCTCTCATTAAGCCAGGCGTCAGCAACGATGTCAAAGCGACCTTCATATGCTCCCCCCCCTCCCCCTGCCCCAGCAACCCAAATGCCTTCCACCCCAGGGTTTGTGGGCTACAATCCTTACAGCCATCTGGCCTACAACAACCTCCGGCTGGGAGGGAGCTCCGGAGGCTCCAGCAGGAACTCCTCGGGCATCACCGGCCCAAAGCCTCCCAAACCTCCAGACAAGCCTCTGATGCCTTACATGCGGGACAGCCGGAAGGTAAGCAGGAAGGTATGGGACCAGGTGAAAGCATC]

[+] EMBL FR0061553            [ACAAAGAGGGATAGTGGGTTTCATTATGGCAGCAAAGTCCTCTCATTAAGCCAGGCGTCAGCAACGATGTCAAAGCGACCTTCATATGCTCCCCCCCCTCCCCCTGCCCCAGCAACCCAAATGCCTTCCACCCCAGGGTTTGTGGGCTACAATCCTTACAGCCATCTGGCCTACAACAACCTCCGGCTGGGAGGGAGCTCCGGAGGCTCCAGCAGGAACTCCTCGGGCATCACCGGCCCAAAGCCTCCCAAACCTCCAGACAAGCCTCTGATGCCTTACATGCGGGACAGCCGGAAGGTAAGCAGGAAGGTATGGGACCAGGTGAAAGCATC]




>consensus_788#1
ACAAAGAGGGATAGTGGGTTTCATTATGGCAGCAAAGTCCTCTCATTAAGCCAGGCGTCA
GCAACGATGTCAAAGCGACCTTCATATGCTCCCCCCCCTCCCCCTGCCCCAGCAACCCAA
ATGCCTTCCACCCCAGGGTTTGTGGGCTACAATCCTTACAGCCATCTGGCCTACAACAAC
CTCCGGCTGGGAGGGAGCTCCGGAGGCTCCAGCAGGAACTCCTCGGGCATCACCGGCCCA
AAGCCTCCCAAACCTCCAGACAAGCCTCTGATGCCTTACATGCGGGACAGCCGGAAGGTA
AGCAGGAAGGTATGGGACCAGGTGAAAGCATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_788#0      ------------------------------------------------------------
consensus_788#1      ACAAAGAGGGATAGTGGGTTTCATTATGGCAGCAAAGTCCTCTCATTAAGCCAGGCGTCA 60
                                                                                 

consensus_788#0      ---ACGATGTCAAAGCGACCTTCAGGGGCTCCCCCCCCTCCCCCTGCCCCAGCAACCCAA 57
consensus_788#1      GCAACGATGTCAAAGCGACCTTCATATGCTCCCCCCCCTCCCCCTGCCCCAGCAACCCAA 120
                        *********************   *********************************

consensus_788#0      ATGCCTTCCACCCCAGGGTTTGTGGGCTACAATCCTTACAGCCATCTGGCCTACAACAAC 117
consensus_788#1      ATGCCTTCCACCCCAGGGTTTGTGGGCTACAATCCTTACAGCCATCTGGCCTACAACAAC 180
                     ************************************************************

consensus_788#0      CTCCGGCTGGGAGGGAGCTCCGGAGGCTCCAGCAGGAACTCCTCGGGCATCACCGTCCCA 177
consensus_788#1      CTCCGGCTGGGAGGGAGCTCCGGAGGCTCCAGCAGGAACTCCTCGGGCATCACCGGCCCA 240
                     ******************************************************* ****

consensus_788#0      AAGCCTCCCAAACCTGCAGACAAGCCTCTGATGCCTTACATGCGGGACAGCCGGAAGGTA 237
consensus_788#1      AAGCCTCCCAAACCTCCAGACAAGCCTCTGATGCCTTACATGCGGGACAGCCGGAAGGTA 300
                     *************** ********************************************

consensus_788#0      TGGGACCAAGTGAAAGCATTCAATCCAGACCTGAAGCTGTGGGAAATAGGGAAAATAATC 297
consensus_788#1      -AGCAGGAAGGTATGGGACCAGGTGAAAGCATC--------------------------- 332
                       * *  ***  *  * *     *  *  * *                            

consensus_788#0      GGGGGGATGTGGAGGGACCTGAGCGACGAAGAGAAGCA 335
consensus_788#1      --------------------------------------

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)